ID:

ssc-mir-23a

 Coordinate:

chr2:65581838-65581907 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.4 -41.4 -40.7

Sense Strand Reads

GGTGCCAGCTGCTGGCTCTGCTCAGTGCCCCCCGACCCCTGTGCCATGGTCGGCTGGGGTTCCTGGGGATGGGATTTGCTGCCTGTCACAAATCACATTGCCAGGGATTTCCAATCGACCCTGAGCCCTGCCTCTGGGGCCACCGCTGTCACTGTCACTGTCACTGCTGA

****************************************..((((.((((((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).)))))).)).))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
...........................................................................................ATCACATTGCCAGGGATTTCCA......................................................... 22 0 1 60065.00 60065 28176 20316 9819 1378 260 116
...........................................................................................ATCACATTGCCAGGGATTTCC.......................................................... 21 0 1 36859.00 36859 17097 14323 3697 686 577 479
...........................................................................................ATCACATTGCCAGGGATTTCCAT........................................................ 23 1 1 8776.00 8776 3729 3404 1453 163 19 8
...........................................................................................ATCACATTGCCAGGGATTTC........................................................... 20 0 1 8304.00 8304 3320 2903 1801 225 39 16
...........................................................................................ATCACATTGCCAGGGATTTCCAAT....................................................... 24 0 1 8061.00 8061 4084 3862 96 10 8 1
...........................................................................................ATCACATTGCCAGGGATTTCCAA........................................................ 23 0 1 5949.00 5949 2314 1976 1461 160 27 11
...........................................................................................ATCACATTGCCAGGGATTT............................................................ 19 0 1 2693.00 2693 535 419 1531 186 12 10
...........................................................................................ATCACATTGCCAGGGATTTCCATT....................................................... 24 1 1 1984.00 1984 961 955 61 5 0 2
..............................................................................................ACATTGCCAGGGATTTCCA......................................................... 19 0 1 829.00 829 298 183 315 24 9 0
...........................................................................................ATCACATTGCCAGGGATTTCA.......................................................... 21 1 1 446.00 446 100 64 233 42 4 3
...........................................................................................ATCACATTGCCAGGGATTTCT.......................................................... 21 1 1 423.00 423 110 83 201 25 3 1
...........................................................................................ATCACATTGCCAGGGATT............................................................. 18 0 2 405.00 810 277 177 308 14 16 18
...........................................................................................ATCACATTGCCAGGGATTTCCT......................................................... 22 1 1 340.00 340 137 109 55 7 19 13
...........................................................................................ATCACATTGCCAGGGATTACCATT....................................................... 24 2 2 319.00 638 297 161 147 17 14 2
...........................................................................................ATCACATTGCCAGGGATTTCCAATT...................................................... 25 1 1 300.00 300 158 137 1 2 1 1
..........................................................................................AATCACATTGCCAGGGATTTCCA......................................................... 23 0 1 263.00 263 130 72 52 9 0 0
..........................................................................................AATCACATTGCCAGGGATTTCC.......................................................... 22 0 1 257.00 257 115 84 38 12 5 3
..............................................................................................ACATTGCCAGGGATTTCC.......................................................... 18 0 2 240.00 480 166 124 152 10 27 1
...........................................................................................ATCACATTGCCAGGGATTTT........................................................... 20 1 1 233.00 233 32 31 129 39 1 1
...........................................................................................ATCACATTGCCAGGGATTTCCAAA....................................................... 24 1 1 225.00 225 108 97 15 2 1 2
............................................................................................TCACATTGCCAGGGATTTCCAAT....................................................... 23 0 1 223.00 223 113 110 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTTC.......................................................... 21 1 1 195.00 195 3 3 162 27 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAAC....................................................... 24 1 1 186.00 186 102 81 1 1 1 0
............................................................................................TCACATTGCCAGGGATTTCCA......................................................... 21 0 1 182.00 182 86 83 11 0 1 1
...........................................................................................ATCACATTGCCAGGGATTTA........................................................... 20 1 2 153.50 307 17 14 236 39 0 1
...........................................................................................ATCACATTGCCAGGGATTTTCA......................................................... 22 1 1 115.00 115 11 7 76 21 0 0
...........................................................................................ATCACATTGCCAGGGATTTCTA......................................................... 22 1 1 112.00 112 8 7 74 23 0 0
..........................................................................................AATCACATTGCCAGGGATTTC........................................................... 21 0 1 101.00 101 39 24 33 5 0 0
..............................................................................................ACATTGCCAGGGATTTCCAA........................................................ 20 0 1 98.00 98 23 24 44 7 0 0
...........................................................................................ATCACATTGCCAGGGCTTTCCA......................................................... 22 1 1 92.00 92 27 15 37 13 0 0
............................................................................................TCACATTGCCAGGGATTTCC.......................................................... 20 0 1 90.00 90 43 39 5 0 2 1
..............................................................................................ACATTGCCAGGGATTTCCAAT....................................................... 21 0 1 88.00 88 49 38 1 0 0 0
..........................................................................................CATCACATTGCCAGGGATTTCCA......................................................... 23 1 1 85.00 85 37 38 10 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCACT....................................................... 24 1 1 75.00 75 32 31 10 0 2 0
...........................................................................................ATCACATTGCCAGGGATTTCCATA....................................................... 24 2 1 75.00 75 39 30 6 0 0 0
..............................................................................................ACATTGCCAGGGATTTCCAT........................................................ 20 1 2 73.00 146 52 41 50 2 1 0
...........................................................................................ATCACATTGCTAGGGATTTCCA......................................................... 22 1 1 69.00 69 28 13 24 4 0 0
..............................................................................................ACATTGCCAGGGATTTC........................................................... 17 0 2 66.00 132 45 28 54 5 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAG........................................................ 23 1 1 62.00 62 25 12 22 1 2 0
...........................................................................................ATCACATTGCCAGGGATTACCAA........................................................ 23 1 2 59.50 119 15 3 90 7 4 0
...........................................................................................ATCACATTGCCAGGGATTTCCG......................................................... 22 1 1 54.00 54 15 10 24 3 1 1
..........................................................................................CATCACATTGCCAGGGATTTCC.......................................................... 22 1 1 52.00 52 29 22 1 0 0 0
..............................................................................................ACATTGCCAGGGATTT............................................................ 16 0 2 52.00 104 7 3 90 4 0 0
...........................................................................................ATCACATTGCCAGGGCTTTCC.......................................................... 21 1 1 50.00 50 17 12 13 7 1 0
...........................................................................................ATCACATTGTCAGGGATTTCCA......................................................... 22 1 1 48.00 48 18 12 15 2 0 1
...........................................................................................ATTACATTGCCAGGGATTTCCA......................................................... 22 1 1 48.00 48 15 10 19 4 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAC........................................................ 23 1 2 46.00 92 40 17 27 8 0 0
...........................................................................................ATCACATTACCAGGGATTTCCA......................................................... 22 1 1 44.00 44 22 14 8 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCC......................................................... 22 1 1 42.00 42 15 7 19 1 0 0
............................................................................................TCACATTGCCAGGGATTTCCAAC....................................................... 23 1 1 41.00 41 18 22 0 0 1 0
............................................................................................TCACATTGCCAGGGATTTCCAA........................................................ 22 0 1 38.00 38 21 14 3 0 0 0
............................................................................................TCACATTGCCAGGGATTTCCATT....................................................... 23 1 1 38.00 38 17 21 0 0 0 0
...........................................................................................GTCACATTGCCAGGGATTTCCA......................................................... 22 1 1 37.00 37 17 12 8 0 0 0
...........................................................................................ACCACATTGCCAGGGATTTCCA......................................................... 22 1 1 36.00 36 18 12 5 1 0 0
...........................................................................................ATCACATTGCCAGGGA............................................................... 16 0 2 35.00 70 41 18 9 1 1 0
...........................................................................................ATCACATTGCCAGGGAT.............................................................. 17 0 2 34.50 69 24 21 19 1 3 1
............................................................................................TCACATTGCCAGGGATTTC........................................................... 19 0 1 34.00 34 14 16 4 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCATTT...................................................... 25 2 2 33.50 67 29 32 5 1 0 0
...........................................................................................ATCGCATTGCCAGGGATTTCCA......................................................... 22 1 1 32.00 32 10 10 11 1 0 0
...........................................................................................ATCACATTGCCAGGGGTTTCCA......................................................... 22 1 1 31.00 31 13 10 8 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAAG....................................................... 24 1 1 31.00 31 15 15 0 1 0 0
...........................................................................................ATCACATTGCCAGGGACTTCCA......................................................... 22 1 1 29.00 29 11 11 7 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCTTT....................................................... 24 2 2 28.50 57 27 30 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCG.......................................................... 21 1 1 28.00 28 10 6 8 4 0 0
............................................................................................TCACATTGCCAGGGATTACCATT....................................................... 23 2 2 28.00 56 31 11 13 0 1 0
..........................................................................................AATCACATTGCCAGGGATTT............................................................ 20 0 1 27.00 27 3 5 14 5 0 0
...........................................................................................ATCACATTGCCGGGGATTTCCA......................................................... 22 1 1 27.00 27 16 4 6 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAATA...................................................... 25 1 1 27.00 27 18 9 0 0 0 0
...........................................................................................ATCACATTGCTAGGGATTTCC.......................................................... 21 1 1 27.00 27 11 9 4 1 1 1
...........................................................................................ATCACATCGCCAGGGATTTCCA......................................................... 22 1 1 27.00 27 9 9 9 0 0 0
...........................................................................................ATCACATTGCCAGGGATTCCA.......................................................... 21 2 3 26.33 79 15 11 51 1 1 0
...........................................................................................ACCACATTGCCAGGGATTTCC.......................................................... 21 1 1 26.00 26 13 9 4 0 0 0
...........................................................................................ATCACATTGCCAGGGATTCC........................................................... 20 1 2 26.00 52 9 7 31 5 0 0
...........................................................................................ATCACATTGCCAGGG................................................................ 15 0 2 26.00 52 32 18 2 0 0 0
............................................................................................TCACATTGCCAGGGATTTCCAATT...................................................... 24 1 1 25.00 25 16 9 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAAAT...................................................... 25 2 1 25.00 25 13 10 1 0 0 1
............................................................................................TCACATTGCCAGGGATTTCCAT........................................................ 22 1 1 25.00 25 11 12 1 1 0 0
...........................................................................................ATCACGTTGCCAGGGATTTCCA......................................................... 22 1 1 24.00 24 6 10 6 2 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAGT....................................................... 24 1 1 24.00 24 10 8 5 0 1 0
...........................................................................................ATCACATTGTCAGGGATTTCC.......................................................... 21 1 2 23.50 47 10 5 5 3 9 15
...........................................................................................TTCACATTGCCAGGGATTTCCA......................................................... 22 1 1 23.00 23 13 5 5 0 0 0
.......................................................GGGGTTCCTGGGGATGGGATT.............................................................................................. 21 0 1 23.00 23 2 1 20 0 0 0
...........................................................................................ATCATATTGCCAGGGATTTCCA......................................................... 22 1 2 22.50 45 14 10 21 0 0 0
...........................................................................................ATCACATTGCCAGGGATA............................................................. 18 1 2 22.00 44 12 9 22 1 0 0
...........................................................................................ATCACATTGCCAGGGGTTTCC.......................................................... 21 1 1 22.00 22 8 7 7 0 0 0
...........................................................................................ATCGCATTGCCAGGGATTTCC.......................................................... 21 1 1 21.00 21 10 6 4 0 0 1
...........................................................................................ATCACATTGCCAGGGATTCCCA......................................................... 22 1 2 21.00 42 17 10 14 1 0 0
..............................................................................................ACATTGCCAGGGATTTCCATT....................................................... 21 1 1 21.00 21 9 7 5 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCTT........................................................ 23 2 4 20.25 81 32 31 15 2 0 1
...........................................................................................ATCACATTACCAGGGATTTCC.......................................................... 21 1 1 20.00 20 8 11 1 0 0 0
...........................................................................................ATCACATTGCCTGGGATTTCCA......................................................... 22 1 1 20.00 20 9 7 4 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCATC....................................................... 24 2 2 19.50 39 19 19 1 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCAA......................................................... 22 1 1 19.00 19 3 4 12 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAGA....................................................... 24 2 1 19.00 19 11 7 1 0 0 0
...........................................................................................ATCACATTGCCAGGGATCTCCA......................................................... 22 1 1 19.00 19 9 4 6 0 0 0
.......................................................GGGGTTCCTGGGGATGGGATTT............................................................................................. 22 0 1 18.00 18 0 1 17 0 0 0
...........................................................................................ATCACATTGCCAGGGACTTCC.......................................................... 21 1 1 17.00 17 5 8 3 1 0 0
...........................................................................................ATCACCTTGCCAGGGATTTCCA......................................................... 22 1 1 16.00 16 3 1 10 2 0 0
...........................................................................................GTCACATTGCCAGGGATTTCC.......................................................... 21 1 1 16.00 16 8 6 1 0 1 0
...........................................................................................ATCCCATTGCCAGGGATTTCCA......................................................... 22 1 1 15.00 15 0 0 12 3 0 0
...........................................................................................ATCACACTGCCAGGGATTTCCA......................................................... 22 1 1 15.00 15 6 2 7 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTGCA......................................................... 22 1 1 15.00 15 6 3 4 2 0 0
...........................................................................................ATCACATTGCCAGGGATCTCC.......................................................... 21 1 1 14.00 14 7 5 2 0 0 0
...........................................................................................ATCACATTGCCGGGGATTTCC.......................................................... 21 1 1 14.00 14 8 6 0 0 0 0
...........................................................................................ATCACATTGCCAGGGCTTTC........................................................... 20 1 1 14.00 14 4 6 4 0 0 0
..........................................................................................AATCACATTGCCAGGGATTTCCAAT....................................................... 25 0 1 14.00 14 8 5 1 0 0 0
...........................................................................................ATTACATTGCCAGGGATTTCC.......................................................... 21 1 2 13.50 27 11 4 11 1 0 0
...........................................................................................ATCACATAGCCAGGGATTTCCA......................................................... 22 1 1 13.00 13 4 7 2 0 0 0
...........................................................................................ATCACATTGCTAGGGATTTCCAT........................................................ 23 2 1 13.00 13 7 2 3 1 0 0
..........................................................................................CATCACATTGCCAGGGATTTCCAT........................................................ 24 2 1 13.00 13 8 4 0 1 0 0
...........................................................................................ATCACATCGCCAGGGATTTCC.......................................................... 21 1 2 12.50 25 9 9 5 1 1 0
..........................................................................................CATCACATTGCCAGGGATTTCCAAT....................................................... 25 1 1 12.00 12 4 8 0 0 0 0
..........................................................................................CATCACATTGCCAGGGATTTCCAA........................................................ 24 1 1 12.00 12 3 7 2 0 0 0
...........................................................................................ATCACGTTGCCAGGGATTTCC.......................................................... 21 1 1 12.00 12 7 2 3 0 0 0
...........................................................................................ATCACATTGCCAGGTATTTCCA......................................................... 22 1 1 12.00 12 5 1 5 1 0 0
...........................................................................................ATCACATTGCCAGGGCTTTCCAT........................................................ 23 2 1 12.00 12 4 4 3 1 0 0
..........................................................................................AATCACATTGCCAGGGATTTCCAT........................................................ 24 1 1 12.00 12 9 3 0 0 0 0
...........................................................................................ATCACATTCCCAGGGATTTCCA......................................................... 22 1 1 12.00 12 7 1 2 2 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCCA........................................................ 23 1 1 12.00 12 1 0 11 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAAAA...................................................... 25 2 1 11.00 11 5 4 0 2 0 0
...........................................................................................ATCACATTGCCAGAGATTTCCA......................................................... 22 1 1 11.00 11 3 6 2 0 0 0
...........................................................................................ATCACATTGCCCGGGATTTCCA......................................................... 22 1 1 11.00 11 4 1 6 0 0 0
...........................................................................................ATCACATTGCCAGGGCTTTCCAA........................................................ 23 1 1 11.00 11 1 1 6 3 0 0
..........................................................................................AATCACATTGCCAGGGATTTCA.......................................................... 22 1 1 11.00 11 1 1 7 2 0 0
...........................................................................................ATCACATTTCCAGGGATTTCCA......................................................... 22 1 1 11.00 11 3 1 3 4 0 0
...........................................................................................ATCACACTGCCAGGGATTTCC.......................................................... 21 1 1 10.00 10 6 4 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTCCC.......................................................... 21 1 2 10.00 20 8 4 7 1 0 0
...........................................................................................ATCACCTTGCCAGGGATTTCC.......................................................... 21 1 1 10.00 10 1 1 7 1 0 0
...........................................................................................ATCACATTGCCCGGGATTTCC.......................................................... 21 1 1 10.00 10 3 2 4 1 0 0
..........................................................................................CATCACATTGCCAGGGATTTC........................................................... 21 1 1 10.00 10 3 4 3 0 0 0
...........................................................................................ATCACATTGCCATGGATTTCCA......................................................... 22 1 1 9.00 9 5 0 4 0 0 0
...........................................................................................ATCACATTGCTAGGGATTTCCAA........................................................ 23 1 1 9.00 9 2 1 6 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCGT........................................................ 23 2 1 9.00 9 5 0 4 0 0 0
...........................................................................................ATCACATTGCTAGGGATTTC........................................................... 20 1 1 9.00 9 1 5 3 0 0 0
...........................................................................................ATCACATTCCCAGGGATTTCC.......................................................... 21 1 1 9.00 9 5 4 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTACCAAT....................................................... 24 1 1 9.00 9 8 1 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCTAT........................................................ 23 2 1 9.00 9 3 3 3 0 0 0
...........................................................................................ATCATATTGCCAGGGATTTCC.......................................................... 21 1 2 8.50 17 5 5 5 2 0 0
...........................................................................................ATCACATTGCCAGGGATTGCCA......................................................... 22 1 2 8.50 17 1 2 12 2 0 0
..........................................................................................AATCACATTGCCAGGGATT............................................................. 19 0 2 8.00 16 5 1 10 0 0 0
...........................................................................................ATCACATTGCCAGGGTTTTCCA......................................................... 22 1 1 8.00 8 2 2 2 2 0 0
...........................................................................................ATCACATTGGCAGGGATTTCCA......................................................... 22 1 1 8.00 8 4 1 2 1 0 0
...........................................................................................ATCACATTGCCATGGATTTCC.......................................................... 21 1 1 8.00 8 4 1 1 2 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAAGT...................................................... 25 2 1 8.00 8 4 3 1 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCGA......................................................... 22 1 1 8.00 8 4 2 1 0 0 1
...........................................................................................ATCACATTGCCAAGGATTTCCA......................................................... 22 1 1 8.00 8 2 5 1 0 0 0
...........................................................................................ATCACATTACCAGGGATTTCCAAT....................................................... 24 1 1 8.00 8 7 1 0 0 0 0
...........................................................................................CTCACATTGCCAGGGATTTCCA......................................................... 22 1 1 8.00 8 1 2 5 0 0 0
...........................................................................................ATCACATTGCCAGAGATTTCC.......................................................... 21 1 1 8.00 8 6 1 1 0 0 0
...........................................................................................ATCACATTGCCAGGGATTC............................................................ 19 1 2 8.00 16 3 0 10 3 0 0
...........................................................................................ATCACATTGCCAGGGATTCCCAA........................................................ 23 1 1 8.00 8 2 2 4 0 0 0
...........................................................................................ATCACATTCCCAGGGATTTCCAT........................................................ 23 2 1 8.00 8 4 4 0 0 0 0
...........................................................................................ATCACCTTGCCAGGGATTTC........................................................... 20 1 1 8.00 8 1 0 7 0 0 0
...........................................................................................ACCACATTGCCAGGGATTTC........................................................... 20 1 1 8.00 8 5 1 2 0 0 0
..............................................................................................ACATTGCCAGGGATTACCATT....................................................... 21 2 2 7.50 15 2 2 11 0 0 0
...........................................................................................AACACATTGCCAGGGATTTCCA......................................................... 22 1 2 7.50 15 8 3 4 0 0 0
...........................................................................................ATCTCATTGCCAGGGATTTCCA......................................................... 22 1 2 7.50 15 5 3 7 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCATG....................................................... 24 2 2 7.50 15 8 6 1 0 0 0
...........................................................................................ATCAAATTGCCAGGGATTTCCA......................................................... 22 1 1 7.00 7 4 2 0 1 0 0
...........................................................................................GTCACATTGCCAGGGATTTCCAA........................................................ 23 1 1 7.00 7 4 2 1 0 0 0
...........................................................................................ATCACATAGCCAGGGATTTCC.......................................................... 21 1 1 7.00 7 1 5 1 0 0 0
...........................................................................................TTCACATTGCCAGGGATTTCC.......................................................... 21 1 1 7.00 7 5 1 1 0 0 0
...........................................................................................ATCACATTTCCAGGGATTTCC.......................................................... 21 1 1 7.00 7 1 2 3 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAACT...................................................... 25 2 1 7.00 7 3 4 0 0 0 0
...........................................................................................ATCACATTGCCAGTGATTTCC.......................................................... 21 1 1 7.00 7 1 1 5 0 0 0
...........................................................................................ATTACATTGCCAGGGATTTCCAA........................................................ 23 1 1 7.00 7 2 0 4 1 0 0
...........................................................................................GTCACATTGCCAGGGATTTCCAAT....................................................... 24 1 1 7.00 7 1 6 0 0 0 0
...........................................................................................ATCACATTGCCAAGGATTTCC.......................................................... 21 1 1 7.00 7 3 2 1 0 0 1
...........................................................................................ATCACATTGCCTGGGATTTCC.......................................................... 21 1 2 7.00 14 6 5 3 0 0 0
...........................................................................................ATCACATTGCCAGGGCTTTCCAAT....................................................... 24 1 1 7.00 7 3 2 1 1 0 0
...........................................................................................ATCACATTGCCAGGGACTTCCAAT....................................................... 24 1 1 6.00 6 4 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGGGTTTC........................................................... 20 1 1 6.00 6 1 1 4 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTAC.......................................................... 21 1 1 6.00 6 4 1 0 1 0 0
...........................................................................................ATCCCATTGCCAGGGATTTC........................................................... 20 1 1 6.00 6 0 0 3 3 0 0
...........................................................................................ATCACATTGCCAGGTATTTCC.......................................................... 21 1 1 6.00 6 2 1 2 1 0 0
...........................................................................................ATCCCATTGCCAGGGATTTCC.......................................................... 21 1 1 6.00 6 1 2 3 0 0 0
...........................................................................................ATCACATTGCCAGTGATTTCCA......................................................... 22 1 1 6.00 6 2 0 4 0 0 0
...........................................................................................ATCACACTGCCAGGGATTTCCAA........................................................ 23 1 1 6.00 6 0 1 5 0 0 0
...........................................................................................GTCACATTGCCAGGGATTTCCAT........................................................ 23 2 1 6.00 6 2 1 3 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAAGA...................................................... 25 2 1 6.00 6 3 2 1 0 0 0
...........................................................................................ATCGCATTGCCAGGGATTTCCAA........................................................ 23 1 1 6.00 6 3 1 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTCCCAAT....................................................... 24 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................TTCACATTGCCAGGGATTTCCAAT....................................................... 24 1 1 6.00 6 2 4 0 0 0 0
...........................................................................................ATCGCATTGCCAGGGATTTC........................................................... 20 1 1 6.00 6 2 0 4 0 0 0
...........................................................................................ATCACCTTGCCAGGGATTTCCAA........................................................ 23 1 1 6.00 6 0 0 6 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCTA........................................................ 23 1 1 6.00 6 4 0 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTTTA......................................................... 22 2 1 6.00 6 0 0 6 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCACC....................................................... 24 2 2 5.50 11 2 7 1 0 1 0
...........................................................................................ATTACATTGCCAGGGATTTC........................................................... 20 1 2 5.50 11 2 4 5 0 0 0
..........................................................................................AATCACATTGCCAGGGATTTCCAA........................................................ 24 0 1 5.00 5 2 3 0 0 0 0
...........................................................................................ATCACATTGCGAGGGATTTCCA......................................................... 22 1 1 5.00 5 2 0 3 0 0 0
...........................................................................................ATCACATTACCAGGGATTTCCAT........................................................ 23 2 1 5.00 5 2 0 2 1 0 0
...........................................................................................ATCACATTGCCGGGGATTTC........................................................... 20 1 1 5.00 5 2 2 1 0 0 0
...........................................................................................ATCACATTGCCAGGGACTTCCAT........................................................ 23 2 1 5.00 5 3 0 2 0 0 0
...........................................................................................ATCACATTGCCAGGGAATTCCA......................................................... 22 1 1 5.00 5 2 2 0 1 0 0
...........................................................................................ATCACATTGCCAGGGGTTTCCAAT....................................................... 24 1 1 5.00 5 4 1 0 0 0 0
...........................................................................................ATCACATGGCCAGGGATTTCCA......................................................... 22 1 1 5.00 5 3 0 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCGAT....................................................... 24 1 1 5.00 5 1 4 0 0 0 0
..............................................................................................ACATTGCCAGGGATT............................................................. 15 0 4 5.00 20 4 1 15 0 0 0
...........................................................................................ATGACATTGCCAGGGATTTCCA......................................................... 22 1 1 5.00 5 2 3 0 0 0 0
...........................................................................................ATCACATTGCCAGGTATTTC........................................................... 20 1 1 5.00 5 2 1 1 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTTCAT........................................................ 23 2 1 5.00 5 2 1 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTTCCA........................................................ 23 2 1 5.00 5 0 1 4 0 0 0
...........................................................................................ATCAGATTGCCAGGGATTTCCA......................................................... 22 1 1 5.00 5 2 0 3 0 0 0
............................................................................................TCACATTGCCAGGGATTTCCAACT...................................................... 24 2 1 5.00 5 3 2 0 0 0 0
...........................................................................................ATCACAATGCCAGGGATTTCCA......................................................... 22 1 1 5.00 5 2 3 0 0 0 0
...........................................................................................ATCACATTGCCAGGGACTTCCAA........................................................ 23 1 1 5.00 5 1 2 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCGT......................................................... 22 2 1 5.00 5 2 2 1 0 0 0
..............................................................................................ACATTGCCAGGGATTTCTA......................................................... 19 1 1 5.00 5 1 0 4 0 0 0
...........................................................................................ATCCCATTGCCAGGGATTT............................................................ 19 1 1 5.00 5 0 1 1 3 0 0
...........................................................................................ACCACATTGCCAGGGATTTCCAA........................................................ 23 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................ATCACATTGTCAGGGATTTCCAA........................................................ 23 1 1 5.00 5 0 2 2 1 0 0
...........................................................................................ATAACATTGCCAGGGATTTCC.......................................................... 21 1 1 5.00 5 3 1 0 0 0 1
...........................................................................................ATCACATTGTCAGGGATTTCCAAT....................................................... 24 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGGAGTTCCA......................................................... 22 1 1 5.00 5 1 1 1 2 0 0
...........................................................................................ATCACATTGCCAGGGATTACCATTT...................................................... 25 3 3 4.67 14 3 4 5 2 0 0
...........................................................................................ATTACATTGCCAGGGATTTCCAT........................................................ 23 2 2 4.50 9 2 1 6 0 0 0
............................................................................................TCACATTGCCAGGGATTACCAA........................................................ 22 1 2 4.50 9 2 0 6 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCCT........................................................ 23 2 2 4.50 9 4 0 3 2 0 0
...........................................................................................ATCACATTGTCAGGGATTTCCAT........................................................ 23 2 2 4.50 9 1 3 5 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTTT.......................................................... 21 2 4 4.25 17 5 3 8 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAATTT..................................................... 26 2 1 4.00 4 3 1 0 0 0 0
.............................................................................................CACATTGCCAGGGATTTCCAAT....................................................... 22 0 1 4.00 4 0 2 2 0 0 0
...........................................................................................TTCACATTGCCAGGGATTTC........................................................... 20 1 1 4.00 4 1 2 0 1 0 0
.............................................................................................CACATTGCCAGGGATTTCC.......................................................... 19 0 1 4.00 4 2 0 1 0 0 1
...........................................................................................ACCACATTGCCAGGGATTTCCAT........................................................ 23 2 2 4.00 8 2 4 2 0 0 0
...........................................................................................ATCACATTACCAGGGATTTC........................................................... 20 1 1 4.00 4 2 1 0 1 0 0
...........................................................................................ATCACATTTCCAGGGATTTC........................................................... 20 1 1 4.00 4 0 0 3 1 0 0
...........................................................................................ATCACATTGCCAGGGATTG............................................................ 19 1 2 4.00 8 0 1 6 0 1 0
...........................................................................................ATCACATTGCCCGGGATTTC........................................................... 20 1 1 4.00 4 2 0 2 0 0 0
...........................................................................................ATCACATAGCCAGGGATTTC........................................................... 20 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................ATCACCTTGCCAGGGATTTCCAT........................................................ 23 2 1 4.00 4 0 1 3 0 0 0
...........................................................................................ATCACATTGACAGGGATTTCCA......................................................... 22 1 1 4.00 4 3 0 0 1 0 0
...........................................................................................ATCACATTGCCAGGGATCTC........................................................... 20 1 1 4.00 4 0 2 2 0 0 0
...........................................................................................ATCACATTGCCAGGGCTTT............................................................ 19 1 1 4.00 4 0 0 3 1 0 0
...........................................................................................ATCACGTTGCCAGGGATTTCCAT........................................................ 23 2 1 4.00 4 0 1 2 1 0 0
............................................................................................TCACATTGCCAGGGATTT............................................................ 18 0 1 4.00 4 3 1 0 0 0 0
...........................................................................................ACCACATTGCCAGGGATTTCCAAT....................................................... 24 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGTATTTCCAA........................................................ 23 1 1 4.00 4 2 1 1 0 0 0
...........................................................................................ATCATATTGCCAGGGATTTCCAAT....................................................... 24 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATCTCCAAT....................................................... 24 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAATC...................................................... 25 0 1 4.00 4 1 0 1 2 0 0
.........................................................................................AAATCACATTGCCAGGGATTTCCA......................................................... 24 0 1 4.00 4 1 0 3 0 0 0
...........................................................................................ATCACATTGCCAGGGTTTTCC.......................................................... 21 1 2 4.00 8 1 2 4 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTTCAA........................................................ 23 1 1 4.00 4 1 0 1 2 0 0
...........................................................................................ATCACATTGCCAGGGATTTCTAA........................................................ 23 1 1 4.00 4 0 2 2 0 0 0
..........................................................................................AATCACATTGCCAGGGATTTCT.......................................................... 22 1 1 4.00 4 0 0 4 0 0 0
...........................................................................................ATCACATTGCCAGGGATCTCCAT........................................................ 23 2 1 4.00 4 2 1 1 0 0 0
...........................................................................................ATCACATTACCAGGGATTTCCAA........................................................ 23 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................ATCACTTTGCCAGGGATTTCCA......................................................... 22 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATGTCCA......................................................... 22 1 1 4.00 4 0 2 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCCAT....................................................... 24 1 1 4.00 4 0 1 2 1 0 0
...........................................................................................ATCACATTGCCAGGGATTTCTT......................................................... 22 2 3 3.67 11 5 2 2 2 0 0
...........................................................................................ATCACATTGCCAGGGATTTG........................................................... 20 1 2 3.50 7 2 1 4 0 0 0
...........................................................................................ATCTCATTGCCAGGGATTTCC.......................................................... 21 1 2 3.50 7 2 2 3 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTGC.......................................................... 21 1 2 3.50 7 4 2 1 0 0 0
................................................................................................ATTGCCAGGGATTTCCA......................................................... 17 0 2 3.50 7 3 1 3 0 0 0
...........................................................................................ATCACATTGTCAGGGATTTC........................................................... 20 1 2 3.50 7 0 2 4 1 0 0
...........................................................................................ATCACATCGCCAGGGATTTC........................................................... 20 1 2 3.50 7 4 0 3 0 0 0
..............................................................................................ACATTGCCAGGGATTTTCA......................................................... 19 1 2 3.50 7 0 0 6 1 0 0
...........................................................................................ATCACATTGCCAGGAATTTCCA......................................................... 22 1 2 3.50 7 2 3 2 0 0 0
..............................................................................................ACATTGCCAGGGATTACCAA........................................................ 20 1 2 3.50 7 0 0 7 0 0 0
............................................................................................TCACATTGCCAGGGATTTCT.......................................................... 20 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................ATCACATTGCTAGGGATTTCCAAT....................................................... 24 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................ATCACATGGCCAGGGATTTCC.......................................................... 21 1 1 3.00 3 1 0 2 0 0 0
...........................................................................................ATCACTTTGCCAGGGATTTCCAT........................................................ 23 2 1 3.00 3 0 1 2 0 0 0
...........................................................................................ATCACATTGCCGGGGATTTCCAT........................................................ 23 2 1 3.00 3 1 1 1 0 0 0
...........................................................................................ATCACATCGCCAGGGATTTCCAA........................................................ 23 1 1 3.00 3 0 3 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTACCAAA....................................................... 24 2 2 3.00 6 2 0 4 0 0 0
...........................................................................................ATCACATTGCCAGGGATCTCCAA........................................................ 23 1 1 3.00 3 1 1 1 0 0 0
...........................................................................................ATCACATTGCCAGGGCTTTCCATT....................................................... 24 2 1 3.00 3 1 2 0 0 0 0
........................................................................................ATTATCACATTGCCAGGGATTTCCA......................................................... 25 3 3 3.00 9 3 6 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCAAGC....................................................... 24 3 1 3.00 3 0 0 2 1 0 0
...........................................................................................ATCACATTGCCAGCGATTTCCA......................................................... 22 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCATAA...................................................... 25 3 1 3.00 3 0 3 0 0 0 0
...........................................................................................ATCACATTGCGAGGGATTTCC.......................................................... 21 1 1 3.00 3 1 1 1 0 0 0
...........................................................................................TTCACATTGCCAGGGATTTCCAA........................................................ 23 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................ATCACATTGCCAGCGATTTCC.......................................................... 21 1 1 3.00 3 0 2 0 0 0 1
...........................................................................................ATCACATTGCCAGTGATTTCCAT........................................................ 23 2 1 3.00 3 0 0 3 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCTAT....................................................... 24 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATATCCA......................................................... 22 1 1 3.00 3 2 0 1 0 0 0
...........................................................................................GTCACATTGCCAGGGATTTC........................................................... 20 1 1 3.00 3 1 1 1 0 0 0
...........................................................................................ATCACACTGCCAGGGATTTC........................................................... 20 1 1 3.00 3 0 1 2 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCAGC....................................................... 24 2 1 3.00 3 0 3 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCAAAT....................................................... 24 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGGGTTTCCAA........................................................ 23 1 1 3.00 3 1 2 0 0 0 0
..........................................................................................AATCACATTGCCAGGGATTTCCT......................................................... 23 1 1 3.00 3 0 2 1 0 0 0
...........................................................................................ATCCCATTGCCAGGGATTTCCAA........................................................ 23 1 1 3.00 3 0 0 3 0 0 0
.............................................................................................CACATTGCCAGGGATTTCCA......................................................... 20 0 1 3.00 3 1 0 1 1 0 0
...........................................................................................ATCACATTGCCAGAGATTTCCAAT....................................................... 24 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................ATCACATTGCTAGGGATTT............................................................ 19 1 1 3.00 3 0 0 3 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCAT......................................................... 22 2 2 3.00 6 1 5 0 0 0 0
...........................................................................................ATCACATTGCCAGAGATTTCCAA........................................................ 23 1 1 3.00 3 2 0 1 0 0 0
...........................................................................................ATCACATTGCCAGGTATTTCCAAT....................................................... 24 1 1 3.00 3 2 0 0 1 0 0
..............................................................................................ACCTTGCCAGGGATTTCCA......................................................... 19 1 1 3.00 3 0 0 3 0 0 0
...........................................................................................ATCACATTGACAGGGATTTCCAAT....................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................CATCACATTGCCAGGGATTTCCATT....................................................... 25 2 1 3.00 3 1 2 0 0 0 0
...........................................................................................ATCACATCGCCAGGGATTTCCAT........................................................ 23 2 1 3.00 3 1 2 0 0 0 0
...........................................................................................ATCACATTGCCAGGGATTGCCACT....................................................... 24 2 2 3.00 6 3 2 1 0 0 0
...........................................................................................ATCACATTGCCAGGGATTTCCATTA...................................................... 25 2 1 3.00 3 0 3 0 0 0 0
...........................................................................................ATCACATTGTTAGGGATTTCCAA........................................................ 23 2 1 3.00 3 1 0 2 0 0 0

Anti-sense strand reads

CCACGGTCGACGACCGAGACGAGTCACGGGGGGCTGGGGACACGGTACCAGCCGACCCCAAGGACCCCTACCCTAAACGACGGACAGTGTTTAGTGTAACGGTCCCTAAAGGTTAGCTGGGACTCGGGACGGAGACCCCGGTGGCGACAGTGACAGTGACAGTGACGACT

******************************************..((((.((((((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).)))))).)).))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:32 AM