ID:

ssc-mir-219b

 Coordinate:

chr1:302806853-302806936 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.9 -46.9 -46.9
mature

star

  1. ssc-mir-219b  chr1:302806905-302806925 -
  2. ssc-mir-219a  chr7:29752753-29752773 -

Sense Strand Reads

TTTAAGGAGCGAAGCGGAACCCCGCAGGAGACTGGGGCCCTTAACTCAGGGGCTTCGCCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGCTGAGCTCCGGGCGCAACGGGGGCGGGAGTCGCAGGGACCGAGCTCAGCGCGGGAG

**********************************************..(((((((.(((((.(((.(((((..(((((((((((.....(((...)))....)))))))))))..)))))))).))))).)))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139076

testes		 SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes
........................................................................................................AGAATTGTGGCTGGACATCTGT.......................................................... 22 0 1 57.00 57 37 10 9 1 0 0
........................................................................................................AGAATTGTGGCTGGACATCTGA.......................................................... 22 1 1 6.00 6 5 0 1 0 0 0
........................................................................................................AGAATTGTGGCTGGACATCT............................................................ 20 0 1 3.00 3 3 0 0 0 0 0
........................................................................................................AGAATTGTGGCTGGACATCTG........................................................... 21 0 1 3.00 3 2 1 0 0 0 0
........................................................................................................AGAATTGTGGCTGGACATCTGTAA........................................................ 24 2 1 2.00 2 2 0 0 0 0 0
........................................................................................................AGAATTGTGGCTGGACATCTGTAT........................................................ 24 2 1 2.00 2 2 0 0 0 0 0
.............................................................TGATTGTCCAAACGCAATTCT...................................................................................................... 21 0 2 2.00 4 1 1 0 2 0 0
........................................................................................................AGAATTGTGGCTGGACATCTGTT......................................................... 23 1 1 2.00 2 0 0 1 1 0 0
.............................................................TGATTGTCCAAACGCAATTCTCGT................................................................................................... 24 1 2 2.00 4 0 1 1 0 1 1
........................................................................................................AGAATTGTGGCTGGACATCTGG.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AGAATTGTGGCTCGACCTCTGT.......................................................... 22 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................AGAATTGTGGCTCGACATCT............................................................ 20 1 1 1.00 1 0 0 0 1 0 0
........................................................................................................AGAATTGTGGCTGGACCTCTGT.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AGAATTGTGGCTGGGCATCTGT.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AGAATTGGGGCTGGACATCTGT.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................AGACTTGTGGCTGGACATCTGT.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................ATTGCGGCTGGACATCTGAG......................................................... 20 2 4 0.75 3 0 2 1 0 0 0
.............................................................TGATTGTCAAAACGCAATTCT...................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0
.............................................................TGATTGTCCAAACGTAATT........................................................................................................ 19 1 2 0.50 1 0 0 0 1 0 0
.............................................................TGATTGTCCAAACGCAATTC....................................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0
.............................................................TGATTGTCCAAACGTAATTC....................................................................................................... 20 1 2 0.50 1 0 0 0 1 0 0
.............................................................TGATTGTCCAAACGCAAT......................................................................................................... 18 0 2 0.50 1 0 0 0 1 0 0
...........................................................................................................ATTGCGGCTGGACATCTGA.......................................................... 19 2 8 0.13 1 0 0 1 0 0 0
.........................................................................................................................................GGGCGCAACGGGTGCCGG............................. 18 2 13 0.08 1 0 1 0 0 0 0

Anti-sense strand reads

AAATTCCTCGCTTCGCCTTGGGGCGTCCTCTGACCCCGGGAATTGAGTCCCCGAAGCGGTGACTAACAGGTTTGCGTTAAGAACATGCTCAGACGCCGGTTGGCTCTTAACACCGACCTGTAGACACCGACTCGAGGCCCGCGTTGCCCCCGCCCTCAGCGTCCCTGGCTCGAGTCGCGCCCTC

*******************************************..(((((((.(((((.(((.(((((..(((((((((((.....(((...)))....)))))))))))..)))))))).))))).)))))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR066810

testes
...........................................................TGACTAACAGGTTTGCGTTAAGA...................................................................................................... 23 0 1 9.00 9 2 4 3
......................................................................................................GCTCTTAACACCGACCTGTAG............................................................. 21 0 1 4.00 4 0 3 1
......................................................................................................GCTCTTAACACCGACCTGTAGA............................................................ 22 0 1 4.00 4 4 0 0
.....................................................................................................AGCTCTTAACACCGACCTGTAGA............................................................ 23 1 1 1.00 1 0 0 1
.......................................................................................................CTCTTAACACCGACCTGTAGA............................................................ 21 0 1 1.00 1 1 0 0
..............................................................CTAACAGGTTTGCGTTAAGA...................................................................................................... 20 0 2 1.00 2 0 1 1
.......................................................................................................CTCTTAACACCGACCTGTCGA............................................................ 21 1 1 1.00 1 1 0 0
..............................................................CTAACAGGTTTGCGTTAAGAA..................................................................................................... 21 0 1 1.00 1 0 0 1
................................................................................................................................GACTCGATGCCCGCG......................................... 15 1 20 0.10 2 0 0 2
...............................................................................................................................CGACTCGATGCCCGCG......................................... 16 1 13 0.08 1 0 0 1

Generated: 09/01/2015 at 11:22 AM