ID:ssc-mir-218b |
Coordinate:chr16:59686628-59686711 + |
Confidence:Known |
Class:Unknown |
Genomic Locale:intergenic |
[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -49.5 |
 |
| mature | star |
|
GTCCTCTCTCTGACGCTGCTTCCTGACCTTGACTCTGACCAGTCGCCGCGGGGCTTTCCTTTGTGCTTGATCTAACCATGTGGTGGAACGATGGAAACGGAACATGGTTCTGTCAAGCACCGCGGAAAGCTCCGCGCTCTCCTGCAGCATGGCCCGCCACCACCGCCGCCACCGCTGGACACCT
*********************************************.(((((((((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...)))))))))))))...********************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR066809 ovary |
SRR1274763 ovary |
SRR066810 testes |
SRR139075 testes |
SRR1274764 testes |
SRR139076 testes |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................TTGTGCTTGATCTAACCATGT....................................................................................................... | 21 | 0 | 3 | 115.00 | 345 | 262 | 20 | 38 | 10 | 14 | 1 |
| ............................................................TTGTGCTTGATCTAACCATGTG...................................................................................................... | 22 | 0 | 3 | 46.67 | 140 | 85 | 45 | 4 | 3 | 3 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGA..................................................................................................... | 23 | 1 | 3 | 44.00 | 132 | 113 | 6 | 9 | 3 | 1 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGT..................................................................................................... | 23 | 1 | 3 | 11.00 | 33 | 22 | 5 | 3 | 2 | 1 | 0 |
| ............................................................TTGTGCTTGATCTAACCATG........................................................................................................ | 20 | 0 | 3 | 7.67 | 23 | 11 | 5 | 3 | 3 | 1 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGG..................................................................................................... | 23 | 0 | 3 | 6.33 | 19 | 16 | 2 | 1 | 0 | 0 | 0 |
| .................................................................................GGTGGAACGATGGAAACGGAAC................................................................................. | 22 | 0 | 1 | 4.00 | 4 | 0 | 0 | 0 | 3 | 0 | 1 |
| ............................................................TTGTGCTTGATCTAACCATGTA...................................................................................................... | 22 | 1 | 3 | 2.33 | 7 | 3 | 1 | 0 | 1 | 2 | 0 |
| .................................................................................GGTGGAACGATGGAAACGGAA.................................................................................. | 21 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTT...................................................................................................... | 22 | 1 | 3 | 1.33 | 4 | 2 | 0 | 2 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGAT.................................................................................................... | 24 | 1 | 3 | 1.33 | 4 | 4 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................ATGGTTCTGTCAAGCACCGCGA........................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGAAG................................................................................................... | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................CTTTGTGCTTGATCTAACCATG........................................................................................................ | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TGTGCTTGATCTAACCATGT....................................................................................................... | 20 | 0 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................TGGAACGATGGAAACGGAACATGGTTC.......................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................................................CATGGTTCTGTCAAGCACCGCG............................................................ | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................ATGGTTCTGTCAAGCACCGCGT........................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGGTGGAAC............................................................................................... | 29 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGGA.................................................................................................... | 24 | 1 | 3 | 0.67 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATA........................................................................................................ | 20 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATAT....................................................................................................... | 21 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGC..................................................................................................... | 23 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCAT......................................................................................................... | 19 | 0 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACTATGT....................................................................................................... | 21 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................TTGAGCTTGATCTAACCATGTGA..................................................................................................... | 23 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................CTGTGCTTGATCTAACCATGTG...................................................................................................... | 22 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................ATTTTGTGCTTGATCTAACCATGTGA..................................................................................................... | 26 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGTAA................................................................................................... | 25 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGTT.................................................................................................... | 24 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................TTGTGCTTGATCTAAC............................................................................................................ | 16 | 0 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTAA..................................................................................................... | 23 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................TTGTGCTTGATCTAACCATGTGGT.................................................................................................... | 24 | 0 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................CTTGTGCTTGATCTAACCATGTGA..................................................................................................... | 24 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................TGTGCTTGATCTAACCATGTGG..................................................................................................... | 22 | 0 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................ATTTTGTGTTTGATCTAACCATGT....................................................................................................... | 24 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
|
CAGGAGAGAGACTGCGACGAAGGACTGGAACTGAGACTGGTCAGCGGCGCCCCGAAAGGAAACACGAACTAGATTGGTACACCACCTTGCTACCTTTGCCTTGTACCAAGACAGTTCGTGGCGCCTTTCGAGGCGCGAGAGGACGTCGTACCGGGCGGTGGTGGCGGCGGTGGCGACCTGTGGA
*********************************************.(((((((((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...)))))))))))))...********************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total |
|---|
Generated: 09/01/2015 at 11:29 AM