ID:

ssc-mir-217-1

 Coordinate:

chr3:90065707-90065813 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.2 -24.0 -24.0

Sense Strand Reads

ATAGGAACAAAGGGAATATTTGCTGCATTTGGAAATAAGTGATACTTGACATAATTATTACAGAGTTTTTGATGTCGCAGATACTGCATCAGGAACTGATTGGATAAGAATTGGTCACCATCAGTTCTTAATGCATTGCCTTCAGCATCTAAACAAGCATCAGTAAACATCTCAAGTTAGATTTGCTATGATGTATTTTTGGTTATA

*****************************************************************.....(((((...((.((.(((((.((((((((((..(((........)))...)))))))))).))))).)).))...))))).......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR139076

testes		 SRR066810

testes		 SRR066809

ovary		 SRR1274764

testes
................................................................................ATACTGCATCAGGAACTGATTG......................................................................................................... 22 0 1 347.00 347 297 43 5 2 0
................................................................................ATACTGCATCAGGAACTGATT.......................................................................................................... 21 0 1 87.00 87 68 18 1 0 0
.................................................................................TACTGCATCAGGAACTGATTGGA....................................................................................................... 23 0 1 82.00 82 51 5 20 6 0
.................................................................................TACTGCATCAGGAACTGATTGG........................................................................................................ 22 0 1 52.00 52 43 3 5 1 0
................................................................................ATACTGCATCAGGAACTGATTGG........................................................................................................ 23 0 1 44.00 44 34 7 3 0 0
................................................................................ATACTGCATCAGGAACTGATTGA........................................................................................................ 23 1 1 23.00 23 20 3 0 0 0
................................................................................ATACTGCATCAGGAACTGATTGT........................................................................................................ 23 1 1 19.00 19 17 2 0 0 0
................................................................................ATACTGCATCAGGAACTGATTT......................................................................................................... 22 1 1 7.00 7 3 4 0 0 0
................................................................................ATACTGCATCAGGAACTGAT........................................................................................................... 20 0 1 6.00 6 3 3 0 0 0
.................................................................................TACTGCATCAGGAACTGATTG......................................................................................................... 21 0 1 6.00 6 6 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATTA......................................................................................................... 22 1 1 6.00 6 6 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATTGGT....................................................................................................... 24 1 1 6.00 6 6 0 0 0 0
.................................................................................TACTGCATCAGGAACTGATTGGT....................................................................................................... 23 1 3 4.33 13 12 1 0 0 0
.................................................................................TACTGCATCAGGAACTGATTGGAA...................................................................................................... 24 1 1 4.00 4 4 0 0 0 0
..................................................................................ACTGCATCAGGAACTGATTGGA....................................................................................................... 22 0 1 3.00 3 2 0 1 0 0
.................................................................................TACTGCATCAGGAACTGATTGGAT...................................................................................................... 24 0 1 3.00 3 0 0 2 0 1
................................................................................ATACTGTATCAGGAACTGATT.......................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
.......................................................................................................................ATCAGTTCTTAATGCATTGCCT.................................................................. 22 0 1 3.00 3 1 0 2 0 0
................................................................................ATACTTCATCAGGAACTGATTG......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
................................................................................ATACTGTATCAGGAACTGATTG......................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
................................................................................ATACTGCATCCGGAACTGATTG......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
.................................................................................TATTGCATCAGGAACTGATTGG........................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
.................................................................................TACTGCATCAGGAACTGATTGA........................................................................................................ 22 1 1 2.00 2 1 0 1 0 0
................................................................................ATACTGCATCAGGAACTGATTGGA....................................................................................................... 24 0 1 2.00 2 1 0 1 0 0
................................................................................ATACTGCATCAGGAGCTGATTG......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
.................................................................................TACTGCATCAGGAACTGA............................................................................................................ 18 0 1 2.00 2 2 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATGG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATTTG........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
................................................................................ATACCGCATCAGGAACTGATT.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCATTAGGAACTGATTGGA....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGCACTGATTG......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.................................................................................TACTGCATCAGGAACTGATT.......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCCTCAGGAACTGATTGGA....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCATTAGGAACTGATTGG........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCACGAACTGATTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATTAT........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0
......................................................................................CATCAGGAACTGATTGGA....................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
.................................................................................TACTGCATCAGGCACTGATTGGA....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
................................................................................ACACTGCATCAGGAACTGATTGG........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................................................ACTGCATCAGGAACTGATTGG........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCACCAGGAACTGATTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCATCAGGACCTGATTGGA....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCATCAGGCACTGATTGG........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTACATCAGGAACTGATTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATC.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCATCAGGAACTGAT........................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................................CATCAGTTCTTAATGCATTGCC................................................................... 22 0 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATTGAA....................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................ACACTGCATCAGGAACTGATTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATTAA........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGTACTGATTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGCACTGATTGG........................................................................................................ 23 1 1 1.00 1 0 1 0 0 0
................................................................................GTACTGCATCAGGAACTGATTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................................TACTGCACCAGGATCTGATTGG........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................................CATCAGTTCTTAATGCATTGCT................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGT............................................................................................................ 19 1 2 0.50 1 1 0 0 0 0
................................................................................CTACTGCATCAGGAACTGATTGG........................................................................................................ 23 1 3 0.33 1 1 0 0 0 0
................................................................................ATCCTGCATCAGGAACTGATTG......................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
................................................................................CTACTGCATCAGGAACTGATTG......................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
................................................................................ATCCTGCATCAGGAACTGATTGT........................................................................................................ 23 2 4 0.25 1 1 0 0 0 0
................................................................................ATACTGCATCAGGAACTGATAT......................................................................................................... 22 2 5 0.20 1 1 0 0 0 0

Anti-sense strand reads

TATCCTTGTTTCCCTTATAAACGACGTAAACCTTTATTCACTATGAACTGTATTAATAATGTCTCAAAAACTACAGCGTCTATGACGTAGTCCTTGACTAACCTATTCTTAACCAGTGGTAGTCAAGAATTACGTAACGGAAGTCGTAGATTTGTTCGTAGTCATTTGTAGAGTTCAATCTAAACGATACTACATAAAAACCAATAT

***************************************************.....(((((...((.((.(((((.((((((((((..(((........)))...)))))))))).))))).)).))...))))).......***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:34 AM