ID:

ssc-mir-215

 Coordinate:

chr10:11963149-11963244 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.4 -38.3 -38.1
mature

  1. ssc-mir-215  chr10:11786622-11786643 -
  2. ssc-mir-215  chr10:11963168-11963189 +
star

Sense Strand Reads

AGTCGCTTTAGAAAAGATCCAAAAACGGAAGAGGATCCGAGTCATTGTTAAGAGATGGTGTACAGGAAAATGACCTATGAATTGACAGACAATGTGGCTAAATCTGTCTGTCATTTCTGTAGGCCAATATTCTGTATATCTCTGCTACTCCAAAATCAGAAATCAACTACACCATGCAAGCAACACAATGGTAGAT

***********************************...((((........(((((.(((((((((((...((.((((((((.(((((((((((........)).))))))))).))).))))).))...)))))))))))))).))))))...........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274764

testes		 SRR1274763

ovary
.....................................................................ATGACCTATGAATTGACAGACA......................................................................................................... 22 0 2 143.00 286 142 122 18 1 2 1
.....................................................................ATGACCTATGAATTGACAGAC.......................................................................................................... 21 0 2 34.50 69 30 26 11 2 0 0
.....................................................................ATGACCTATGAATTGACAGA........................................................................................................... 20 0 2 22.00 44 22 20 2 0 0 0
..................................................................TTAATGACCTATGAATTGACAGAC.......................................................................................................... 24 2 2 7.50 15 11 4 0 0 0 0
.....................................................................ATGACCTATGAATTGACAGACT......................................................................................................... 22 1 2 5.50 11 11 0 0 0 0 0
..................................................................ATAATGACCTATGAATTGACAGACA......................................................................................................... 25 1 2 3.00 6 6 0 0 0 0 0
..................................................................TTAATGACCTATGAATTGACAGACA......................................................................................................... 25 2 2 2.50 5 4 1 0 0 0 0
......................................................................TGACCTATGAATTGACAGCCAA........................................................................................................ 22 1 3 2.33 7 0 0 3 4 0 0
..................................................................ATAATGACCTATGAATTGACAGAC.......................................................................................................... 24 1 2 2.00 4 4 0 0 0 0 0
......................................................................TGACCTATGAATTGACAGACA......................................................................................................... 21 0 2 1.00 2 1 1 0 0 0 0
......................................................................TGACCTATGAATTGACAGCCAAT....................................................................................................... 23 1 3 1.00 3 3 0 0 0 0 0
......................................................................TGACCTATGAATTGACAGCCAAA....................................................................................................... 23 2 3 0.67 2 0 1 1 0 0 0
..................................................................TAAATGACCTATGAATTGACAGAC.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
.....................................................................ATGACCTATGAATTGACAGACAA........................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0
.....................................................................ATGACCTATGAATTGACAGACAT........................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
......................................................................TGACCTATGAATTGACAGA........................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0
.....................................................................GTGACCTATGAATTGACAGACA......................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0
.....................................................................ATGACCTATGAATTGACAG............................................................................................................ 19 0 2 0.50 1 1 0 0 0 0 0
......................................................................TGACCTATGAATTGACAGCCAAAAT..................................................................................................... 25 3 2 0.50 1 0 0 0 1 0 0
.....................................................................ATGACCTATGAATTGACAGACG......................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................ATGACCTATGACTTGACAGACA......................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0
.....................................................................ATAACCTATGAATTGACAGACA......................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................CATGACCTATGAATTGACAGAC.......................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................ATGACTTATGAATTGACAGACA......................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................ATGACCTATGACTTGACAGAC.......................................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0
......................................................................TGACCTATGAATTGACAGACAT........................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
...................................................................TAATGACCTATGAATTGACAGACA......................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0
.....................................................................ATGACCTATGAATTGACAGCG.......................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0
.....................................................................TTGACCTATGAATTGACAG............................................................................................................ 19 1 3 0.33 1 1 0 0 0 0 0
.....................................................................ATGACCTATGAATTGACAGCC.......................................................................................................... 21 1 3 0.33 1 0 0 0 0 1 0
......................................................................TGACCTATGAATTGACAGCCAAAGA..................................................................................................... 25 3 3 0.33 1 0 0 0 1 0 0
......................................................................TGACCTATGAATTGACAGCCAAC....................................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0
.....................................................................ATGACCTATGAATTGACAGCCA......................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0
..................................................................ATACTGACCTATGAATTGACAG............................................................................................................ 22 2 4 0.25 1 1 0 0 0 0 0

Anti-sense strand reads

TCAGCGAAATCTTTTCTAGGTTTTTGCCTTCTCCTAGGCTCAGTAACAATTCTCTACCACATGTCCTTTTACTGGATACTTAACTGTCTGTTACACCGATTTAGACAGACAGTAAAGACATCCGGTTATAAGACATATAGAGACGATGAGGTTTTAGTCTTTAGTTGATGTGGTACGTTCGTTGTGTTACCATCTA

***********************************...((((........(((((.(((((((((((...((.((((((((.(((((((((((........)).))))))))).))).))))).))...)))))))))))))).))))))...........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:23 AM