ID:

ssc-mir-20b-1

 Coordinate:

chrX:126199775-126199854 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.2 -38.5 -38.3

Sense Strand Reads

TGCGCAGCATACAGTTTTTTTTGTTGTTGTTTCCAGGAGAAGATCAGGTCCCGGCAGTACCAAAGTGCTCACAGTGCAGGTAGGTTTTGCATTACTCTACTGTAGTGTGGGCACTTCCAGTACTCTTGGATAACGCATCTCTTGTTGATGGTGAGGATATTCAGACACTGCTACTTACAG

*********************************************..((((.((.(((((..(((((((((((.(((((.(((((........)).)))))))).)))))))))))...))))))).))))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
............................................................CAAAGTGCTCACAGTGCAGGTAG................................................................................................. 23 0 1 55.00 55 8 16 23 5 3 0
............................................................CAAAGTGCTTACAGTGCAGGTAGAAT.............................................................................................. 26 3 3 51.33 154 76 77 1 0 0 0
............................................................CAAAGTGCTCACAGTGCAGGTAT................................................................................................. 23 1 1 39.00 39 18 7 7 7 0 0
............................................................CAAAGTGCTCACAGTGCAGGTA.................................................................................................. 22 0 1 22.00 22 14 4 3 1 0 0
.............................................................AAAGTGCTGACAGTGCAGATA.................................................................................................. 21 2 8 19.25 154 73 75 6 0 0 0
............................................................CAAAGTGCTGACAGTGCAGATA.................................................................................................. 22 2 2 16.00 32 18 13 1 0 0 0
...........................................................CCAAAGTGCTTACAGTGCAGGTAG................................................................................................. 24 1 2 11.50 23 12 10 1 0 0 0
............................................................CAAAGTGCTCATAGTGCAGGTAG................................................................................................. 23 1 1 9.00 9 2 7 0 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGG................................................................................................ 24 1 2 8.00 16 8 8 0 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTCC.............................................................. 20 0 1 7.00 7 0 0 7 0 0 0
............................................................CAAAGTGCTCACAGTGCAGGTAGT................................................................................................ 24 1 2 6.50 13 1 5 4 1 0 2
............................................................CAAAGTGCTCACAGTGCAGGTAA................................................................................................. 23 1 1 6.00 6 0 3 2 1 0 0
............................................................CAAAGTGCTCACAGTGCAGGT................................................................................................... 21 0 1 5.00 5 3 1 0 0 1 0
............................................................CAAAGTGCTTACAGTGCAGGTAAG................................................................................................ 24 2 2 5.00 10 5 5 0 0 0 0
............................................................TAAAGTGCTGACAGTGCAGGTA.................................................................................................. 22 2 4 4.25 17 10 7 0 0 0 0
.................................................................................................TACTGTAGTGTGGGCACTTCCA............................................................. 22 0 1 4.00 4 0 0 3 1 0 0
............................................................CAAAGTGCTCACAGTGCAGGTAGA................................................................................................ 24 1 1 4.00 4 1 3 0 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTCCAGT........................................................... 23 0 1 4.00 4 0 0 4 0 0 0
............................................................CAAAGTGCTGTCCGTGCAGGTAG................................................................................................. 23 3 3 3.67 11 6 5 0 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTTCA............................................................. 21 1 1 3.00 3 0 0 3 0 0 0
.................................................................................................TACTGTAGTGTGGGCACTTCT.............................................................. 21 1 1 3.00 3 0 0 2 1 0 0
.................................................................................................TACTGTAGTGTGGGCACTTCC.............................................................. 21 0 1 3.00 3 0 0 2 1 0 0
............................................................TAAAGTGCTGACAGTGCAGGTAG................................................................................................. 23 2 4 2.75 11 6 5 0 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGAT............................................................................................... 25 2 3 2.67 8 4 4 0 0 0 0
............................................................CAAAGTGCTCACAGTGCAGG.................................................................................................... 20 0 1 2.00 2 0 0 0 0 1 1
.............................................................AAAGTGCTCACAGTGCAGGTAT................................................................................................. 22 1 1 2.00 2 0 1 1 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTC............................................................... 19 0 1 2.00 2 0 0 2 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTCCTA............................................................ 22 2 1 2.00 2 0 0 0 2 0 0
............................................................CAAAGTGCTCACAGTGCAGGA................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGTTT.............................................................................................. 26 2 3 1.67 5 2 2 0 0 1 0
............................................................TAAAGTGCTCACAGTGCAGATA.................................................................................................. 22 2 2 1.50 3 3 0 0 0 0 0
............................................................CAAAGTGCTGACAGTGCAGAT................................................................................................... 21 2 6 1.17 7 5 2 0 0 0 0
............................................................TAAAGTGCTCACAGTGCAGGTAG................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TACTGTAGTGTGGGCACTTA............................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.............................................................AAAGTGCTCACAGTGCAGGGAG................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................CCAAAGTGCTTACAGTGCAGGTA.................................................................................................. 23 1 2 1.00 2 1 1 0 0 0 0
.............................................................AAAGTGCTCACAGTGCAGGT................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
............................................................CAAAGTGCTCACAGTGCAGGTGA................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................CAAAGTGCTCATAGTGCAGGTAGA................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
...........................................................CCAAAGTGCTTACAGTGCAGGT................................................................................................... 22 1 2 1.00 2 1 1 0 0 0 0
.............................................................AAAGTGCTCACAGTGCAGGTAG................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0
............................................................CAAAGTGCTCATAGTGCAGGTA.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................TCTACTGTAGTGTGGGCACTTTAA............................................................. 24 2 1 1.00 1 0 0 1 0 0 0
............................................................CAAAGTGCTCACAGTGCAGGTAGTT............................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................CACAGTGCTCACAGTGCAGGTAT................................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
................................................................................................CTACTGTAGTGTGGGCACTTAA.............................................................. 22 2 1 1.00 1 0 0 0 1 0 0
............................................................CAAAGTGCTCACAGTGCAGGTTA................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 1
............................................................CAAAGTGCTCACAGTGCAGGTAGAA............................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
............................................................CAAAGTGCTCACAGTGCAGGTAGC................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 1
............................................................CAACGTGCTCACAGTGCAGGTAT................................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..........................................................AACAAAGTGCTTACAGTGCAGGTA.................................................................................................. 24 2 2 1.00 2 0 0 2 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGATT.............................................................................................. 26 2 2 1.00 2 2 0 0 0 0 0
............................................................CAAAGTGCTCATAGTGCAGGTAGAAT.............................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0
..........................................................ACCAAAGTGCTTACAGTGCAGGTAG................................................................................................. 25 1 1 1.00 1 0 0 0 0 1 0
...............................................................................................TCTACTGTAGTGTGGGCACTTCC.............................................................. 23 0 1 1.00 1 0 0 1 0 0 0
............................................................CAAAGTGCTCACAGTGCAGGGAG................................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTCCCG............................................................ 22 1 1 1.00 1 0 0 0 1 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAAGA............................................................................................... 25 3 2 1.00 2 1 1 0 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGGT............................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................AAAGTGCTGACAGTGCAGATAG................................................................................................. 22 2 4 1.00 4 2 2 0 0 0 0
...........................................................CCAAAGTGCTCACAGTGCAGGTAT................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAACAAAGTGCTTACAGTGCAGGTAGA................................................................................................ 27 3 2 0.50 1 1 0 0 0 0 0
............................................................AAAAGTGCTCACAGTGCAGG.................................................................................................... 20 1 2 0.50 1 0 0 1 0 0 0
............................................................CAAAGTGCTCACGGTGCAGGTAGT................................................................................................ 24 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTTAA............................................................. 21 2 2 0.50 1 0 0 1 0 0 0
............................................................CAAAGTGCTCATAGTGCAGGT................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...........................................................CCAAAGTGCTTACAGTGCAGGTAGA................................................................................................ 25 2 2 0.50 1 1 0 0 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGGA............................................................................................... 25 2 2 0.50 1 0 1 0 0 0 0
..................................................................................................ACTGTAGTGTGGGCCCTTTCA............................................................. 21 2 2 0.50 1 0 0 1 0 0 0
..........................................................AGCAAAGTGCTTACAGTGCAGGTA.................................................................................................. 24 2 2 0.50 1 0 1 0 0 0 0
...........................................................CCAAAGTGCTTACAGTGCAGGTAT................................................................................................. 24 2 2 0.50 1 0 1 0 0 0 0
............................................................CAAAGTGCTGATCGTGCAGGTAG................................................................................................. 23 3 4 0.50 2 2 0 0 0 0 0
............................................................CAAAGTGCTCATAGTGCAGG.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
............................................................CAAAGTGCTGACAGTGCAG..................................................................................................... 19 1 2 0.50 1 0 0 1 0 0 0
............................................................CAAAGTGCTCTTCGTGCAGGTA.................................................................................................. 22 3 7 0.43 3 0 2 0 0 1 0
............................................................TAAAGTGCTCACAGTGCAGAT................................................................................................... 21 2 7 0.43 3 2 1 0 0 0 0
............................................................CAAAGTGCTGTTAGTGCAGGTAG................................................................................................. 23 3 5 0.40 2 2 0 0 0 0 0
............................................................CAAAGTGCTCTTCGTGCAGGTAG................................................................................................. 23 3 3 0.33 1 0 1 0 0 0 0
............................................................CAAAGTGCTTACAGTGCAGGTAGAATT............................................................................................. 27 3 3 0.33 1 0 1 0 0 0 0
.............................................................AAAGTGCTTACAGTGCAGGTAGG................................................................................................ 23 1 3 0.33 1 0 1 0 0 0 0
.......................................................GGTAGCAAAGTGCTTACAGTGCA...................................................................................................... 23 3 4 0.25 1 0 0 1 0 0 0
............................................................TAAAGTGCTGACAGTGCAGGT................................................................................................... 21 2 8 0.25 2 2 0 0 0 0 0
..................................................................................................ACTGTAGTGTGGGCACTTAT.............................................................. 20 2 5 0.20 1 0 0 1 0 0 0
............................................................TAAAGTGCTGACAGTGCAGATAGG................................................................................................ 24 3 5 0.20 1 1 0 0 0 0 0
............................................................TAAAGTGCTGACAGTGCAGCTA.................................................................................................. 22 3 20 0.20 4 3 1 0 0 0 0
............................................................TAAAGTGCTGACAGTGCAGGTAGA................................................................................................ 24 3 6 0.17 1 1 0 0 0 0 0
............................................................GAAAGTGCTGACAGTGCAGATA.................................................................................................. 22 3 20 0.15 3 3 0 0 0 0 0
............................................................TAAAGTGCTGACAGTGCAGGTAT................................................................................................. 23 3 7 0.14 1 0 0 1 0 0 0
............................................................CAAAGTGCTGACAGTGCAGATAT................................................................................................. 23 3 7 0.14 1 1 0 0 0 0 0
............................................................CAAAGTGCTGACAGTGCAGATAA................................................................................................. 23 3 9 0.11 1 0 1 0 0 0 0
............................................................CAAAGTGCTGATCGTGCAGGTA.................................................................................................. 22 3 9 0.11 1 0 1 0 0 0 0
.........................................................AAACAAAGTGCTTACAGTGCAGG.................................................................................................... 23 3 11 0.09 1 0 0 1 0 0 0
..............TTTTTTTTGATGTTGTTACCGGG............................................................................................................................................... 23 3 20 0.05 1 0 0 1 0 0 0
.............................................................AAAGTGCTGACAGTGCAGATAT................................................................................................. 22 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

ACGCGTCGTATGTCAAAAAAAACAACAACAAAGGTCCTCTTCTAGTCCAGGGCCGTCATGGTTTCACGAGTGTCACGTCCATCCAAAACGTAATGAGATGACATCACACCCGTGAAGGTCATGAGAACCTATTGCGTAGAGAACAACTACCACTCCTATAAGTCTGTGACGATGAATGTC

***********************************************..((((.((.(((((..(((((((((((.(((((.(((((........)).)))))))).)))))))))))...))))))).))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:44 AM