ID:

ssc-mir-20a

 Coordinate:

chr11:66610513-66610583 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.9 -38.9 -38.9

Sense Strand Reads

TTATTGTGTCGATGTAGAATCTGCCTGGTGTATCTGATACGACAGCTTCTGTAGCACTAAAGTGCTTATAGTGCAGGTAGTGTTTAGTTATCTACTGCATTATGAGCACTTAAAGTACTGCTAGCTGTAGAACTCCAGCCTCGGCCTGTCGCCCAGTCAAACTGTCCAGTT

******************************************(((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274763

ovary		 SRR139076

testes		 SRR1274764

testes
.........................................................TAAAGTGCTTATAGTGCAGGTAG........................................................................................... 23 0 1 7005.00 7005 3520 2805 386 169 72 53
.........................................................TAAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 1 1 4673.00 4673 2044 2588 13 12 7 9
.........................................................TAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 0 1 1712.00 1712 800 791 10 41 5 65
.........................................................TAAAGTGCTTATAGTGCAGGTA............................................................................................ 22 0 1 924.00 924 415 242 223 24 17 3
.........................................................TAAAGTGCTTATAGTGCAGGTAT........................................................................................... 23 1 1 440.00 440 125 70 191 16 36 2
.........................................................TAAAGTGCTTATAGTGCAGGT............................................................................................. 21 0 1 245.00 245 57 41 109 25 7 6
.........................................................TAAAGTGCTTATAGTGCAGGTAA........................................................................................... 23 1 1 150.00 150 13 15 95 6 20 1
.........................................................TAAAGTGCTTATAGTGCAGG.............................................................................................. 20 0 1 111.00 111 47 36 16 9 2 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAA......................................................................................... 25 2 1 103.00 103 30 72 0 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAT........................................................................................ 26 2 1 70.00 70 32 38 0 0 0 0
....................................ATACGACAGCTTCTGTAGCAC.................................................................................................................. 21 0 1 62.00 62 22 14 19 0 7 0
.............................................................................................ACTGCATTACGAGCACTTCCAGT....................................................... 23 3 3 50.33 151 68 83 0 0 0 0
..........................................................AAAGTGCTGTTCGTGCAGGTAGT.......................................................................................... 23 3 4 44.25 177 88 86 2 0 1 0
...................................GATACGACAGCTTCTGTAGCAC.................................................................................................................. 22 0 1 33.00 33 7 9 16 0 1 0
.........................................................TAAAGTGCTGACAGTGCAGATAGT.......................................................................................... 24 3 4 30.75 123 66 54 0 0 3 0
..........................................................AAAGTGCTTATAGTGCAGGTAG........................................................................................... 22 0 1 26.00 26 13 9 3 0 1 0
.............................................................GTGCTTATAGTGCAGGTAG........................................................................................... 19 0 1 25.00 25 11 14 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGA............................................................................................. 21 1 1 23.00 23 17 4 2 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGG.......................................................................................... 24 1 1 22.00 22 13 8 1 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAGT....................................................... 23 0 1 21.00 21 6 0 12 2 1 0
........................................................CTAAAGTGCTTATAGTGCAGGTAG........................................................................................... 24 0 1 19.00 19 9 10 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTATT.......................................................................................... 24 1 1 18.00 18 8 8 1 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTA......................................................................................... 25 1 1 18.00 18 6 10 1 0 0 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGTT......................................................................................... 25 1 1 18.00 18 10 7 0 0 0 1
.........................................................CAAAGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 2 13.00 26 17 6 1 0 2 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAA........................................................................................ 26 3 1 11.00 11 5 5 0 0 1 0
..............................................................TGCTTATAGTGCAGGTAG........................................................................................... 18 0 1 10.00 10 5 5 0 0 0 0
..............................................................................................CTGCATTATGAGCACTTAAAGT....................................................... 22 0 1 10.00 10 6 3 1 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGGTAG........................................................................................... 23 1 3 10.00 30 6 22 2 0 0 0
.........................................................TAAAGTGCTTATAGTGCA................................................................................................ 18 0 1 10.00 10 3 0 7 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 23 0 1 10.00 10 7 2 0 0 0 1
...........................................................AAGTGCTTATAGTGCAGGTAG........................................................................................... 21 0 1 9.00 9 2 5 2 0 0 0
.........................................................TAAAGTGCTTATAGTGCAG............................................................................................... 19 0 1 9.00 9 0 1 7 0 1 0
.........................................................TGAAGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 9.00 9 6 3 0 0 0 0
.........................................................TAAAGTGCTGATAGTGCAGATA............................................................................................ 22 2 2 8.50 17 12 5 0 0 0 0
.........................................................TAAGGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 8.00 8 5 2 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAT......................................................................................... 25 2 1 8.00 8 3 4 0 1 0 0
........................................................ATAAAGTGCTTATAGTGCAGGTA............................................................................................ 23 1 1 8.00 8 0 0 6 0 2 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTTT........................................................................................ 26 1 1 8.00 8 2 2 3 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTT............................................................................................ 22 1 1 7.00 7 0 1 5 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTGG........................................................................................... 23 1 1 7.00 7 5 0 2 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAG........................................................ 22 0 1 7.00 7 1 2 2 2 0 0
.............................................................................................ACTGCATTACGAGCACTTCCAG........................................................ 22 3 8 6.25 50 23 27 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGC.......................................................................................... 24 1 1 6.00 6 2 4 0 0 0 0
.........................................................TAAAGCGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 6.00 6 4 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTATA.......................................................................................... 24 2 1 6.00 6 2 1 2 0 0 1
..........................................................AAAGTGCTTATAGTGCAGGTA............................................................................................ 21 0 1 6.00 6 2 2 2 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 23 1 1 6.00 6 5 1 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTA........................................................... 19 0 1 6.00 6 0 2 4 0 0 0
.........................................................TAAAGTGCTGTTCGTGCAGGTAG........................................................................................... 23 3 3 5.33 16 5 7 3 0 0 1
.........................................................TAAAGTGCTTATAGTGCAGGTTT........................................................................................... 23 2 1 5.00 5 0 0 4 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAGA.......................................................................................... 24 2 1 5.00 5 2 3 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCGGGTAG........................................................................................... 23 1 1 5.00 5 3 2 0 0 0 0
..........................................................AAAGTGCTGTTCGTGCAGGTAGTGT........................................................................................ 25 3 1 5.00 5 3 2 0 0 0 0
.........................................................TAAAGTGCTTATAGCGCAGGTAG........................................................................................... 23 1 1 5.00 5 1 2 0 2 0 0
.........................................................TAAAGTGCTTATAGTGCAGGAT............................................................................................ 22 2 1 5.00 5 2 2 0 1 0 0
.........................................................TAAAGTGCTGATAGTGCAGAT............................................................................................. 21 2 3 4.67 14 5 6 3 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGTA............................................................................................ 22 2 4 4.25 17 10 7 0 0 0 0
......................................................ATTTAAAGTGCTTATAGTGCAGGTAG........................................................................................... 26 3 1 4.00 4 3 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAGC........................................................................................ 26 2 1 4.00 4 1 3 0 0 0 0
.........................................................TAAAGTGCTTATAGCGCAGGTAGA.......................................................................................... 24 2 1 4.00 4 1 3 0 0 0 0
.............................................................GTGCTTATAGTGCAGG.............................................................................................. 16 0 1 4.00 4 2 2 0 0 0 0
.........................................................TAAAGTGCTTATGGTGCAGGTAG........................................................................................... 23 1 1 4.00 4 3 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAAT.......................................................................................... 24 1 1 4.00 4 0 3 1 0 0 0
...........................................................AAGTGCTGTTCGTGCAGGTAGTG......................................................................................... 23 3 1 4.00 4 4 0 0 0 0 0
.........................................................TAAAGTACTTATAGTGCAGGTAG........................................................................................... 23 1 1 4.00 4 3 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAAGA......................................................................................... 25 3 1 4.00 4 2 2 0 0 0 0
.........................................................TAAAGTGCCTATAGTGCAGGTAG........................................................................................... 23 1 1 4.00 4 2 2 0 0 0 0
.........................................................TAAAGCGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 4.00 4 1 2 0 0 0 1
.........................................................CAAAGTGCTTATAGTGCAGGTA............................................................................................ 22 1 2 4.00 8 6 1 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGATA............................................................................................ 22 1 1 4.00 4 1 3 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAT........................................................................................... 23 2 1 3.00 3 0 0 3 0 0 0
............................................................AGTGCTTATAGTGCAGGTAG........................................................................................... 20 0 1 3.00 3 2 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAGT....................................................................................... 27 3 1 3.00 3 0 1 0 1 0 1
.........................................................TAAAGTGCTTATAGTGCCGGTAGA.......................................................................................... 24 2 1 3.00 3 1 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTGT........................................................................................ 26 0 1 3.00 3 0 2 0 1 0 0
...............................ATCTGATACGACAGCTTCTGTAGCAC.................................................................................................................. 26 0 1 3.00 3 0 1 2 0 0 0
.........................................................TAAAGTGCTCATAGTGCAGGTAG........................................................................................... 23 1 1 3.00 3 0 2 1 0 0 0
.................................CTGATACGACAGCTTCTGTAGCAC.................................................................................................................. 24 0 1 3.00 3 0 1 1 0 1 0
...............................................................GCTTATAGTGCAGGTAG........................................................................................... 17 0 1 3.00 3 0 3 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGATT........................................................................................ 26 2 1 3.00 3 1 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTAT........................................................................................ 26 1 1 3.00 3 2 1 0 0 0 0
................................TCTGATACGACAGCTTCTGTAGCAC.................................................................................................................. 25 0 1 3.00 3 0 0 1 0 2 0
.........................................................TAAAGTGCTTATAGTGCATGTAG........................................................................................... 23 1 1 3.00 3 1 1 0 0 1 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGGA......................................................................................... 25 2 1 3.00 3 2 0 1 0 0 0
.........................................................TAAAGTGTTTATAGTGCAGGTAG........................................................................................... 23 1 1 3.00 3 2 0 1 0 0 0
.........................................................TACAGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 3.00 3 0 1 1 0 1 0
.........................................................TAAAGTGCTTATAGTGCGGGTAGA.......................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0
.............................................................GTGCTTATAGTGCAGGTAGT.......................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGAT........................................................................................... 23 2 1 3.00 3 0 0 2 0 1 0
.........................................................TAAAGTGCTTATAGTGCAGGTAAA.......................................................................................... 24 2 1 3.00 3 0 2 0 0 1 0
.........................................................TAAAGTGCTTATAGTGCGGGTAGT.......................................................................................... 24 1 1 3.00 3 1 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCTGGTAGA.......................................................................................... 24 2 1 3.00 3 2 1 0 0 0 0
.........................................................TAAAGTGCTTGTAGTGCAGGTAG........................................................................................... 23 1 1 3.00 3 2 0 1 0 0 0
.........................................................TAAGGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 3.00 3 1 2 0 0 0 0
...........................................................AAGTGCTGTTCGTGCAGGTAGTGT........................................................................................ 24 3 1 3.00 3 1 2 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGTAG........................................................................................... 23 2 4 2.75 11 6 5 0 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGGTA............................................................................................ 22 1 3 2.67 8 3 2 3 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGGTAGT.......................................................................................... 24 1 2 2.50 5 2 3 0 0 0 0
.........................................................TGAAGTGCTTATAGTGCAGGTA............................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGCGCTTATAGTGCAGGTAT........................................................................................... 23 2 1 2.00 2 0 0 1 0 1 0
........................................................ATAAAGTGCTTATAGTGCAGGTAA........................................................................................... 24 2 1 2.00 2 0 0 2 0 0 0
.........................................................GAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAG........................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAC........................................................................................... 23 1 1 2.00 2 1 0 0 0 0 1
........................................................ATAAAGTGCTTATAGTGCAGGTAT........................................................................................... 24 2 1 2.00 2 1 0 0 0 1 0
.........................................................TAAAGTGCTTATAGTGCAGGCA............................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAGA........................................................................................ 26 2 1 2.00 2 0 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTCA........................................................................................ 26 2 1 2.00 2 0 0 2 0 0 0
.........................................................TAAAGTGCTTATAGTTCAGGTA............................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAGT.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
.........................................................CAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 2 2.00 4 1 2 1 0 0 0
.....................................TACGACAGCTTCTGTAGCAC.................................................................................................................. 20 0 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGAGA.......................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................ACTGCATTACGAGCACTTCCAGTA...................................................... 24 3 1 2.00 2 0 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGAT............................................................................................. 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................AAGTGCTTATAGTGCAGGTAGT.......................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAT........................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTAAA....................................................................................... 27 3 1 2.00 2 0 0 0 2 0 0
.........................................................TAAGGTGCTTATAGTGCAGGTA............................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0
.........................................................TAAAGTGCTTATAATGCAGGTAGA.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTGGT.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.........................................................TAGAGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0
........................................................CTAAAGTGCTTATAGTGCAGGTA............................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0
..............................TATCTGATACGACAGCTTCTGTAGCAC.................................................................................................................. 27 0 1 2.00 2 0 1 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTGA........................................................................................... 23 2 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATTGTGCAGGTA............................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0
.........................................................TAAAGTGCTTATAGTGC................................................................................................. 17 0 1 2.00 2 0 1 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAC......................................................................................... 25 2 1 2.00 2 1 1 0 0 0 0
..................................TGATACGACAGCTTCTGTAGCAC.................................................................................................................. 23 0 1 2.00 2 0 1 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAAG.......................................................................................... 24 2 1 2.00 2 0 1 0 0 0 1
.........................................................CAAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 2 2.00 4 1 3 0 0 0 0
.........................................................TAAGGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGATAGA.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
.........................................................TACAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 2.00 2 1 0 0 0 1 0
........................................................CTAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0
..........................................................GAAGTGCTTATAGTGCAGGTA............................................................................................ 21 1 1 2.00 2 0 0 2 0 0 0
.........................................................TAAAGTGCTTATAGCGCAGGTAGT.......................................................................................... 24 1 1 2.00 2 1 0 0 0 0 1
.........................................................TAATGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAGT........................................................................................ 26 1 1 2.00 2 0 2 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAA......................................................... 21 0 1 2.00 2 0 0 1 0 1 0
.........................................................TAAAGTGTTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0
.........................................................TACAGTGCTTATAGTGCAGGT............................................................................................. 21 1 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTG.................................................................................................. 16 0 1 2.00 2 2 0 0 0 0 0
.........................................................TAAAGTGCTCATAGTGCAGGTAGA.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTAA........................................................................................ 26 2 1 2.00 2 1 1 0 0 0 0
.........................................................TAGAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAGA....................................................... 23 1 1 2.00 2 1 1 0 0 0 0
..........................................................TAATTGCTTATAGTGCAGGTAGA.......................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0
.........................................................TAAAGTGCTTATGGTGCAGGTAT........................................................................................... 23 2 1 2.00 2 1 0 0 0 1 0
.............................................................................................ACTGCATTATGAGCACTTAAAGTA...................................................... 24 0 1 2.00 2 0 0 0 0 2 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTGTCCACT................................................................................... 31 3 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCATATAGTGCAGGTAG........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTACTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 2.00 2 0 2 0 0 0 0
..........................................................TAAGTGCTTATAGTGCAGGTAG........................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGTAGGTAT........................................................................................... 23 2 2 1.50 3 1 0 2 0 0 0
.........................................................TAAAGTGCTGTTCGTGCAGGTAGT.......................................................................................... 24 3 2 1.50 3 1 2 0 0 0 0
.........................................................TAAAGTGCTTATAGTTCAGGTAA........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAATGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGGGCAGGTAA........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCACGTAGT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...................................TATACGACAGCTTCTGTAGCAC.................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGAAA........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..........................................................AAAGTGCTTATAGCGCAGGTAG........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGAAGA.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................AAAAGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTGTCT...................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTACAGGTAGT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCCGGTAGT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAGGTGCTTATAGTGCAGG.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTACAGGT............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAACGTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTCT........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTCA........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.........................TGGTGTATCTGATACGACAGCTTCTGTAGCAC.................................................................................................................. 32 0 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATATTGCAGG.............................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGTTAG........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGAGT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
........................................................GTAAAGTGCTTATAGTGCAGGTA............................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAAGTAGA.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAA.......................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................ACTGCATTACGAGCACTTACAGT....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAATT....................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATCGTGCAGGT............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGTTA............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................AAAGTGCTTATGGTGCAGGTAGT.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................ACTGCTAGCTGTAGAACTCCAGCCTCGGCCT........................ 31 0 1 1.00 1 0 0 0 0 1 0
.........................................................TAAAGCGCTTATAGTGCAGGTA............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
.........................................................TTAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
........................................................CTAAAGTGCTTATAGTGCAGGT............................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0
..........................................................AAAGTGCTGTTCGTGCAGGTAGTG......................................................................................... 24 3 1 1.00 1 0 0 0 0 0 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGACA........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGTAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.............................................................GTGCTTATAGTGCAGGCAG........................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGGAGT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTG......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
......................................ACGACAGCTTCTGTAGCAC.................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.........................................................TATAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCCTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTCCTTATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCATATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
....................................................CGCGCTAAAGTGCTTATAGTGCAGGTA............................................................................................ 27 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGGTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGTAGGTAGA.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.....................................................GTAGTAAAGTGCTTATAGTGCAG............................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0
.........................................................TAAAGTGCTTATAGCGCAGGTAT........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.........................................................TAAATTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................TGTATCTGATACGACAGCTTCTGTAGCAC.................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0
.........................................................TAAAGTGCCTATAGTTCAGGTAG........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAAC.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGACT........................................................................................ 26 2 1 1.00 1 0 0 0 1 0 0
.........................................................TAAAGTGCTTAAAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATTGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTC............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATTGTGCAGGTAGTT......................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAGTAA..................................................... 25 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTCCTTATAGTGCAGGTAT........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................AAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................CTAAAGTGCTTATAGTGCAGGA............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGCGCAGGTA............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................TGAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...................................GCTACGACAGCTTCTGTAGCAC.................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAGAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.........................................................TACAGTGCTTATAGTGCAGGTAGG.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
....................................................................................................................ACTGCTAGCTGTAGAACTCCAGCCTCGGC.......................... 29 0 1 1.00 1 0 0 0 0 1 0
.........................................................TAAAGTGCTTTTAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................ACTGCTAGCTGTAGAACTCCAGCCTCGGCC......................... 30 0 1 1.00 1 0 0 0 0 1 0
.........................................................TAAAGTTCTTATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCCGGTAG........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................ACTGCATTATGAGCACTT............................................................ 18 0 1 1.00 1 0 0 1 0 0 0
.........................................................TAACGTGCTTATAGTGCAGGTAA........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGAAT........................................................................................ 25 2 1 1.00 1 0 1 0 0 0 0
...........................................................AAGTGCTTATAGTGCAGGTAT........................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGAA............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAG......................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAACTGCTTATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGAG........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..........................................................TAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..........................................................AAAGTGCTTATAGTGTAGGTAGT.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...................................GATACGCCAGCTTCTGTAGCAC.................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAGTAAGC................................................... 27 3 1 1.00 1 0 0 1 0 0 0
........................................................ATAAAGTGCTTATAGTGCAGGTAG........................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
.........................................................TATAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGAGCAGGTAG........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................AGTGCTTATAGTGCAGGTAGT.......................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................ACTGCATTACGAGCACTTCCAGTAC..................................................... 25 3 1 1.00 1 0 1 0 0 0 0
.........................................................CAAAGTGCTGATCGTGCAGGTAGT.......................................................................................... 24 3 2 1.00 2 1 1 0 0 0 0
..............................................................TGCTTATAGTGCAGGT............................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0
.........................................................CAAAGTGCTTATAGTGCAGGT............................................................................................. 21 1 2 1.00 2 0 1 1 0 0 0
.........................................................TGAAGTGCTTATAGTGCAGGTATT.......................................................................................... 24 2 1 1.00 1 0 0 0 0 0 1
.........................................................TAAAGTGCTTATAGTACAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAGAGTGCTTATAGTGCAGGTA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGTAGT.......................................................................................... 24 2 2 1.00 2 2 0 0 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGGTAGA.......................................................................................... 24 2 3 1.00 3 0 3 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGATAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................TACAGTGCTTATAGTGCAGGTA............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGA............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTTCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTCG........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAGG.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTTCAGGTAG........................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0
.........................................................TAAAGTGCTTCTAGTGCAGGTAT........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.........................................................TAAAGTGCTAATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTATG.......................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0
.............................................................GTGCTTATAGTGCAGGTA............................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
....................................ATACGACAGCTTCTGTAGCCC.................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTCCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAACGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAC........................................................................................ 26 3 1 1.00 1 0 0 0 1 0 0
.........................................................CAAAGTGCTTTTCGTGCAGGTAG........................................................................................... 23 3 6 0.83 5 3 0 2 0 0 0
...........................................................AAGTGCTGTTCGTGCAGGTAGT.......................................................................................... 22 3 7 0.57 4 0 4 0 0 0 0
.........................................................CAAAGTGCTTATAGTGCAGGTAT........................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
.........................................................TAAAATGCTTATAGTGCAGGTAGAA......................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGTAGTA......................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTATAA......................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0
.........................................................TAGAGTGCTTATAGTGCAGGTAT........................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
...........................................................TAGTGCTTATAGTGCAGGTA............................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0
.........................................................AAAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 2 0.50 1 0 1 0 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGGTAT........................................................................................... 23 2 4 0.50 2 1 0 0 0 1 0
.........................................................CAAAGTGCTGATCGTGCAGGTAG........................................................................................... 23 3 4 0.50 2 2 0 0 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGTTA........................................................................................ 25 2 2 0.50 1 0 0 1 0 0 0
.............................................................GTGCTTATAGTGCATGTAG........................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
.........................................................CAAAGTGCTGTTAGTGCAGGTAG........................................................................................... 23 3 5 0.40 2 2 0 0 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGGT............................................................................................. 21 1 3 0.33 1 0 0 1 0 0 0
.........................................................CAAAGTGCTGTTAGTGCAGGTAGT.......................................................................................... 24 3 3 0.33 1 1 0 0 0 0 0
.........................................................AAAAGTGCTTATAGTGCAGGTAT........................................................................................... 23 2 3 0.33 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGATTT.......................................................................................... 24 3 3 0.33 1 0 0 0 1 0 0
.............................................................GTGCTTATAGTGCAGGTAGTAA........................................................................................ 22 2 3 0.33 1 1 0 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGCAGT.......................................................................................... 24 3 3 0.33 1 0 1 0 0 0 0
.........................................................CAAAGTGCTTATAGCGCAGGTAGA.......................................................................................... 24 3 3 0.33 1 0 1 0 0 0 0
.........................................................TAAAGTGCTGATAGTGCAGA.............................................................................................. 20 2 13 0.31 4 3 1 0 0 0 0
.........................................................TAAAGTGCTTACAGTGCAGATA............................................................................................ 22 2 4 0.25 1 0 1 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGT............................................................................................. 21 2 8 0.25 2 2 0 0 0 0 0
.............................................................................................ACTTCATTATGAGCACTTAA.......................................................... 20 1 4 0.25 1 0 0 1 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGATAGTG......................................................................................... 25 3 4 0.25 1 0 1 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGCTA............................................................................................ 22 3 20 0.20 4 3 1 0 0 0 0
.........................................................TAAAGTGCTGACAGTGCAGGTAGA.......................................................................................... 24 3 6 0.17 1 1 0 0 0 0 0
.........................................................TAAAGTGCTGATAGTGCAGATAT........................................................................................... 23 3 6 0.17 1 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGAGT........................................................................................... 23 3 7 0.14 1 0 0 0 1 0 0

Anti-sense strand reads

AATAACACAGCTACATCTTAGACGGACCACATAGACTATGCTGTCGAAGACATCGTGATTTCACGAATATCACGTCCATCACAAATCAATAGATGACGTAATACTCGTGAATTTCATGACGATCGACATCTTGAGGTCGGAGCCGGACAGCGGGTCAGTTTGACAGGTCAA

****************************************(((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:23 AM