ID:

ssc-mir-204

 Coordinate:

chr1:250527017-250527125 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.4

Sense Strand Reads

TGGATTGTAGAAGTGAAGACAAACAGAGGAGCTCCTGACCGTGTACCCATGGCTACAGTCCTTCTCATGTGACTCGTGGACTTCCCTTTGTCATCCTATGCCTGAGAATATATGAAGGAGGCTGGGAAGGCAAAGGGACGTTCAATTGTCATCACTGGCATCTTTTTTGATCATTACACCATCATCCAATGCATCGGGGTAACCATGAC

******************************************************************..(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR139075

testes		 SRR1274764

testes		 SRR066809

ovary		 SRR066810

testes		 SRR139076

testes
.................................................................................TTCCCTTTGTCATCCTATGCCT.......................................................................................................... 22 0 1 1232.00 1232 632 87 295 145 64 9
........................................................................................................................GCTGGGAAGGCAAAGGGACGT.................................................................... 21 0 1 164.00 164 0 146 0 10 5 3
.................................................................................TTCCCTTTGTCATCCTATGCCTG......................................................................................................... 23 0 1 108.00 108 79 4 8 12 4 1
.................................................................................TTCCCTTTGTCATCCTATGCCTGT........................................................................................................ 24 1 1 53.00 53 18 7 6 17 4 1
........................................................................................................................GCTGGGAAGGCAAAGGGACG..................................................................... 20 0 1 30.00 30 1 27 0 1 1 0
.................................................................................TTCCCTTTGTCATCCTATGCC........................................................................................................... 21 0 1 29.00 29 14 3 5 3 3 1
.................................................................................TTCCCTTTGTCATCCTATGCCA.......................................................................................................... 22 1 1 19.00 19 11 3 1 2 1 1
.................................................................................TTCCCTTTGTCATCCTATGCCTT......................................................................................................... 23 1 2 13.00 26 6 10 1 6 3 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTT................................................................... 22 0 1 13.00 13 0 13 0 0 0 0
..................................................................................TCCCTTTGTCATCCTATGCCT.......................................................................................................... 21 0 1 10.00 10 2 4 2 1 1 0
.................................................................................TTCCCTTTGTCATCCTTTGCCT.......................................................................................................... 22 1 3 6.67 20 0 0 0 9 11 0
.................................................................................TTCCTTTTGTCATCCTATGCCT.......................................................................................................... 22 1 1 6.00 6 0 5 0 1 0 0
.................................................................................TTCCCTTTGTCATCCTATGC............................................................................................................ 20 0 1 6.00 6 0 3 0 1 0 2
.................................................................................TTCCCTTTGTCATCCTATGCCG.......................................................................................................... 22 1 1 6.00 6 3 0 3 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTA................................................................... 22 1 1 6.00 6 0 6 0 0 0 0
...............................................................CTCATGTGACTCGTGGAC................................................................................................................................ 18 0 1 5.00 5 0 5 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGAC...................................................................... 19 0 1 4.00 4 0 4 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTAT.................................................................. 23 2 1 4.00 4 0 4 0 0 0 0
....................................................................................CCTTTGTCATCCTATGCC........................................................................................................... 18 0 1 3.00 3 0 3 0 0 0 0
....................................................................................CCTTTGTCATCCTATGCCT.......................................................................................................... 19 0 1 3.00 3 0 1 0 2 0 0
.................................................................................TTCCCCTTGTCATCCTATGCCT.......................................................................................................... 22 1 1 3.00 3 0 1 0 1 1 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTTT.................................................................. 23 1 1 3.00 3 0 3 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTATGCCTA......................................................................................................... 23 1 1 3.00 3 0 0 0 3 0 0
.................................................................................TTCCCTTTGTCATCCTATG............................................................................................................. 19 0 1 3.00 3 2 0 0 1 0 0
.................................................................................TTCCCTTTGTCATCCTATGCCTTT........................................................................................................ 24 2 4 2.25 9 0 0 0 7 2 0
.................................................................................TTCCCTTTGTCATCCTATGCCTGA........................................................................................................ 24 0 1 2.00 2 1 0 0 1 0 0
..............................................................TCTCATGTGACTCGTGGAC................................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0
........................................................................................................................GCTGGGCAGGCAAAGGGACGT.................................................................... 21 1 1 2.00 2 0 2 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTAT.............................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGA....................................................................... 18 0 1 2.00 2 0 2 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTATGTCT.......................................................................................................... 22 1 1 2.00 2 0 1 0 1 0 0
.................................................................................TACCCTTTGTCATCCTATGCCT.......................................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0
...................................................................................CCCCTTGTCATCCTATGCCT.......................................................................................................... 20 1 1 2.00 2 0 2 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGG........................................................................ 17 0 6 1.17 7 0 7 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTACGCCT.......................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.................................................................................TTCCCTTTGTTATCCTATGCCTGT........................................................................................................ 24 2 1 1.00 1 0 0 0 1 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGCCG..................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAACGGACGTA................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTATGCCTGCA....................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0
.................................................................................TTCCCTTTGTCATCCTATCCCT.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTAA.................................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...................................................................................CCCTTTGTCATCCTATGCCT.......................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................TCTGGGAAGGCAAAGGGACG..................................................................... 20 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGTACGT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGTAAGGCAAAGGGACGT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCCTCCTATGCCT.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGA.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGTCGT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................CTCCCTTTGTCATCCTATGCCTG......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................GGCTGGGAAGGCAAAGGGACGT.................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................TACCCTTTGTCATCCTATGCCTGT........................................................................................................ 24 2 1 1.00 1 0 0 0 1 0 0
.................................................................................TTCCCTTTGTCATCCTATGCCTGC........................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0
.................................................................................TTCCCTTTGTCATCCCATGCCTG......................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
........................................................................................................................GATGGGAAGGCAAAGGGACGT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATTCTATGCCTG......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
....................................................................................CCTTTGTCATCCTATGCCTGG........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................TTCTCTTTGTCATCCTATGCCT.......................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
.................................................................................TTCCTTTTGTCATCCTATGCCTG......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................TCCCTTTGTCATCCTATGCCA.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGTCAAAGGGACGT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTCTGCCTGT........................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................................GCTGGGACGGCAAAGGGACGT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTATGCCTGTT....................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTTATCCTATGCCT.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTAAGCCT.......................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.................................................................................TTCCCTTTGTCATCCTATGCTT.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................CTTCCCTTTGTCATCCTATGCCT.......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.............................................................TTCTCATGTGACTCGTGGAC................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCTTATGCCT.......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTATGCCTC......................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTTA.................................................................. 23 1 1 1.00 1 0 0 0 0 1 0
..................................................................................TTCTTTTGTCATCCTATGCCT.......................................................................................................... 21 2 14 0.64 9 0 9 0 0 0 0
.................................................................................TTCCCTTTGTAATCCTATGCCT.......................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0
........................................................................................................................GCTGGGAAGGCCACGGGACGT.................................................................... 21 2 2 0.50 1 0 1 0 0 0 0
.................................................................................TTCCCTCTGTCATCCTATGCCTGT........................................................................................................ 24 2 2 0.50 1 0 0 0 1 0 0
.................................................................................TTCCCTTTGCCATCCTATGCCTT......................................................................................................... 23 2 2 0.50 1 0 0 0 0 1 0
...............................................................TTCATGTGACTCGTGGAC................................................................................................................................ 18 1 2 0.50 1 0 0 0 1 0 0
.................................................................................TTCCCTTTGTCATCCTATGCA........................................................................................................... 21 1 4 0.50 2 0 0 0 1 1 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGTCA.................................................................. 23 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGG......................................................................... 16 0 9 0.44 4 0 4 0 0 0 0
.................................................................................TTCCCTTTCTCATCCTATGCC........................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
.................................................................................TTCTCTTTGTCATCCTATG............................................................................................................. 19 1 3 0.33 1 0 1 0 0 0 0
..................................................................................TTCCTTTGTCATCCTATGCCT.......................................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
.................................................................................TTTCCTTTGTCATCCTATGCCT.......................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0
.................................................................................TTCCCTTTGTCATCCTTTGCCTT......................................................................................................... 23 2 7 0.29 2 0 0 0 2 0 0
.................................................................................TTCCCTTTGTCATCCTTTGCTT.......................................................................................................... 22 2 7 0.14 1 0 0 0 0 1 0
........................................................................................................................GCTGGGAAGGCAAAG.......................................................................... 15 0 20 0.10 2 0 2 0 0 0 0
.................................................................................TTCTCTTTTTCATCCTATGCCT.......................................................................................................... 22 2 11 0.09 1 0 1 0 0 0 0
........................................................................................................................GCTGGGAAGGCAAAGGGACGGAT.................................................................. 23 3 12 0.08 1 0 1 0 0 0 0
........................................................................................................................GCCGGGAAGGCAAAGGGACA..................................................................... 20 2 14 0.07 1 0 1 0 0 0 0
.................................................................................TTCCTTTTGTCATCCTAT.............................................................................................................. 18 1 15 0.07 1 0 1 0 0 0 0
....................................................................................GTTTTGTCATCCTATGCCT.......................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ACCTAACATCTTCACTTCTGTTTGTCTCCTCGAGGACTGGCACATGGGTACCGATGTCAGGAAGAGTACACTGAGCACCTGAAGGGAAACAGTAGGATACGGACTCTTATATACTTCCTCCGACCCTTCCGTTTCCCTGCAAGTTAACAGTAGTGACCGTAGAAAAAACTAGTAATGTGGTAGTAGGTTACGTAGCCCCATTGGTACTG

*****************************************************..(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:20 AM