ID:

ssc-mir-19a

 Coordinate:

chr11:66610343-66610424 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -39.3 -39.0

Sense Strand Reads

CCAATAATCCAAGCCAAGCAAGTATATAGGTGTTTTAATACTTTTTGTTTGCAGTCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGCTATTTCCTTCAAGTGATTTTTACTAATTTTCTGTACTTTTATTGTGTCGA

***********************************************...((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR139075

testes		 SRR139076

testes
..................................................................................................TGTGCAAATCTATGCAAAACTGA............................................................. 23 0 1 5243.00 5243 2719 2470 32 19 3 0
...............................................................................................ATTTGTGCAAATCCATGCAAAACTGA............................................................. 26 2 1 1134.00 1134 626 508 0 0 0 0
...............................................................................................ATTTGTGCAAATCTATGCAAAACTGA............................................................. 26 1 1 312.00 312 189 123 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTG.............................................................. 22 0 1 179.00 179 65 45 56 12 1 0
..................................................................................................TGTGCAAATCTATGCAAAACTGT............................................................. 23 1 1 44.00 44 16 14 6 6 2 0
.................................................................................................TTGTGCAAATCTATGCAAAACTGA............................................................. 24 0 1 26.00 26 13 11 2 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGAT............................................................ 24 0 1 16.00 16 9 5 2 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGC............................................................. 23 1 1 10.00 10 4 6 0 0 0 0
.................................................................................................ATGTGCAAATCTATGCAAAACTGA............................................................. 24 1 1 9.00 9 6 3 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAAC................................................................ 20 0 1 8.00 8 2 1 4 1 0 0
................................................................................................AGTGTGCAAATCTATGCAAAACTGA............................................................. 25 2 1 8.00 8 4 4 0 0 0 0
...............................................................AGTTTTGCATACTTGCACTAC.................................................................................................. 21 1 1 6.00 6 2 4 0 0 0 0
..................................................................................................TGTACAAATCTATGCAAAACTGA............................................................. 23 1 1 6.00 6 3 3 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACT............................................................... 21 0 1 6.00 6 2 1 2 0 1 0
...............................................................................................ATTTGTGCAAATCCATGCAAAACTG.............................................................. 25 2 1 5.00 5 3 2 0 0 0 0
..................................................................................................TGCGCAAATCTATGCAAAACTGA............................................................. 23 1 1 5.00 5 2 3 0 0 0 0
............................................TTGTTTGCAGTCCTCTGTT....................................................................................................................... 19 0 1 5.00 5 4 0 1 0 0 0
.................................................................................................TTGTGCAAATCTATGCAAAACTG.............................................................. 23 0 1 5.00 5 2 0 1 2 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGAA............................................................ 24 1 1 5.00 5 0 3 1 1 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGTT............................................................ 24 1 1 5.00 5 2 3 0 0 0 0
...................................................................................................GTGCAAATCTATGCAAAACTGA............................................................. 22 0 1 4.00 4 3 1 0 0 0 0
...............................................................AGTTTTGCATACTTGCACTA................................................................................................... 20 1 1 4.00 4 3 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAGAACTGA............................................................. 23 1 1 4.00 4 3 1 0 0 0 0
..............................................................................................ATTTTGTGCAAATCTATGCAAAACTGA............................................................. 27 3 1 4.00 4 2 2 0 0 0 0
..................................................................................................TGTGCAAATCTACGCAAAACTGA............................................................. 23 1 1 4.00 4 2 2 0 0 0 0
..................................................................................................TGTGCAAATCTGTGCAAAACTGA............................................................. 23 1 1 4.00 4 3 1 0 0 0 0
..................................................................................................TGTGCAAATTTATGCAAAACTGA............................................................. 23 1 3 3.33 10 1 9 0 0 0 0
..................................................................................................TGTGCAAATCTATGCGAAACTGA............................................................. 23 1 1 3.00 3 2 1 0 0 0 0
..................................................................................................TGTGCAAATCTATTCAAAACTGA............................................................. 23 1 1 3.00 3 1 2 0 0 0 0
..................................................................................................TGTGCAAGTCTATGCAAAACTGA............................................................. 23 1 1 3.00 3 1 2 0 0 0 0
...............................................................................................ATTTGTGCAAATCCACGCAAAACTGA............................................................. 26 3 1 3.00 3 2 1 0 0 0 0
...............................................................................................AGTTGTGCAAATCTATGCAAAACTGA............................................................. 26 0 1 3.00 3 0 3 0 0 0 0
................................................................................................ATTGTGCAAATCTATGCAAAACTGA............................................................. 25 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TGTGTAAATCTATGCAAAACTGA............................................................. 23 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................GTGCAAATCTATGCAAAACTGT............................................................. 22 1 1 2.00 2 0 0 0 0 2 0
....................................................................................AAGAAGAATGTAGTTGTGCAAAT........................................................................... 23 0 1 2.00 2 0 0 0 0 0 2
...............................................................................................AGTTGTGCAAATCCATGCAAAACTGA............................................................. 26 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTCCAAATCTATGCAAAACTGA............................................................. 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGCT............................................................ 24 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAA................................................................. 19 0 1 2.00 2 0 0 0 0 2 0
..................................................................................................TGTGCAAATCTATGCAAAACCGA............................................................. 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGTAAAACTGA............................................................. 23 1 1 2.00 2 1 1 0 0 0 0
................................................................................................ATTGTGCAAATCCATGCAAAACTGA............................................................. 25 2 3 2.00 6 2 4 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCAAAACTGT............................................................. 26 3 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTGCAAATCTATACAAAACTGA............................................................. 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTGGAAATCTATGCAAAACTGA............................................................. 23 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGAC............................................................ 24 1 2 1.50 3 3 0 0 0 0 0
.................................................................................................TTGTGCAAATCTATGCAAAACTGAT............................................................ 25 0 1 1.00 1 0 0 0 1 0 0
..................................................................................................TGTGCAACTCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGGGCAAATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TTGTGCAAATCCATGCAAAACTGA............................................................. 24 1 3 1.00 3 3 0 0 0 0 0
..................................................................................................TGCGCAAATCTATGCAAAACTGC............................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCAAAACAGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTTCAAATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATTTGAGCAAATCCATGCAAAACTGA............................................................. 26 3 1 1.00 1 0 1 0 0 0 0
....................................................................................AAGAAGAATGTAGTTGTGCAA............................................................................. 21 0 1 1.00 1 0 0 0 0 1 0
..................................................................................................TGTGCAAACCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................TAGTTTTGCATAGTTGCACTAC.................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0
...................................................................................................GTGCAAATCTATGCAAAACTG.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................TTTGCAAATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................GTGTGCAAATCTATGCAAAACTGA............................................................. 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................AGCTGTGCAAATCTATGCAAAACTGA............................................................. 26 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAGACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TTGCAAATCTATGCAAAACTGA............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAACCTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGTGCAAACCTATGCAAAACTG.............................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATTTGTCCAAATCTATGCAAAACTGA............................................................. 26 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTAGGCAAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAAACTATGCAAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTACAAATCTATGCAAAACTGA............................................................. 26 2 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................ACTTTTATTGTGTCGA 16 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCCAAACTGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTGCAAATCCAAGCAAAACTGA............................................................. 26 3 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGATT........................................................... 25 1 2 1.00 2 1 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGATC........................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTGCAAATCTATGCAATACTGA............................................................. 26 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTGCAAATCCCTGCAAAACTGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGCGCAAATCTATGCAAAAGTGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCGATGCAAAACTGA............................................................. 23 1 3 1.00 3 1 2 0 0 0 0
..................................................................................................TCTGCAAATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................CGTGCAAATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................AGTTTTGCATAGTTGCACTA................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1
..................................................................................................TGTGAAAATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................ATGTGCAAATCTATGCAAAACTG.............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTATCCAAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCAAAGCTGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCAATGCAAAACTGA............................................................. 23 1 3 1.00 3 3 0 0 0 0 0
...............................................................................................ATTTCTGCAAATCCATGCAAAACTGA............................................................. 26 3 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATTTGTGCAAATCTATGCAAAACTGAT............................................................ 27 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGG............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCGAAACTGA............................................................. 26 3 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCAAAATTGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTTA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATTCGTGCAAATCCATGCAAAACTGA............................................................. 26 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................GCTTGTGCAAATCTATGCAAAACTGA............................................................. 26 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTGTGCAAAACTG.............................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGATA........................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GGTTGTGCAAATCTATGCAAAACTGA............................................................. 26 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCCAAACTGA............................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTGCAAATCTATGTAAAACTG.............................................................. 22 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................CTGTGCAAATCTATGCAAAACTGA............................................................. 24 1 3 1.00 3 2 1 0 0 0 0
..................................................................................................TGTGCAGATCTATGCAAAACTGA............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAACCTG.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGTAGTTGTGCAAATCTATGCA.................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................AGTTTTGCATACTTGCACT.................................................................................................... 19 1 5 0.60 3 1 2 0 0 0 0
...............................................................................................ATTTGTGCAAATCCATGCAAAACGGA............................................................. 26 3 2 0.50 1 0 1 0 0 0 0
...............................................................................................ATTTGTGTAAATCCATGCAAAACTGA............................................................. 26 3 2 0.50 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGCAAAACTGTA............................................................ 24 2 2 0.50 1 0 0 0 1 0 0
................................................................................................TTTGTGCAAATCCATGCAAAACTGA............................................................. 25 2 4 0.50 2 2 0 0 0 0 0
..................................................................................................TGTGCAAATCCATGCAAAACTGATG........................................................... 25 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATTTATGCAAAACTG.............................................................. 22 1 3 0.33 1 0 0 0 0 1 0
.................................................................................................CTGTGCAAATCTATGCGAAACTGA............................................................. 24 2 3 0.33 1 0 1 0 0 0 0
...............................................................AGTTTTGCATACTTGCACTAT.................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0
...................................................................................................ATGCAAATCTATGCAAAACTG.............................................................. 21 1 5 0.20 1 0 1 0 0 0 0
.................................................................................................TGGTGCAAATCCATGCAAAACT............................................................... 22 2 5 0.20 1 0 0 0 0 1 0
..................................................................................................TGTGCAAATCTCTTCAAAACTG.............................................................. 22 2 6 0.17 1 0 0 0 0 1 0
..........................................................................................................TCTATGCAAAACTGA............................................................. 15 0 10 0.10 1 0 1 0 0 0 0
..................................................................................................TGTGCAAATCTATGC..................................................................... 15 0 10 0.10 1 0 1 0 0 0 0
...............................................................AGTTTTGCATACTTGCA...................................................................................................... 17 1 17 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

GGTTATTAGGTTCGGTTCGTTCATATATCCACAAAATTATGAAAAACAAACGTCAGGAGACAATCAAAACGTATCAACGTGATGTTCTTCTTACATCAACACGTTTAGATACGTTTTGACTACCACCGGACGATAAAGGAAGTTCACTAAAAATGATTAAAAGACATGAAAATAACACAGCT

**********************************************...((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:23 AM