ID:

ssc-mir-194b

 Coordinate:

chr10:11962863-11962940 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.0 -44.6 -44.6
mature

  1. ssc-mir-194b  chr10:11786916-11786938 -
  2. ssc-mir-194b  chr10:11962873-11962895 +
star

Sense Strand Reads

ATAGGCTTTCATCGAGACGAGCGGAAGGAGCCCTCTGATGGGCTTAATGGCGCCATCAGCTGTAACAGCGACTCCATGTGGACTGTGCCCCAATTTCCAGTGGAGATGCTGTTACCTTTGACGGCGACCAGCTCACTACCAAGATCCAAGAAGGACAATAAAAAAAATCATGGTCACT

***********************************...((((((....((((((.((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))).)))).))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274763

ovary
............................................................TGTAACAGCAACTCCATGTGGAC............................................................................................... 23 1 3 29.67 89 48 41 0 0
.........................................................ATATGTAACAGCAACTCCATGTGG................................................................................................. 24 3 4 4.75 19 18 1 0 0
............................................................TGTAACAGCGACTCCATGTGGAC............................................................................................... 23 0 2 3.50 7 3 4 0 0
............................................................TGTAACAGCGACTCCATGTGGACA.............................................................................................. 24 1 2 2.00 4 0 0 3 1
............................................................TGTAACAGCAACTCCATGTGGACA.............................................................................................. 24 2 4 1.75 7 4 3 0 0
............................................................TGTAACAGCAACTCCATGTGGACT.............................................................................................. 24 1 2 1.50 3 2 1 0 0
.........................................................ATATGTAACAGCAACTCCATGTGGA................................................................................................ 25 3 3 0.67 2 2 0 0 0
............................................................TGTAACAGCAACTCCATGTGGATT.............................................................................................. 24 2 3 0.67 2 1 1 0 0
............................................................TGTAACAGCGACTCCATGTGGA................................................................................................ 22 0 2 0.50 1 1 0 0 0
.........................................................ATTTGTAACAGCAACTCCATGTGG................................................................................................. 24 3 5 0.40 2 0 2 0 0
............................................................TGTAACAGCAACTCTATGTGGAC............................................................................................... 23 2 3 0.33 1 0 1 0 0
............................................................CGTAACAGCAACTCCATGTGGAC............................................................................................... 23 2 3 0.33 1 1 0 0 0
............................................................TGTAACAGCAACTCCCTGTGGAC............................................................................................... 23 2 3 0.33 1 1 0 0 0
............................................................TGTAACAGCAACTCCATGTGGAGT.............................................................................................. 24 2 3 0.33 1 1 0 0 0
............................................................TGTAACATCAACTCCATGTGGAC............................................................................................... 23 2 3 0.33 1 0 1 0 0
............................................................TGTAACAGCAATTCCATGTGGAC............................................................................................... 23 2 4 0.25 1 1 0 0 0
.........................................................AAATGTAACAGCAACTCCATGTGGA................................................................................................ 25 3 4 0.25 1 1 0 0 0
............................................................TGTAACAGCAACTCCATGTGGCC............................................................................................... 23 2 5 0.20 1 1 0 0 0

Anti-sense strand reads

TATCCGAAAGTAGCTCTGCTCGCCTTCCTCGGGAGACTACCCGAATTACCGCGGTAGTCGACATTGTCGCTGAGGTACACCTGACACGGGGTTAAAGGTCACCTCTACGACAATGGAAACTGCCGCTGGTCGAGTGATGGTTCTAGGTTCTTCCTGTTATTTTTTTTAGTACCAGTGA

***********************************...((((((....((((((.((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))).)))).))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:23 AM