ID:

ssc-mir-190b

 Coordinate:

chr4:104457810-104457892 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.6 -42.8 -42.8
mature

  1. ssc-mir-190b  chr4:104457820-104457841 +
  2. GL894998-2:17182-17203 -
star

Sense Strand Reads

TTTTCTCCGCAGTGGGGAGGAAGGCAGATGACGCCCAAAGCTCTCCTGCCTGCTTCTGTGTGATATGTTTGATATTGGGTTGTTTAATTAGGAACCAACTAAATGTCAAACATATTCTTACAGCAGTAGGCAATTCGGCATCATACGCTTTCCCACCTCAACCTCTGAGGCTCTGGGGCTCCT

***********************************....(((....((((((((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).))))))))....))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274764

testes		 SRR139076

testes		 SRR139075

testes
............................................................TGATATGTTTGATATTGGGTTG..................................................................................................... 22 0 2 512.00 1024 508 486 22 8 0
............................................................TGATATGTTTGATATTGGGTTGT.................................................................................................... 23 0 2 69.00 138 62 70 2 1 3
............................................................TGATATGTTTGATATTGGGTTGA.................................................................................................... 23 1 2 12.50 25 9 14 2 0 0
............................................................TGATATGTTTGATATTGGGTT...................................................................................................... 21 0 2 6.00 12 6 5 1 0 0
............................................................TGATATGTTTGATATTGGGTTA..................................................................................................... 22 1 2 3.50 7 4 3 0 0 0
............................................................TGATATGTTTGATATTGGGTTT..................................................................................................... 22 1 2 3.00 6 6 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGTT................................................................................................... 24 0 2 1.50 3 1 2 0 0 0
............................................................TGATATGTTTGATATTGGGTTGAA................................................................................................... 24 2 2 1.50 3 0 2 1 0 0
............................................................TGATATGTTTGATATTGGGT....................................................................................................... 20 0 2 1.50 3 0 3 0 0 0
............................................................TGATATGTTCGATATTGGGTTG..................................................................................................... 22 1 2 1.50 3 3 0 0 0 0
.............................................................GATATGTTTGATATTGGGTTG..................................................................................................... 21 0 2 1.00 2 0 1 0 1 0
............................................................TGATATGCTTGATATTGGGTTG..................................................................................................... 22 1 2 1.00 2 1 1 0 0 0
........................................................................................................................CAGCAGTAGGCAATTCGGCA........................................... 20 0 2 1.00 2 0 0 0 2 0
............................................................TGATATGTTTGATATTGGG........................................................................................................ 19 0 2 1.00 2 2 0 0 0 0
............................................................TGATATGTTTGATATTAGGTT...................................................................................................... 21 1 2 1.00 2 0 0 0 2 0
...........................................TCCTGCCTGCTTCTGTG........................................................................................................................... 17 0 4 0.75 3 0 1 2 0 0
............................................................TGATATGTTTGACATTGGGTTG..................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
............................................................TGATATGTTTGATATTGGGCTG..................................................................................................... 22 1 2 0.50 1 1 0 0 0 0
............................................................TGATATGTTTGATCTTGGGTTG..................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
............................................................TGATATGTATGATATTGGGTTG..................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
..........................................................GATGATATGTTTGATATTGGGTTG..................................................................................................... 24 2 2 0.50 1 0 1 0 0 0
........................................................................................................................CAGCAGTAGGCAATTCAGCA........................................... 20 1 2 0.50 1 0 0 0 1 0
...........................................................CTGATATGTTTGATATTGGGTTG..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
.............................................................GATATGTTTGATATTGGGTT...................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
........................................................................................................................CAGCAGTAGGCAATTCGGCAA.......................................... 21 1 2 0.50 1 0 0 0 1 0
............................................................TGATATGTTTGATACTGGGTTG..................................................................................................... 22 1 2 0.50 1 1 0 0 0 0
............................................................TGATATGTTTGATATCGGGTTG..................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
............................................................CGATATGTTTGATATTGGGTTGT.................................................................................................... 23 1 2 0.50 1 0 1 0 0 0
............................................................TGATGTGTTTGATATTGGGTTGT.................................................................................................... 23 1 2 0.50 1 0 1 0 0 0
............................................................TTATATGTTTGATATTGGGTTG..................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
............................................................TGATATGTTCGATATTGGGTTGT.................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGTA................................................................................................... 24 1 2 0.50 1 0 1 0 0 0
............................................................TGATATGTTTGATATTGGGTTGTTTAATT.............................................................................................. 29 0 2 0.50 1 0 0 0 1 0
............................................................TGATATGTTTGATCTTGGGT....................................................................................................... 20 1 2 0.50 1 0 0 0 1 0
............................................CCTGCCTGCTTCTGTG........................................................................................................................... 16 0 7 0.43 3 3 0 0 0 0
............................................................TGATATTTTTGATATTGGGTTG..................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
.............................................................GATATGTTTGATATTG.......................................................................................................... 16 0 3 0.33 1 0 0 0 1 0
.........................................TCTCCTGCCTGCTTCTGTG........................................................................................................................... 19 0 3 0.33 1 0 1 0 0 0
............................................................TGATATGTTTGATATTAGGT....................................................................................................... 20 1 3 0.33 1 1 0 0 0 0
............................................................TGATATGTTTGATGTTGGGTT...................................................................................................... 21 1 4 0.25 1 0 1 0 0 0
............................................................TGATATGTTTGATATTGGGA....................................................................................................... 20 1 5 0.20 1 0 1 0 0 0
..............................................................TGATGTTTGATATTGGGTTG..................................................................................................... 20 2 20 0.10 2 2 0 0 0 0

Anti-sense strand reads

AAAAGAGGCGTCACCCCTCCTTCCGTCTACTGCGGGTTTCGAGAGGACGGACGAAGACACACTATACAAACTATAACCCAACAAATTAATCCTTGGTTGATTTACAGTTTGTATAAGAATGTCGTCATCCGTTAAGCCGTAGTATGCGAAAGGGTGGAGTTGGAGACTCCGAGACCCCGAGGA

***********************************....(((....((((((((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).))))))))....))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274764

testes
.........................................................TACACTATACAAACTATAACCC........................................................................................................ 22 1 2 0.50 1 1

Generated: 09/01/2015 at 11:36 AM