ID:

ssc-mir-190a

 Coordinate:

chr1:120448012-120448093 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.6 -30.3 -30.3

Sense Strand Reads

GCAATGCTGTGCCCGTTCTCAGCTCAGTCAGACCTGGATGCCTTTCTGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCTTGCCCTGTCTCCGGGGGTTCCTAATATAGTTCATAAGGCAACAGGAAAAGTCTAT

*********************************************..(((((...(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))...)))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary		 SRR139075

testes		 SRR1274764

testes		 SRR139076

testes
............................................................TGATATGTTTGATATATTAGGTTG.................................................................................................. 24 0 1 347.00 347 176 138 28 1 4 0
............................................................TGATATGTTTGATATATTAGG..................................................................................................... 21 0 1 270.00 270 166 101 1 1 0 1
............................................................TGATATGTTTGATATATTAGGTT................................................................................................... 23 0 1 188.00 188 96 51 29 4 6 2
............................................................TGATATGTTTGATATATTAGGT.................................................................................................... 22 0 1 168.00 168 95 47 15 8 3 0
............................................................TGATATGTTTGATATATTAGGTA................................................................................................... 23 1 1 57.00 57 44 12 1 0 0 0
............................................................TGATATGTTTGATATATTAGGTTGT................................................................................................. 25 0 1 48.00 48 26 19 3 0 0 0
............................................................TGATATGTTTGATATATTAGGTTA.................................................................................................. 24 1 1 30.00 30 17 11 2 0 0 0
............................................................TGATATGTTTGATATATTAGGA.................................................................................................... 22 1 1 21.00 21 20 1 0 0 0 0
............................................................TGATATGTTTGATATATTAGA..................................................................................................... 21 1 1 16.00 16 11 5 0 0 0 0
...........................................................CTGATATGTTTGATATATTAGGT.................................................................................................... 23 1 1 13.00 13 8 5 0 0 0 0
..........................................TTTCTGCAGGCCTCTGTG.......................................................................................................................... 18 0 1 9.00 9 5 4 0 0 0 0
................................................................................................ACTATATATCAAACATATTCCT................................................................ 22 0 1 8.00 8 1 0 1 6 0 0
............................................................TGATATGTTTGATATATTAGGTG................................................................................................... 23 1 1 6.00 6 3 1 2 0 0 0
............................................................TGATATGTTTGATATATTAGGTTT.................................................................................................. 24 1 1 6.00 6 2 2 1 1 0 0
...........................................................CTGATATGTTTGATATATTAGGTT................................................................................................... 24 1 1 5.00 5 4 1 0 0 0 0
............................................................TGATATGTTTGATATATTAGGTTGA................................................................................................. 25 1 1 4.00 4 3 0 1 0 0 0
...........................................................CTGATATGTTTGATATATTAGGTA................................................................................................... 24 2 1 3.00 3 1 2 0 0 0 0
.........................................TTTTCTGCAGGCCTCTGTG.......................................................................................................................... 19 1 4 2.50 10 4 6 0 0 0 0
.................................................................................................CTATATATCAAACATATTCCTA............................................................... 22 0 1 2.00 2 0 0 1 0 0 1
............................................................TGAGATGTTTGATATATTAGG..................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0
.......................................................................................................................CAGTGTCTTGCCCTTTCTCC........................................... 20 1 1 2.00 2 1 1 0 0 0 0
.............................................................GATATGTTTGATATATTAGGTT................................................................................................... 22 0 1 2.00 2 1 0 0 0 0 1
................................................................................................ACTATATATCAAGCATATTCCT................................................................ 22 1 1 2.00 2 0 2 0 0 0 0
............................................................TGATATGTTTGATATATTA....................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................................................CAGTGTCTTGCCCTTTCTCCG.......................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................CTGATATGTTTGATATATTAGGA.................................................................................................... 23 2 2 1.50 3 2 1 0 0 0 0
............................................................TGATATGTTTGATATATTAGGCT................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATATCAGG..................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
............................................................TGATATGTTTGTTATATTAGGTTG.................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
............................................................TGATATGTTTGATATATTAG...................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATATTAGGCTA.................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.............................................................GATATGTTTGATATATTAGGTTG.................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1
............................................................TTATATGTTTGATATATTAGGTT................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATAAGTTTGATATATTAGG..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTCTGATATATTAGGTT................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTATATATCAAGCATATTCCTA............................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATATTAGGAT................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................................................TGATATGTTTGATATATTAGGTTGTT................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTAATATATTAGGTTG.................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................TGTTTGATATATTAGGTT................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
............................................................TGATATGATTGATATATTAGGTA................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................GGATATGTTTGATATATTAGGT.................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................TGATATGCTTGATATATTAGGTT................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
................................................................................................ACTATATATCAAGCATATTCCTAT.............................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.....................................ATGCCTTTCTGCAGGCCTCTGTG.......................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
............................................................TGATATGTTTGATATATTAGGTTGGT................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTATATATCAAACATATTCC................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
............................................................TGGTATGTTTGATATATTAGG..................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................TGAGATGTTTGATATATTAGGT.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATAATAGGTA................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.........................................CTTTCTGCAGGCCTCTGTG.......................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
............................................................TGATATGTTTGATATATTAGGTAG.................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATATTAGGTAT.................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0
............................................................CGATATGTTTGATATATTAGGTTT.................................................................................................. 24 2 2 0.50 1 0 1 0 0 0 0
............................................................TGATATGTTTGATATATTAGGTGA.................................................................................................. 24 2 2 0.50 1 0 0 0 0 0 1
............................................................TGATATGTTTGATATATTAGGAA................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
...........................................................CTGATATGTTTGATATATTAGGCA................................................................................................... 24 3 4 0.25 1 0 1 0 0 0 0
........................................CTTTTCTGCAGGCCTCTGTG.......................................................................................................................... 20 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................CTATATATCAAACATATTCTT................................................................ 21 1 4 0.25 1 0 0 0 1 0 0
..........................................TTCCTGCAGGCCTCTGTG.......................................................................................................................... 18 1 17 0.06 1 1 0 0 0 0 0

Anti-sense strand reads

CGTTACGACACGGGCAAGAGTCGAGTCAGTCTGGACCTACGGAAAGACGTCCGGAGACACACTATACAAACTATATAATCCAACAATAAATTAGGTTGATATATAGTTTGTATAAGGATGTCACAGAACGGGACAGAGGCCCCCAAGGATTATATCAAGTATTCCGTTGTCCTTTTCAGATA

*************************************************..(((((...(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))...)))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:18 AM