ID:

ssc-mir-18b

Coordinate:

chrX:126200019-126200101 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-28.5	-28.5	-28.4

mature

star

Sense Strand Reads

TTTGTGCATAATTAAGCTGTTGGTGCTTTTGAGCTCTTCCTCATAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCAGTTAGTGAAGCAGCTTAGAATCTACTGCCCTAAATGCCCCTTCTGGCACAGGCTGCCTAATACACAGCATGGAAAAATATGCCTTGATTAGTCGCTTGCATAGGA *********************************...........(((((..((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..))))))))).........)))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR066809 ovary	SRR066810 testes	SRR139075 testes	SRR1274763 ovary	SRR139076 testes
............................................................TAAGGTGCATCTAGTGCA.........................................................................................................	18	0	2	6.50	13	8	5	0	0	0
............................................................TAAGGTGCATCTAGTGCAGT.......................................................................................................	20	0	1	6.00	6	3	2	0	1	0
............................................................TAAGGTGCATCTAGTGCAG........................................................................................................	19	0	2	2.00	4	1	1	2	0	0
............................................................TAAGGTGCATCTAGTGC..........................................................................................................	17	0	2	2.00	4	3	0	1	0	0
............................................................TAAGGTGCATCTAGTGCAGTT......................................................................................................	21	0	1	2.00	2	0	0	2	0	0
............................................................TAAGGTGCATCTAGTGCAGTTAG....................................................................................................	23	0	1	1.00	1	0	1	0	0	0
............................................................TAAGGTGCATCTAGTGTAGTTAG....................................................................................................	23	1	1	1.00	1	0	0	0	0	1
.....................................................................................................ACTGCCCTAAATGCTCCTTCTT............................................................	22	2	2	0.50	1	1	0	0	0	0
............................................................TAAGGTGCATCTAGTGCAGGT......................................................................................................	21	1	2	0.50	1	0	0	1	0	0
.........................................................GATTAAGGTGCATCTAGTGCA.........................................................................................................	21	2	3	0.33	1	0	0	1	0	0
............................................................TAAGGTGCATCTAGTG...........................................................................................................	16	0	3	0.33	1	0	1	0	0	0
............................................................TAAGGGGCATCTAGTGC..........................................................................................................	17	1	5	0.20	1	0	0	1	0	0
............................................................TAAGGTGCATCTAGTGAAA........................................................................................................	19	2	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

AAACACGTATTAATTCGACAACCACGAAAACTCGAGAAGGAGTATTACACAGAGAACACAATTCCACGTAGATCACGTCAATCACTTCGTCGAATCTTAGATGACGGGATTTACGGGGAAGACCGTGTCCGACGGATTATGTGTCGTACCTTTTTATACGGAACTAATCAGCGAACGTATCCT *********************************...........(((((..((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..))))))))).........)))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 09/01/2015 at 11:45 AM