ID:

ssc-mir-187

 Coordinate:

chr6:112191797-112191874 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.5 -41.4

Sense Strand Reads

AAGAGGAAGCCGGGCAGGTGTTGGCAGGCCAGGCTCACCATGACACCGTGTGAGACCTCGGGCTACAACACGGGACTCGGGCGCTGCTCTGACCCCTCGTGTCTTGTGTTGCAGCCGGAGGGACGCAGGTCTGCAGCAGAGCCTGCTCCCTGCCCGGGACTCGGACTCGACATGGAAG

*********************************************((.((((...((((.((((.(((((((((((.((((..............)))).))))))))))).)))).))))..))))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR1274763

ovary		 SRR1274764

testes
................................................................................................TCGTGTCTTGTGTTGCAGCCGGT........................................................... 23 1 1 30.00 30 15 13 2 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGG............................................................ 22 0 1 15.00 15 2 8 2 3 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGGT........................................................... 22 1 1 12.00 12 11 1 0 0 0
......................................................................................................................................................TGTCCGGGACTCGGAGTCGACG...... 22 3 1 9.00 9 5 0 4 0 0
.....................................................................................................................................................CTGTCCGGGACTCGGAGTCGACG...... 23 3 1 7.00 7 2 0 5 0 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGGTT.......................................................... 23 2 1 6.00 6 4 0 1 1 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGGTA.......................................................... 23 2 1 5.00 5 5 0 0 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGGTA.......................................................... 24 2 1 5.00 5 3 2 0 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGGA........................................................... 23 0 1 4.00 4 3 1 0 0 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGGTAT......................................................... 24 3 1 4.00 4 2 2 0 0 0
.........................................................................................................................................................CCGGGACTCGGAGTCGACG...... 19 2 6 3.67 22 10 0 12 0 0
..........................................................................................................................................................CGGGACTCGGAGTCGACGTGGT.. 22 3 1 3.00 3 1 0 2 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGGTT.......................................................... 24 2 1 3.00 3 0 3 0 0 0
...............................................................................................CTCGTGTCTTGTGTTGCAGCCGT............................................................ 23 1 1 3.00 3 1 0 0 2 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGGA........................................................... 22 0 1 2.00 2 0 0 2 0 0
.........................................................................................................................................................CCGGGACTCGGAGTCGAC....... 18 1 1 2.00 2 1 0 1 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGA............................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................................................................................................................TCACTGTCCGGGACTCGGA............. 19 2 10 1.60 16 7 0 9 0 0
.....................................................................................................................................................CTGTCCGGGACTCGGA............. 16 1 19 1.11 21 14 0 7 0 0
.................................................................................................CGCGTCTTGTGTTGCAGCCGGTA.......................................................... 23 3 1 1.00 1 1 0 0 0 0
......................................................................................................................................................TGTCCGGGACTCGGAGTCGAC....... 21 2 1 1.00 1 1 0 0 0 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGG............................................................ 21 0 1 1.00 1 1 0 0 0 0
............................................................GGCTACAACACGGGACTCGG.................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGGAA.......................................................... 24 1 1 1.00 1 1 0 0 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGC............................................................ 22 1 1 1.00 1 0 0 1 0 0
.................................................................................................CGTGTCTTGTGTTGCAGCCGGATT......................................................... 24 2 1 1.00 1 1 0 0 0 0
................................................................................................TCGTGTCTTGTGTTGCAGC............................................................... 19 0 1 1.00 1 0 0 1 0 0
................................................................................................TCGTGTCTTGTGTTGCAGCCGGTAT......................................................... 25 3 1 1.00 1 0 0 1 0 0
...............................................................................................CTCGTGTCTTGTGTTGCAGCC.............................................................. 21 0 1 1.00 1 0 0 0 0 1
................................................................................................TCGTGTCTTGTGTTGCAGCCGT............................................................ 22 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................CTGTCCGGGACTCGGAGTCGACGTG.... 25 3 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................CCGGGACTCGGAGTCGACGT..... 20 2 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................CCGGGACTCGGATTCGACG...... 19 2 4 0.75 3 1 0 2 0 0
.......................................................................................................................................................GTCCGGGACTCGGAGTCGACG...... 21 3 4 0.75 3 3 0 0 0 0
.........................................................................................................................................................CCGGGACTCGGAGTCGA........ 17 1 3 0.67 2 0 0 2 0 0
..........................................................................................................................................................CGGGACTCGGAGTCGACGT..... 19 2 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................CGGGACTCGGAGTCGAC....... 17 1 2 0.50 1 0 0 1 0 0
...................................................................................................TGTCTTGTGTTGCAGCCGGTA.......................................................... 21 2 3 0.33 1 1 0 0 0 0
........................................................................................................................................................TCCGGGACTCGGAGTCGACGT..... 21 3 4 0.25 1 1 0 0 0 0
........................................................................................................................................................TCCGGGACTCGGAGTCGACG...... 20 3 14 0.21 3 1 0 2 0 0
..........................................................................................................................................................CGGGACTCGGAGTCGACG...... 18 2 10 0.20 2 2 0 0 0 0
............................................................................................................................................................GGACTCGGAGTCGACGTGGT.. 20 3 17 0.12 2 1 0 1 0 0
.....................................................................................................................................................CTGTCCGGGACTCGGAGTC.......... 19 2 10 0.10 1 1 0 0 0 0
..........................................................................................................................................GAGCCTGATACCTGCCCGG..................... 19 2 12 0.08 1 0 0 1 0 0
......................................................................................................................................................TGTCCGGGACTCGGAGTCGGC....... 21 3 14 0.07 1 1 0 0 0 0
...................................................................................................................................................CACTGTCCGGGACTCGGAGTC.......... 21 3 18 0.06 1 1 0 0 0 0
.............................................................................................................................................................GACTCGGAGTCGACGTGGT.. 19 3 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................GACTCGGAGTCGACGTG.... 17 2 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TTCTCCTTCGGCCCGTCCACAACCGTCCGGTCCGAGTGGTACTGTGGCACACTCTGGAGCCCGATGTTGTGCCCTGAGCCCGCGACGAGACTGGGGAGCACAGAACACAACGTCGGCCTCCCTGCGTCCAGACGTCGTCTCGGACGAGGGACGGGCCCTGAGCCTGAGCTGTACCTTC

*********************************************((.((((...((((.((((.(((((((((((.((((..............)))).))))))))))).)))).))))..))))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:39 AM