ID:

ssc-mir-184

 Coordinate:

chr7:53883626-53883708 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.6 -37.2 -37.1
mature

  1. ssc-mir-184  chr7:53883677-53883698 +
  2. GL894254-2:214213-214234 -
star

  1. ssc-mir-184  chr7:53883638-53883659 +
  2. GL894254-2:214252-214273 -

Sense Strand Reads

TCGGTTTTCCTCACAAAGCTTCATCAAAACGTCGCCGCTGCCACCACAGGCCAGTCACATCCCCTTATCACTTTTCCAGCCAGCTTTGTGACTCTAAATGTTGGACGGAGAACTGATAAGGGTAGGTGATTGACACTCACAGCCTCTGGAAGCCCCGAGGGTCACCTGTAGGTGTGTGTGGGG

***********************************************....(((((((...(((((((((.((((((..(((((((((......)))).)))))..)))))).)))))))))...)))))))......********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary		 SRR139075

testes		 SRR139076

testes		 SRR1274764

testes
.....................................................................................................TGGACGGAGAACTGATAAGGGT............................................................ 22 0 2 466.50 933 553 262 63 36 6 13
.....................................................................................................TGGACGGAGAACTGATAAGGG............................................................. 21 0 2 317.00 634 359 265 3 4 1 2
.....................................................................................................TGGACGGAGAACTGATAAGG.............................................................. 20 0 2 290.50 581 338 242 1 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTT........................................................... 23 1 2 127.50 255 147 95 7 2 2 2
.....................................................................................................TGGACGGAGAACTGATAAGGGA............................................................ 22 1 2 65.00 130 74 52 2 2 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTA........................................................... 23 0 2 41.00 82 38 37 3 1 3 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTTT.......................................................... 24 2 2 39.00 78 47 27 1 1 1 1
.....................................................................................................TGGACGGAGAACTGATAAG............................................................... 19 0 2 29.00 58 42 15 0 1 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTAT.......................................................... 24 1 2 25.00 50 22 15 3 2 8 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTAA.......................................................... 24 1 2 12.50 25 6 14 0 1 3 1
.....................................................................................................TGGACGGAGAACTGATAAGGGC............................................................ 22 1 2 12.00 24 15 7 1 1 0 0
.....................................................................................................TGGACGGAGAATTGATAAGGGC............................................................ 22 2 2 12.00 24 16 8 0 0 0 0
....................................................................................................TTGGACGGAGAACTGATAAGGGT............................................................ 23 0 2 11.00 22 10 8 2 0 0 2
.....................................................................................................TGGACGGAGAATTGATAAGG.............................................................. 20 1 2 7.50 15 8 7 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGA............................................................. 21 1 2 6.50 13 9 4 0 0 0 0
.....................................................................................................TGGACGGAGAATTGATAAGGG............................................................. 21 1 2 6.00 12 6 6 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGAA........................................................... 23 1 2 4.50 9 3 5 0 0 1 0
....................................................................................................TTGGACGGAGAACTGATAAGGG............................................................. 22 0 2 4.50 9 5 4 0 0 0 0
......................................................................................................GGACGGAGAACTGATAAGGGT............................................................ 21 0 2 4.50 9 6 3 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTTAT......................................................... 25 3 2 4.00 8 4 1 0 0 1 2
.....................................................................................................TGGACGGAGAACTGATAAGGGTTTT......................................................... 25 3 2 3.50 7 4 1 1 0 1 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTTA.......................................................... 24 2 2 3.00 6 3 2 1 0 0 0
......................................................................................................GGACGGAGAACTGATAAGG.............................................................. 19 0 2 2.50 5 3 2 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGCT........................................................... 23 2 2 2.50 5 3 2 0 0 0 0
......................................................................................................GGACGGAGAACTGATAAGGG............................................................. 20 0 2 2.00 4 1 3 0 0 0 0
....................................................................................................TTGGACGGAGAACTGATAAGG.............................................................. 21 0 2 2.00 4 1 3 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGAAA.......................................................... 24 2 2 1.50 3 2 1 0 0 0 0
.....................................................................................................TGTACGGAGAACTGATAAGGG............................................................. 21 1 2 1.50 3 3 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGT............................................................. 21 1 2 1.50 3 0 2 1 0 0 0
.....................................................................................................TGGACGGAGAATTGATAAG............................................................... 19 1 2 1.00 2 0 2 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGTTT............................................................ 22 2 2 1.00 2 0 2 0 0 0 0
......................................................................................................GGACGGAGAACTGATAAGGGTT........................................................... 22 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TGGATGGAGAACTGATAAGGGT............................................................ 22 1 2 1.00 2 1 0 1 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTTTTT........................................................ 26 3 2 1.00 2 0 1 0 0 0 1
.....................................................................................................TGGACGGAGAACTGATAAGGGG............................................................ 22 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTTTA......................................................... 25 3 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGACAAGGGT............................................................ 22 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAAG.............................................................. 20 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTAAT......................................................... 25 2 2 1.00 2 0 2 0 0 0 0
......................................................................................................GGACGGAGAACTGATAAGGGC............................................................ 21 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGACGGGGAACTGATAAGGGT............................................................ 22 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................TGGACGGTGAACTGATAAGGGT............................................................ 22 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGACGGAGAACCGATAAGGGT............................................................ 22 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGACGGAGAACCGATAAGG.............................................................. 20 1 2 1.00 2 1 1 0 0 0 0
.......................................................................................................GACGGAGAACTGATAAGGGTAG.......................................................... 22 0 2 1.00 2 0 0 0 1 0 1
.....................................................................................................TGGACGGAGGACTGATAAGGGT............................................................ 22 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTAG.......................................................... 24 0 2 1.00 2 1 0 0 1 0 0
.....................................................................................................TGGACGGAGAACTGATAAGA.............................................................. 20 1 2 1.00 2 1 1 0 0 0 0
.....................................................................................................TGGATGGAGAACTGATAAGGGTT........................................................... 23 2 3 0.67 2 1 1 0 0 0 0
.....................................................................................................GGGACGGAGAACTGATAAGGG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGGCGGAGAACTGATAAGGG............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGAAG.......................................................... 24 1 2 0.50 1 0 0 1 0 0 0
..............................................................CCTTATCACTTTTCCAGCCAGC................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATATGG.............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................GGACGGAGAACTGATAAGGGTTT.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................CGCTGGACGGAGAACTGATAAGG.............................................................. 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGTACGGAGAACTGATAAGGGTAT.......................................................... 24 2 2 0.50 1 0 0 0 1 0 0
.....................................................................................................TGGACGGACAACTGATAAGGG............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGAT........................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGTGAACTGATAAGGG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGAAA........................................................... 23 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGGTAAGG.............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................ATTTGGACGGAGAACTGATAAGGGT............................................................ 25 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGGTAAGGGT............................................................ 22 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGCACTGATAAGGGTT........................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGATGGAGAACTGATAAGGG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGAA............................................................ 22 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGAGT............................................................ 22 1 2 0.50 1 0 1 0 0 0 0
......................................................................................................GGACGGAGAACTGATAAG............................................................... 18 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGTCGGAGAACTGATAAGGGTAA.......................................................... 24 2 2 0.50 1 0 1 0 0 0 0
.........................................................................................................CGGAGAACTGATAAGGGT............................................................ 18 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGGGAACTGATAAGGGTAT.......................................................... 24 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGAAAAGGG............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGACAACTGATAAGGGA............................................................ 22 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTAATAAGGGT............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGGTAAGGGTA........................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTGT.......................................................... 24 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTATT......................................................... 25 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAGCTGATAAGGG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TTGGACGGAGAACTGATAAGGGTAT.......................................................... 25 1 2 0.50 1 0 0 0 0 1 0
......................................................................................................GGACGGAGAACTGATAAGGGA............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TTGGACGGAGAACTGATAAGGTAA........................................................... 24 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTC........................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................AGGACGGAGAACTGATAAGGGT............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAA................................................................ 18 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAAAACTGATAAGGGTAA.......................................................... 24 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACCGATAAGGG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTTAA......................................................... 25 3 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGCA........................................................... 23 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................TGGACGGAGAACTGATAGGGGT............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGCGAACTGATAAGGGT............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAAGGG............................................................ 22 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGC.............................................................. 20 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAATG.............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGTT............................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACCGATAAGGGTT........................................................... 23 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACGGCGAACTGATAAGG.............................................................. 20 1 2 0.50 1 0 1 0 0 0 0
.........................................................................................................CGGAGAACTGATAAGGGTAG.......................................................... 20 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGGGTAAA......................................................... 25 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................CTGGACGGAGAACTGATAAGG.............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAGCTGATAAGG.............................................................. 20 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAAGG............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TAGACGGAGAACTGATAAGGG............................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGGTAAGGG............................................................. 21 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TGGACAGAGAACTGATAAGGGTAA.......................................................... 24 2 3 0.33 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGAACTGATAAGTT............................................................. 21 2 3 0.33 1 0 1 0 0 0 0
.....................................................................................................TGGATGGAGAACTGATAAGG.............................................................. 20 1 3 0.33 1 1 0 0 0 0 0
.....................................................................................................TGGACGGAGATCTGGTAAGGGC............................................................ 22 3 4 0.25 1 0 1 0 0 0 0
.....................................................................................................TGGACGGAGAATTGATAAGGGCT........................................................... 23 3 7 0.14 1 1 0 0 0 0 0
..............................................................................GGCGGCTTTGTGACTCTAGA..................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AGCCAAAAGGAGTGTTTCGAAGTAGTTTTGCAGCGGCGACGGTGGTGTCCGGTCAGTGTAGGGGAATAGTGAAAAGGTCGGTCGAAACACTGAGATTTACAACCTGCCTCTTGACTATTCCCATCCACTAACTGTGAGTGTCGGAGACCTTCGGGGCTCCCAGTGGACATCCACACACACCCC

*********************************************....(((((((...(((((((((.((((((..(((((((((......)))).)))))..)))))).)))))))))...)))))))......*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:41 AM