ID:

ssc-mir-1839

 Coordinate:

chr7:57683204-57683283 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.9 -18.8 -18.6

Sense Strand Reads

AGACTAAGAAAACAGAGTCCTTGAAGTCAAGCCGATTCTGCTTTTAGCCTCCTAAATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAGATGAATTCAAGACCTACTTTTCTACCAACAGCAATTACACACTTTCCATTGTCTTCTGTAGAAAGTAGCAGTAGTACATTTACAGATGAG

*********************************************.................((((((.(((..((((((((....((...))....))))))))..)))))))))...................********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274764

testes
............................................................AAGGTAGATAGAACAGGTCTTGT................................................................................................. 23 0 1 6408.00 6408 3271 3088 39 7 3
.............................................................AGGTAGATAGAACAGGTCTTGT................................................................................................. 22 0 1 585.00 585 299 250 15 20 1
............................................................AAGGTAGATAGAACAGGTCTTG.................................................................................................. 22 0 1 520.00 520 163 193 132 28 4
.............................................................AGGTAGATAGAACAGGTCTTG.................................................................................................. 21 0 1 114.00 114 21 13 59 21 0
............................................................AAGGTAGATAGAACAGGTCTTGA................................................................................................. 23 1 1 101.00 101 22 20 47 12 0
.............................................................AGGTAGATAGAACAGGTCTTGTT................................................................................................ 23 0 1 87.00 87 38 40 5 3 1
............................................................AAGGTAGATAGAACAGGTCTT................................................................................................... 21 0 1 68.00 68 29 32 5 2 0
...................................................................................................AGACCTACTTATCTACCAACAGC.......................................................... 23 1 1 28.00 28 11 17 0 0 0
............................................................AAGGTAGATAGAACAGGTCT.................................................................................................... 20 0 1 26.00 26 13 11 2 0 0
..................................................................................................AAGACCTACTTATCTACCAACA............................................................ 22 1 1 24.00 24 15 9 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTT................................................................................................ 24 0 1 21.00 21 12 9 0 0 0
............................................................AAGGTAGATAGAACAGGCCTTGT................................................................................................. 23 1 1 19.00 19 8 10 1 0 0
.............................................................AGGTAGATAGAACAGGTCTTGA................................................................................................. 22 1 2 14.50 29 2 4 20 3 0
...................................................................................................AGACCTACTTATCTACCAACAG........................................................... 22 1 1 14.00 14 7 7 0 0 0
...........................................................AAAGGTAGATAGAACAGGTCTTGT................................................................................................. 24 0 1 14.00 14 9 5 0 0 0
...................................................................................................AGACCTACTTATCTACCAACA............................................................ 21 1 2 14.00 28 12 16 0 0 0
.............................................................AGGTAGATAGAACAGGTCTT................................................................................................... 20 0 1 10.00 10 1 3 6 0 0
...................................................................................................AGACCTACTTATCTACCAACAGT.......................................................... 23 2 1 10.00 10 3 7 0 0 0
............................................................AAGGTAGATAGAACAGGTTTTGT................................................................................................. 23 1 1 9.00 9 2 5 2 0 0
............................................................AAGGTAGATAGAACAGGGCTTGT................................................................................................. 23 1 1 8.00 8 4 4 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTTT............................................................................................... 24 0 1 7.00 7 3 4 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTT.................................................................................................. 22 1 1 7.00 7 1 5 0 1 0
............................................................AAGGTAGATAGAACAGGTC..................................................................................................... 19 0 1 7.00 7 3 2 2 0 0
...........................................................AAAGGTAGATAGAACAGGTCTTG.................................................................................................. 23 0 1 6.00 6 3 0 3 0 0
............................................................GAGGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 6.00 6 4 2 0 0 0
..................................................................................................AAGACCTACTTATCTACCAACAGC.......................................................... 24 1 1 6.00 6 3 3 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTA.................................................................................................. 22 1 1 5.00 5 4 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGC................................................................................................. 23 1 1 5.00 5 1 4 0 0 0
............................................................AAGGTAGAAAGAACAGGTCTTGT................................................................................................. 23 1 1 5.00 5 3 2 0 0 0
............................................................AAGGCAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 5.00 5 1 4 0 0 0
..............................................................GGTAGATAGAACAGGTCTTGT................................................................................................. 21 0 1 5.00 5 3 2 0 0 0
............................................................AAGGGAGATAGAACAGGTCTTG.................................................................................................. 22 1 1 5.00 5 1 1 0 3 0
...........................................................TGAGGTAGATAGAACAGGTCTTGT................................................................................................. 24 2 1 4.00 4 2 2 0 0 0
...................................................................................................AGACCTACTTTTCTACCAACA............................................................ 21 0 1 4.00 4 1 3 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTTA............................................................................................... 24 1 1 4.00 4 1 3 0 0 0
............................................................AAGGTAGATAGAACAGGT...................................................................................................... 18 0 1 4.00 4 1 3 0 0 0
............................................................AAGGTAGATAAAACAGGTCTTGT................................................................................................. 23 1 1 4.00 4 2 2 0 0 0
...................................................................................................AGACCTACTTTTCTACCAACAGC.......................................................... 23 0 1 4.00 4 3 1 0 0 0
............................................................TAGGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 4.00 4 2 2 0 0 0
............................................................AAGGTAGATGGAACAGGTCTTGT................................................................................................. 23 1 1 4.00 4 3 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTA................................................................................................ 24 1 1 4.00 4 2 2 0 0 0
............................................................AAGGGAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 4.00 4 1 2 1 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTA................................................................................................ 23 1 1 3.00 3 0 0 2 1 0
...........................................................CAAGGTAGATAGAACAGGTCTTGT................................................................................................. 24 1 1 3.00 3 3 0 0 0 0
..................................................................................................AAGACCTACTTATCTACCAACAG........................................................... 23 1 1 3.00 3 1 2 0 0 0
....................................................................................................GACCTACTTATCTACCAACAGC.......................................................... 22 1 1 3.00 3 0 3 0 0 0
............................................................AAGGTGGATAGAACAGGTCTTGT................................................................................................. 23 1 1 3.00 3 1 2 0 0 0
..............................................................................................ATTCAAGACCTACTTTTCTACCAACAGCA......................................................... 29 0 1 3.00 3 3 0 0 0 0
............................................................AATGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 3.00 3 0 0 0 3 0
............................................................AAGGTAGATAGAACAGGTCCTGT................................................................................................. 23 1 1 3.00 3 2 1 0 0 0
...................................................................................................AGACCTACTTATCTACCAACAGCT......................................................... 24 2 1 3.00 3 0 3 0 0 0
............................................................AAGGTAGATAGGACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
.................................................................................................CAAGACCTACTTATCTACCAACA............................................................ 23 1 1 2.00 2 0 2 0 0 0
............................................................AAAGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
............................................................AAGGTAGATAGAACAGGCCTTG.................................................................................................. 22 1 1 2.00 2 1 0 1 0 0
............................................................AAGGTAGATAGAACAGGTCTTTAT................................................................................................ 24 2 1 2.00 2 0 0 0 2 0
............................................................ACGGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
............................................................AAGGTAGATAGAACGGGTCTTGT................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
............................................................AAGGAAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 0 2 0 0 0
...........................................................AGAGGTAGATAGAACAGGTCTTGT................................................................................................. 24 1 1 2.00 2 2 0 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTTTT.............................................................................................. 25 1 1 2.00 2 2 0 0 0 0
............................................................ACGGTAGATAGAACAGGTCTTG.................................................................................................. 22 1 1 2.00 2 0 1 0 1 0
............................................................AAGGTAGATAGAACAGGTCTTGAA................................................................................................ 24 2 1 2.00 2 1 0 0 1 0
...............................................................................................TCCAAGACCTACTTATCTACCAACAGCC......................................................... 28 3 1 2.00 2 0 2 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTTT............................................................................................... 25 0 1 2.00 2 1 1 0 0 0
............................................................AAGGTAGACAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
............................................................AAGGTAGATAGAACAAGTCTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTTTG.............................................................................................. 25 0 1 2.00 2 0 2 0 0 0
.............................................................AGGTAGATAGGACAGGTCTTG.................................................................................................. 21 1 1 2.00 2 0 0 1 1 0
.............................................................CGGTAGATAGAACAGGTCTTG.................................................................................................. 21 1 1 2.00 2 0 0 2 0 0
............................................................AAGGTAGATAGAACAGGACTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTAA............................................................................................... 25 2 1 2.00 2 1 1 0 0 0
.............................................................................................AATTCAAGACCTACTTTTCTACCAAC............................................................. 26 0 1 2.00 2 0 0 0 2 0
................................................................................................TCAAGACCTACTTTTCTACCAAC............................................................. 23 0 1 2.00 2 0 0 2 0 0
..................................................................................................AAGACCTACTTATCTACCAAC............................................................. 21 1 1 2.00 2 2 0 0 0 0
............................................................AAGGTAGATAGAATAGGTCTTGT................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTAT............................................................................................... 25 1 1 2.00 2 1 1 0 0 0
............................................................AAGGTAGATAGAACATGTCTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
............................................................AAGATAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 0 2 0 0 0
............................................................AAGGTAGATAGAACAGGTATTGT................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTAT................................................................................................. 23 1 1 2.00 2 0 1 0 1 0
............................................................AGGGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 0 2 0 0 0
...........................................................AAAGGTAGATAGAACAGGTCT.................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
............................................................AAGGTTGATAGAACAGGTCTTGT................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
............................................................AAGGTAGATAGAACAGGGTTTGT................................................................................................. 23 2 1 2.00 2 1 1 0 0 0
............................................................AACGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGCAGATAGAACAGGTCTTGAA................................................................................................ 24 3 1 1.00 1 0 0 0 1 0
.............................................................AGGTAGATAGAGCAGGTCTTGTTTT.............................................................................................. 25 2 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAGCAGGTCTTGT................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
.............................................................GGGTAGATAGAACAGGTCTTGT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTTGT.............................................................................................. 25 2 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGATCAGGTCTTGT................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
............................................................AAGGAAGATAGAACAGGTATTGT................................................................................................. 23 2 1 1.00 1 1 0 0 0 0
.............................................................................................AATTCAAGACCTACTTTTCTACCAACAGCA......................................................... 30 0 1 1.00 1 0 1 0 0 0
...................................................................................................AGACCTACTTATCTACCAACAGTT......................................................... 24 3 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACGGGTCTTG.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..........................................................AAAAGGTAGATAGAACAGGTCT.................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
.............................................................AGGTAGATAGAACAGGGCTTGT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
...................................................................................................AGACCTACTTATCTACCAACT............................................................ 21 2 2 1.00 2 0 2 0 0 0
............................................................AAGATAGATAGAACAGGTCTTG.................................................................................................. 22 1 1 1.00 1 0 0 1 0 0
.............................................................AGGTAGATAGAACAGATCTTGT................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................................................................AAGACCTACTTTTCTACCAACAGCA......................................................... 25 0 1 1.00 1 0 1 0 0 0
.............................................................AGGTAGATAGAACAGGCCTTG.................................................................................................. 21 1 1 1.00 1 0 0 1 0 0
............................................................AAGGTAGATAGAACAGGTCTTTT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATCGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.............................................................AGGCAGATAGAACAGGTCTTG.................................................................................................. 21 1 1 1.00 1 0 0 1 0 0
............................................................AGGGTAGATAGAACAGGTCTTG.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGAAA............................................................................................... 25 3 2 1.00 2 0 2 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTAT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..................................................................................................AAGACCTACTTATCTACCAACAGT.......................................................... 24 2 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTGA............................................................................................... 25 2 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTAA................................................................................................. 23 2 2 1.00 2 0 0 0 2 0
...............................................................................................TTCAAGACCTACTTTTCTACCAACAGCA......................................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................AAGGGAGATAGAACAGGTCTT................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................CAGGTAGATAGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCCTG.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAAATAGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGG....................................................................................................... 17 0 1 1.00 1 1 0 0 0 0
...........................................................AAAGGTAAATAGAACAGGTCT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................AATTCAAGACCTACTTTTCTACCAACAGC.......................................................... 29 0 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATAGAACTGGTCTTGT................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
..........................................................AAAAGGTAGATAGAACAGGTCTT................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCGTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.............................................................AGGTAGATAGAACGGGTCTTGT................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGCTAGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGAT................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATACAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
....................................................................................................GACCTACTTTTCTACCAACA............................................................ 20 0 1 1.00 1 0 1 0 0 0
..........................................................AAAAGGTAGATAGAATAGGTCTTG.................................................................................................. 24 1 1 1.00 1 0 0 1 0 0
............................................................AAGGTAGATAGTACAGGTCTTG.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGGCTTG.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..............................................................GGTAGATAGAACAGGTCTTG.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
...................................................................................................AGACCTACTTTTCTACCAACAGCT......................................................... 24 1 1 1.00 1 0 0 0 0 1
...................................................................................................AGACCTACTTTTCTACCCACA............................................................ 21 1 1 1.00 1 0 0 1 0 0
...........................................................AAAGGTAGACAGAACAGGTCTTGT................................................................................................. 24 1 1 1.00 1 0 0 1 0 0
.............................................................AGGTAGATAGAGCAGGTCTTGT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
.............................................................AGGTAGATAGAACAGGTCT.................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
...................................................................................................AGACCTACTTTTCTACCAACAGT.......................................................... 23 1 1 1.00 1 1 0 0 0 0
.............................................................AGGTAGATAGAACAGGTTTTGT................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGCTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACACGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGAAGATAGAACAGGTCTT................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGATT............................................................................................... 25 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGTTAGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGGTAGAACAGGTCTTGT................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGTCCTT.................................................................................................. 22 2 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAAAAGGTCTTGT................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTATA................................................................................................ 24 2 1 1.00 1 0 0 0 1 0
............................................................ACGGTAGATAGAACAGGTCTTGG................................................................................................. 23 2 1 1.00 1 0 0 1 0 0
...........................................................AAAGGTAGATAGAACAGGTCTT................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................................................AAGGTCGATAGAACAGGTCTTG.................................................................................................. 22 1 1 1.00 1 0 0 1 0 0
.............................................................AGGCAGATAGAACAGGTCTTGT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
.............................................................AGGTAGATAGAACAGGTCTTGTTTA.............................................................................................. 25 1 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTTA............................................................................................... 25 1 1 1.00 1 0 1 0 0 0
.............................................................AGGCAGATAGAACAGGTCTTGTT................................................................................................ 23 1 1 1.00 1 0 1 0 0 0
............................................................AAGGTAGATTGAACAGGTCTTG.................................................................................................. 22 1 1 1.00 1 0 0 1 0 0
............................................................AAGGTAGATAGAACAGGTCTTGTTTTT............................................................................................. 27 2 1 1.00 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGTA..................................................................................................... 19 1 3 0.67 2 2 0 0 0 0
............................................................GAGGTAGATAGAACAGGTCTT................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
............................................................AAGGTAGATAGAACAGGGATTGT................................................................................................. 23 2 2 0.50 1 0 1 0 0 0
............................................................AAGGTAGATAGAACA......................................................................................................... 15 0 6 0.50 3 2 0 1 0 0
............................................................AAGGTAGATAGAATAGGTCTTG.................................................................................................. 22 1 2 0.50 1 0 0 0 1 0
.............................................................AGGTAGAAAGAACAGGTCTTGT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0
............................................................AAGGTAGATAGAATAGGTCTTGA................................................................................................. 23 2 2 0.50 1 0 0 1 0 0
............................................................AAGGTAGATAGAACAGGTATTGA................................................................................................. 23 2 3 0.33 1 0 0 0 1 0
.............................................................AGGTAGATAGAGCAGGTCTTGA................................................................................................. 22 2 4 0.25 1 0 0 1 0 0
............................................................AAGGTAGATAGAACAGGCCGTGA................................................................................................. 23 3 8 0.13 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGTTTGT.................................................................................................. 22 3 20 0.05 1 0 1 0 0 0
............................................................AAGGTAGATAGAACAGGTAA.................................................................................................... 20 2 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TCTGATTCTTTTGTCTCAGGAACTTCAGTTCGGCTAAGACGAAAATCGGAGGATTTACTTTTCCATCTATCTTGTCCAGAACAAACGTTCTACTTAAGTTCTGGATGAAAAGATGGTTGTCGTTAATGTGTGAAAGGTAACAGAAGACATCTTTCATCGTCATCATGTAAATGTCTACTC

*********************************************.................((((((.(((..((((((((....((...))....))))))))..)))))))))...................********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:40 AM