ID:ssc-mir-183 |
Coordinate:chr18:20030651-20030720 + |
Confidence:Known |
Class:Unknown |
Genomic Locale:intergenic |
[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
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|
| -37.4 | -37.4 | -37.4 |
 |
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 |
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AGCGGGAGTCTCTCCGCAGGGTCAGCAGGCCGGAGAGCGCGACTCCTGTTCTGTGTATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGAATTACCGAAGGGCCATAAACAGAGCAGAGACAGATCCGCGAGTGTCTCAGGAGCACCTCGGCCCCCGCGCTG
****************************************..(((.((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).)))))))))))...**************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR066809 ovary |
SRR066810 testes |
SRR1274764 testes |
SRR139076 testes |
SRR1274763 ovary |
SRR139075 testes |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................TATGGCACTGGTAGAATTCACT............................................................................................. | 22 | 0 | 1 | 1353.00 | 1353 | 835 | 377 | 119 | 5 | 6 | 11 |
| .......................................................TATGGCACTGGTAGAATTCACTG............................................................................................ | 23 | 0 | 1 | 830.00 | 830 | 453 | 209 | 143 | 5 | 18 | 2 |
| ........................................................ATGGCACTGGTAGAATTCACTG............................................................................................ | 22 | 0 | 1 | 709.00 | 709 | 457 | 155 | 73 | 9 | 14 | 1 |
| ........................................................ATGGCACTGGTAGAATTCACT............................................................................................. | 21 | 0 | 1 | 600.00 | 600 | 372 | 175 | 44 | 8 | 0 | 1 |
| .......................................................TATGGCACTGGTAGAATTCAC.............................................................................................. | 21 | 0 | 1 | 212.00 | 212 | 60 | 105 | 39 | 4 | 3 | 1 |
| ........................................................ATGGCACTGGTAGAATTCACTGT........................................................................................... | 23 | 0 | 1 | 190.00 | 190 | 28 | 75 | 79 | 4 | 4 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGT........................................................................................... | 24 | 0 | 1 | 141.00 | 141 | 26 | 53 | 61 | 0 | 0 | 1 |
| .......................................................TATGGCACTGGTAGAATTCACTGA........................................................................................... | 24 | 1 | 1 | 89.00 | 89 | 15 | 27 | 38 | 5 | 1 | 3 |
| ........................................................ATGGCACTGGTAGAATTCACTGA........................................................................................... | 23 | 1 | 1 | 86.00 | 86 | 34 | 29 | 17 | 6 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCA............................................................................................... | 20 | 0 | 1 | 68.00 | 68 | 27 | 39 | 1 | 1 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCAC.............................................................................................. | 20 | 0 | 1 | 50.00 | 50 | 25 | 16 | 7 | 0 | 0 | 2 |
| .......................................................TATGGCACTGGTAGAATTCACTGAA.......................................................................................... | 25 | 2 | 1 | 23.00 | 23 | 0 | 1 | 19 | 3 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTA............................................................................................ | 23 | 1 | 1 | 20.00 | 20 | 4 | 15 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTC................................................................................................ | 19 | 0 | 1 | 11.00 | 11 | 2 | 4 | 0 | 3 | 0 | 2 |
| ........................................................ATGGCACTGGTAGAATTCA............................................................................................... | 19 | 0 | 1 | 8.00 | 8 | 3 | 5 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACA............................................................................................. | 22 | 1 | 1 | 7.00 | 7 | 2 | 2 | 3 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGAAA......................................................................................... | 25 | 2 | 1 | 7.00 | 7 | 0 | 0 | 6 | 1 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTA............................................................................................ | 22 | 1 | 1 | 6.00 | 6 | 1 | 5 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTAA......................................................................................... | 25 | 1 | 1 | 6.00 | 6 | 0 | 1 | 5 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGAA.......................................................................................... | 24 | 2 | 1 | 5.00 | 5 | 0 | 1 | 4 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGAAA......................................................................................... | 26 | 2 | 1 | 5.00 | 5 | 0 | 1 | 4 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTA.......................................................................................... | 25 | 1 | 1 | 4.00 | 4 | 1 | 2 | 1 | 0 | 0 | 0 |
| ..............................................................CTGGTAGAATTCACTGT........................................................................................... | 17 | 0 | 1 | 4.00 | 4 | 0 | 0 | 4 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTTA......................................................................................... | 25 | 1 | 1 | 4.00 | 4 | 0 | 4 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTT............................................................................................ | 23 | 1 | 1 | 4.00 | 4 | 0 | 4 | 0 | 0 | 0 | 0 |
| .......................................................CATGGCACTGGTAGAATTCACTG............................................................................................ | 23 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 | 0 | 0 | 0 |
| ......................................................GTATGGCACTGGTAGAATTCACT............................................................................................. | 23 | 0 | 1 | 3.00 | 3 | 2 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGC........................................................................................... | 23 | 1 | 1 | 3.00 | 3 | 0 | 3 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGAATTACCGAAGGGC........................................................... | 55 | 0 | 1 | 3.00 | 3 | 0 | 0 | 3 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTTACT............................................................................................. | 22 | 1 | 1 | 3.00 | 3 | 1 | 1 | 1 | 0 | 0 | 0 |
| ....................................................TTATATGGCACTGGTAGAATTCACT............................................................................................. | 25 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ........................................................GTGGCACTGGTAGAATTCACTG............................................................................................ | 22 | 1 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCCCT............................................................................................. | 21 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................GTATGGCACTGGTAGAATTCAC.............................................................................................. | 22 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACCG............................................................................................ | 23 | 1 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTG.......................................................................................... | 25 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................TGTATGGCACTGGTAGAATTCACT............................................................................................. | 24 | 0 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 |
| ......................................................CTATGGCACTGGTAGAATTCACTG............................................................................................ | 24 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................TTAATGGCACTGGTAGAATTCACTG............................................................................................ | 25 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACAGGTAGAATTCACT............................................................................................. | 21 | 1 | 1 | 2.00 | 2 | 0 | 1 | 0 | 1 | 0 | 0 |
| .......................................................TATGGCACTCGTAGAATTCAC.............................................................................................. | 21 | 1 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| .......................................................TATGGCACTGGTAGAATTCATTGA........................................................................................... | 24 | 2 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCGCT............................................................................................. | 21 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAA................................................................................................... | 16 | 0 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATACACT............................................................................................. | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ....................................................TTATATGGCACTGGTAGAATTCACTG............................................................................................ | 26 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGAATTACCGAAGGG............................................................ | 55 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTT.......................................................................................... | 24 | 1 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| .........................................................TGGCACTGGTAGAATTCACTGTGAACA...................................................................................... | 27 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTAT........................................................................................... | 24 | 1 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| .........................................................TGGCACTGGTAGAATTCACTG............................................................................................ | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGC........................................................................................... | 24 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAA........................................................................................ | 26 | 0 | 1 | 2.00 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATAAT..................................................... | 22 | 1 | 1 | 2.00 | 2 | 1 | 0 | 0 | 1 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTT.......................................................................................... | 25 | 1 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................CTGGTAGAATTCACTG............................................................................................ | 16 | 0 | 6 | 1.67 | 10 | 0 | 0 | 8 | 0 | 2 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGG........................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGAATTACCGAAGGG............................................................ | 54 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTGGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................AATGGCACTGGTAGAATTCACGG............................................................................................ | 23 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................TATGGTACTGGTAGAATTCACTGA........................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGCCACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................ATTTATGGCACTGGTAGAATTCACTG............................................................................................ | 26 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACGG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGGATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGTC................................................................................... | 32 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................CACTGGTAGAATTCACTGT........................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGTTT.................................................................................. | 33 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................TGGCACTGGTAGAATTCACTGTGAA........................................................................................ | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................TGGCACTGGTAGAATTCACT............................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................ATTATGGCACTGGTAGAATTCACTG............................................................................................ | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACC............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGTACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATAGCACTGGTAGAATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAAC....................................................................................... | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATTGCACTGGTAGAATTCACTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGACACTGGTAGAATTCACTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGTCT.................................................................................. | 33 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................ATTTATGGCACTGGTAGAATTCAC.............................................................................................. | 24 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACA...................................................................................... | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGCAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATAGT..................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGT.................................................................................... | 31 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................GCACTGGTAGAATTCACTG............................................................................................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCCCTGGTAGAATTCACTGT........................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGCAC....................................................................................... | 28 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGAATTACCGAAGGGC........................................................... | 56 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGAAAA........................................................................................ | 26 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................ATTTATGGCACTGGTAGAATTCACT............................................................................................. | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATA....................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTA.......................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................TATATGGCACTGGTAGAATTCACTG............................................................................................ | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGG........................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATAAA..................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ........................................................ATGCCACTGGTAGAATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGAAT......................................................................................... | 26 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACGGGTAGAATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................GCACTGGTAGAATTCACT............................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCCCTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAGTCTCTTT.............................................................................. | 37 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGAACAG..................................................................................... | 30 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAACTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTAA........................................................................................... | 24 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................TGAGTTACCGAAGGGCCATAT...................................................... | 21 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCAT........................................................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................................................TATGACACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAACTCACTG............................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATAGCACTGGTAGAATTCACTG............................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACAGTCT.................................................................................. | 32 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGGAGAATTCAC.............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTAGTAGAATTCACTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................ATTATGGCACTGGTAGAATTCACT............................................................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATTGCACTGGTAGAATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................CTATGGCACTGGTAGAATTCACT............................................................................................. | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGACACTGGTAGAATTCACTGT........................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTTACC............................................................................................. | 22 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................AAGGCACTGGTAGAATTCACTGA........................................................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTCGAATTCACTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................AATGGCACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................CTGGCACTGGTAGAATTCACTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGA........................................................................ | 42 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................................TTAATGGCACTGGTAGAATTCACT............................................................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATT................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACAGT.................................................................................... | 30 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCATTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATAATT.................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATAACACTGGTAGAATTCACT............................................................................................. | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................TTGGCACTGGTAGAATTCACTG............................................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTGAACAGTC................................................................................... | 31 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCACTGTGA......................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATAAAC.................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTAAAA....................................................................................... | 27 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................GTATGGCACTGGTAGAATTCACTG............................................................................................ | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATAGCACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TACGGCACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TAAGGCACTGGTAGAATTCACT............................................................................................. | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGATAGAATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATCCACTG............................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGTTAT........................................................................................ | 26 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAGTTCACTG............................................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACCGGTAGAATTCACT............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACA............................................................................................. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................AGGGCACTGGTAGAATTCACT............................................................................................. | 21 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGTACTGGTAGAATTCA............................................................................................... | 20 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................CACTGGTAGAATTCACTGA........................................................................................... | 19 | 1 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................................ATAATGGCACTGGTAGAATTCACTG............................................................................................ | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGCAGAATTCACT............................................................................................. | 21 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..............................................................CTGGTAGAATTCACT............................................................................................. | 15 | 0 | 16 | 0.50 | 8 | 0 | 1 | 6 | 0 | 1 | 0 |
| ........................................................ATGGTACTGGTAGAATTCACTGT........................................................................................... | 23 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........................................................ATGGCACTGGTAGAATTCACTGAAT......................................................................................... | 25 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................TGAATTACCGAAGGGCCATT....................................................... | 20 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................ATGGCACTGGTGGAATTCAC.............................................................................................. | 20 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................AATGGCACTGGAAGAATTCACGG............................................................................................ | 23 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................ATGCACTGGTAGAATTCACTG............................................................................................ | 21 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGA.................................................................................................... | 15 | 0 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................TATGGCACTGGTAGAATTCAAAA............................................................................................ | 23 | 3 | 8 | 0.13 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................CACTGTGAACAGTCT.................................................................................. | 15 | 0 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................TGGTAGAATTCACTGT........................................................................................... | 16 | 0 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................................TGAATGGCACTGGTAGA.................................................................................................... | 17 | 1 | 17 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
|
TCGCCCTCAGAGAGGCGTCCCAGTCGTCCGGCCTCTCGCGCTGAGGACAAGACACATACCGTGACCATCTTAAGTGACACTTGTCAGAGCCAGTCACTTAATGGCTTCCCGGTATTTGTCTCGTCTCTGTCTAGGCGCTCACAGAGTCCTCGTGGAGCCGGGGGCGCGAC
****************************************..(((.((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).)))))))))))...**************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR066809 ovary |
SRR066810 testes |
SRR1274763 ovary |
SRR139075 testes |
SRR1274764 testes |
|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................TCACTTAATGGCTTCCCGGTATT...................................................... | 23 | 0 | 1 | 9.00 | 9 | 6 | 2 | 0 | 1 | 0 |
| ............................................................................................GTCACTTAATGGCTTCCCGGTATT...................................................... | 24 | 0 | 1 | 5.00 | 5 | 2 | 1 | 2 | 0 | 0 |
| .....................................................ACATACCGTGACCATCTTAAGTG.............................................................................................. | 23 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 |
| ...............................................................................................ACTTAATGGCTTCCCGGTATT...................................................... | 21 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 |
| ....................................................CACATACCGTGACCATCTTAAGTG.............................................................................................. | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 |
| ................................................................................................CTTAATGGCTTCCCGGTATT...................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................CACTTAATGGCTTCCCGGTATT...................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................TTGTCACTTAATGGCTTCCCGGTATT...................................................... | 26 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 |
| ............................................................................................GTCACTTAATGGCTTCCCGGTA........................................................ | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................CACTTAATGGCTTACCGGTATT...................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
Generated: 09/01/2015 at 11:31 AM