ID:

ssc-mir-16-1

 Coordinate:

chr13:108388290-108388366 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.0 -36.6 -36.6
mature

  1. ssc-mir-16-1  chr13:108388297-108388318 +
  2. JH118724-1:70565-70586 +
star

Sense Strand Reads

TTTTCATCATCATGTGTTAATTTTCTGTTTAGATGGACTGACATACTTGTTCCGCTCTAGCAGCACGTAAATATTGGCGTAGTAAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGCGTGACAGGGATATAGCAACTATCATTTCTGTTTGAATTTTCCTTTTAAGATAA

******************************************...((((((.((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..)))).))))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR139076

testes
.........................................................TAGCAGCACGTAAATATTGGCG.................................................................................................. 22 0 2 44056.00 88112 34007 30841 10857 5055 4473 2879
.........................................................TAGCAGCACGTAAATATTGGC................................................................................................... 21 0 2 2957.50 5915 2244 1886 835 405 376 169
.........................................................TAGCAGCACGTAAATATTGGCGT................................................................................................. 23 0 2 2725.00 5450 1267 1156 2244 217 83 483
.........................................................TAGCAGCACGTAAATATTGGCGA................................................................................................. 23 1 2 974.00 1948 224 215 1159 89 43 218
.........................................................TAGCAGCACGTAAATATTGGCA.................................................................................................. 22 1 2 680.00 1360 287 242 506 117 112 96
.........................................................TAGCAGCACGTAAATATTGG.................................................................................................... 20 0 2 346.00 692 195 141 277 9 5 65
..........................................................AGCAGCACGTAAATATTGGCG.................................................................................................. 21 0 2 205.50 411 159 174 45 4 2 27
.........................................................CAGCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 193.50 387 186 183 11 2 1 4
.........................................................TAGCAGCACGTAAATATTGGCAA................................................................................................. 23 2 2 132.50 265 6 11 201 6 2 39
........................................................CTAGCAGCACGTAAATATTGGCG.................................................................................................. 23 0 1 82.00 82 34 29 7 2 1 9
.........................................................TAGCAGCACGTAAATATTG..................................................................................................... 19 0 2 77.00 154 7 11 116 0 1 19
.........................................................TAGCAGCACGTAAATATTGGCGTA................................................................................................ 24 0 1 67.00 67 18 21 19 2 1 6
.........................................................TAGCAGCACGTAAATATTGGCAT................................................................................................. 23 1 2 51.00 102 9 5 77 1 1 9
.........................................................TAGCAGCATGTAAATATTGGCG.................................................................................................. 22 1 2 48.50 97 38 26 24 1 1 7
.........................................................TAGCAGCACGTAAATATTGGCGAA................................................................................................ 24 1 1 38.00 38 3 5 21 1 1 7
.........................................................TAGCAGCACGTAAATATTGGA................................................................................................... 21 1 2 37.00 74 22 16 34 2 0 0
.........................................................TAGTAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 36.00 72 21 19 28 0 0 4
...........................................................GCAGCACGTAAATATTGGCG.................................................................................................. 20 0 2 31.50 63 19 21 16 1 3 3
.........................................................TAGCAGCACGTAAATATTGGCGC................................................................................................. 23 1 2 31.00 62 25 15 7 8 4 3
.........................................................TAGCAGCACGTACATATTGGCG.................................................................................................. 22 1 2 31.00 62 6 2 45 0 0 9
.........................................................TAGCAGCACGTAAATATTGGTG.................................................................................................. 22 1 2 31.00 62 22 22 14 0 1 3
.........................................................TAGCAGCACGTCAATATTGGCG.................................................................................................. 22 1 2 28.00 56 9 4 35 2 1 5
.........................................................TAGCAGTACGTAAATATTGGCG.................................................................................................. 22 1 2 26.50 53 12 12 21 0 3 5
.........................................................TAGCAGCACGTGAATATTGGCG.................................................................................................. 22 1 2 25.00 50 22 13 10 1 0 4
...................................................................................................ACCAATATTATTGTGCTGCTTT........................................................ 22 0 1 25.00 25 6 8 9 1 0 1
.............................................................AGCACGTAAATATTGGCG.................................................................................................. 18 0 2 23.00 46 20 13 10 0 0 3
.........................................................TAGCAGCACGCAAATATTGGCG.................................................................................................. 22 1 2 23.00 46 27 10 8 1 0 0
.........................................................TAGCAGCACGTAAATATTGGCT.................................................................................................. 22 1 2 22.50 45 8 8 18 2 6 3
.........................................................TAGCAGCACGTAAATAT....................................................................................................... 17 0 2 22.50 45 0 1 2 29 13 0
.........................................................TAGCAGCACGTAACTATTGGCG.................................................................................................. 22 1 2 21.00 42 4 0 31 0 0 7
.........................................................TAGCAGCACGTAAATATTGTCG.................................................................................................. 22 1 2 20.00 40 5 3 29 1 0 2
.........................................................TAGCAGCGCGTAAATATTGGCG.................................................................................................. 22 1 2 20.00 40 9 13 12 0 1 5
.........................................................TAGCAGCACATAAATATTGGCG.................................................................................................. 22 1 2 16.50 33 11 15 4 0 2 1
.........................................................TAGCAGCACGTAAATATTTGCG.................................................................................................. 22 1 2 16.00 32 3 2 23 0 1 3
.........................................................TAGCAGCACGTAAATATTGGAA.................................................................................................. 22 2 2 16.00 32 17 4 5 0 4 2
.........................................................TAGCGGCACGTAAATATTGGCG.................................................................................................. 22 1 2 16.00 32 18 9 5 0 0 0
.........................................................TGGCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 15.50 31 12 17 1 0 0 1
.........................................................TAGCAGCACGTAAGTATTGGCG.................................................................................................. 22 1 2 15.50 31 9 11 8 1 0 2
.........................................................TAGCAGCACGTAAATATTAGCG.................................................................................................. 22 1 2 15.00 30 8 8 12 0 1 1
.........................................................TAGCAGCACGTAAAAATTGGCG.................................................................................................. 22 1 2 14.50 29 7 7 9 3 1 2
..............................................................GCACGTAAATATTGGCG.................................................................................................. 17 0 2 14.00 28 20 5 0 2 1 0
.........................................................TAGCATCACGTAAATATTGGCG.................................................................................................. 22 1 2 14.00 28 6 7 11 0 0 4
.........................................................AAGCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 14.00 28 6 15 5 0 1 1
.........................................................TAGCAGCACGTAGATATTGGCG.................................................................................................. 22 1 2 13.50 27 14 9 3 0 0 1
.........................................................TAGCAGCACGTAAATATTGGCC.................................................................................................. 22 1 2 12.50 25 12 7 1 5 0 0
.........................................................TAGCAGCACGTAAATGTTGGCG.................................................................................................. 22 1 2 12.50 25 7 14 3 1 0 0
.........................................................TAGCCGCACGTAAATATTGGCG.................................................................................................. 22 1 2 12.50 25 1 1 19 0 0 4
.........................................................TAGCAGCCCGTAAATATTGGCG.................................................................................................. 22 1 2 12.00 24 8 0 8 0 1 7
.........................................................TATCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 12.00 24 9 6 6 0 0 3
...................................................................................................ACCAATATTATTGTGCTGCTT......................................................... 21 0 1 12.00 12 0 3 7 0 0 2
.........................................................TAGCAGCACGTAAATCTTGGCG.................................................................................................. 22 1 2 12.00 24 3 7 9 1 0 4
......................................................ATTTAGCAGCACGTAAATATTGGCG.................................................................................................. 25 2 2 11.50 23 12 11 0 0 0 0
.........................................................TAGCAGCACGTAAACATTGGCG.................................................................................................. 22 1 2 11.00 22 12 6 3 0 0 1
.........................................................TAGCAGCACGTAAATATTGGCGTAGTAAA........................................................................................... 29 0 1 11.00 11 0 0 0 0 0 11
.........................................................TAGCAGCACGTAAATATTGGCGTAGT.............................................................................................. 26 0 1 11.00 11 6 3 0 2 0 0
.........................................................TAGCAGCACGTAAATATT...................................................................................................... 18 0 2 11.00 22 3 2 16 1 0 0
.........................................................TAGCAGCACGTAAATATCGGCG.................................................................................................. 22 1 2 11.00 22 5 9 5 1 2 0
.........................................................CAGCAGCACGTAAATATTGGC................................................................................................... 21 1 2 10.50 21 11 10 0 0 0 0
..........................................................AGCAGCACGTAAATATTGGCGT................................................................................................. 22 0 2 10.00 20 3 8 5 0 0 4
....................................................CGTGGTAGCAGCACGTAAATATTGGCG.................................................................................................. 27 3 1 10.00 10 0 0 0 8 2 0
.........................................................TAGCAGCACGTAAATATTGGT................................................................................................... 21 1 2 10.00 20 0 3 16 1 0 0
........................................................ATAGCAGCACGTAAATATTGGCG.................................................................................................. 23 1 2 9.50 19 9 6 2 0 0 2
.........................................................TAGCAACACGTAAATATTGGCG.................................................................................................. 22 1 2 9.50 19 5 9 5 0 0 0
..........................................................AGCAGCACGTAAATATTGGC................................................................................................... 20 0 2 9.50 19 7 6 5 1 0 0
.........................................................TAGCAGCACGTAAATATAGGCG.................................................................................................. 22 1 2 9.50 19 7 5 5 0 0 2
.........................................................TAGCAGCACGTAAATATTGGCGTAA............................................................................................... 25 1 2 9.00 18 0 6 3 0 1 8
....................................................................................................CCAATATTATTGTGCTGCTTTA....................................................... 22 0 1 9.00 9 1 0 3 1 0 4
.........................................................TAGCAGCACGTAAATATTGACG.................................................................................................. 22 1 2 9.00 18 6 8 3 0 0 1
.........................................................TAGCAGCACGTAAATACTGGCG.................................................................................................. 22 1 2 9.00 18 3 7 5 1 1 1
................................................................ACGTAAATATTGGCG.................................................................................................. 15 0 3 9.00 27 14 9 0 4 0 0
...................................................CCGTGGTAGCAGCACGTAAATATTGGCG.................................................................................................. 28 3 1 9.00 9 0 0 0 5 4 0
..............................................................GCACGTAAATATTGGCGA................................................................................................. 18 1 2 8.50 17 7 10 0 0 0 0
.........................................................CAGCAGCACGTAAATATTGGCGT................................................................................................. 23 1 2 8.00 16 4 7 3 1 0 1
...............................................................CACGTAAATATTGGCG.................................................................................................. 16 0 2 8.00 16 10 5 0 1 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTAGTAA............................................................................................ 28 0 1 8.00 8 0 0 0 0 0 8
.........................................................TAGCAGCTCGTAAATATTGGCG.................................................................................................. 22 1 2 8.00 16 6 6 2 1 0 1
.........................................................TAGCAGCACGTAACTATTGGCGT................................................................................................. 23 1 2 7.00 14 0 0 14 0 0 0
.........................................................TAGCAGCACGTAAATTTTGGCG.................................................................................................. 22 1 2 7.00 14 7 2 3 0 0 2
.........................................................TAGCAGCACGTAAATATTGGCTT................................................................................................. 23 1 2 7.00 14 0 0 11 0 0 3
.........................................................TAGCAGCACGGAAATATTGGCG.................................................................................................. 22 1 2 7.00 14 1 0 11 0 0 2
............................................................CAGCACGTAAATATTGGCG.................................................................................................. 19 0 2 7.00 14 5 6 2 0 0 1
.........................................................TCGCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 6.50 13 3 0 7 0 1 2
.........................................................TAGCAGCACGTAATTATTGGCG.................................................................................................. 22 1 2 6.50 13 2 4 6 0 0 1
.........................................................TAACAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 6.00 12 5 2 4 0 0 1
...................................................................................................ACCAATATTATTGTGCTGCTTTA....................................................... 23 0 1 6.00 6 1 0 5 0 0 0
....................................TCTGACATACTTGTTCCGCTC........................................................................................................................ 21 1 1 6.00 6 1 5 0 0 0 0
........................................................CTAGCAGCACGTAAATATTGGC................................................................................................... 22 0 1 6.00 6 2 4 0 0 0 0
.........................................................TAGCTGCACGTAAATATTGGCG.................................................................................................. 22 1 2 5.50 11 4 2 5 0 0 0
.........................................................TAGCAGCACGTAAATAATGGCG.................................................................................................. 22 1 2 5.50 11 7 3 1 0 0 0
.........................................................TAGCAGCACGTAAATATTGCCG.................................................................................................. 22 1 2 5.50 11 1 4 5 0 0 1
.........................................................TAGCAGCACTTAAATATTGGCG.................................................................................................. 22 1 2 5.50 11 3 4 2 0 0 2
.........................................................TAGCAGCACGTAAATATTGGCGG................................................................................................. 23 1 2 5.00 10 1 0 5 3 0 1
.........................................................TAGAAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 5.00 10 5 3 0 0 1 1
.........................................................TAGCAGCACGTAAAAATTGGC................................................................................................... 21 1 2 5.00 10 3 1 2 1 2 1
.........................................................TAGCAGCACGTATATATTGGCG.................................................................................................. 22 1 2 5.00 10 2 4 1 0 0 3
.........................................................TAGCAGCACGAAAATATTGGCG.................................................................................................. 22 1 2 5.00 10 0 2 6 0 1 1
.........................................................TAGGAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 5.00 10 7 2 0 0 0 1
.........................................................TAGCAGCAAGTAAATATTGGCG.................................................................................................. 22 1 2 5.00 10 2 3 3 0 2 0
........................................................CTAGCAGCACGTAAATATTGGCGT................................................................................................. 24 0 1 5.00 5 1 0 2 0 0 2
.........................................................TAGCAGCACGTAAATATTGGCGTAG............................................................................................... 25 0 1 5.00 5 4 1 0 0 0 0
.........................................................TAGTAGCACGTAAATATTGGC................................................................................................... 21 1 2 4.50 9 0 1 6 0 1 1
.........................................................TAGCAGCACGTAAATATTGGCGAAA............................................................................................... 25 2 2 4.50 9 0 3 3 0 1 2
.........................................................TAGCAGCACGTAAATA........................................................................................................ 16 0 2 4.50 9 2 0 5 1 0 1
.........................................................TAGCAGCACCTAAATATTGGCG.................................................................................................. 22 1 2 4.50 9 4 1 2 1 0 1
.........................................................TAGCAGCACGTAAATATTGGAG.................................................................................................. 22 1 2 4.50 9 2 3 2 0 1 1
............................................................TAGCACGTAAATATTGGCG.................................................................................................. 19 1 2 4.00 8 1 0 7 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTAT............................................................................................... 25 1 1 4.00 4 2 1 0 0 1 0
.........................................................TAGCAGCACGTAAATATTGTCGT................................................................................................. 23 1 2 4.00 8 0 0 8 0 0 0
...................................................................................................ACCAATATTATTGTGCTGCTTTT....................................................... 23 1 1 4.00 4 0 0 2 0 0 2
.........................................................TAGCAGCACGTAAATATTGGTGT................................................................................................. 23 1 2 4.00 8 2 0 5 0 1 0
.........................................................TAGCAGCATGTAAATATTGGCGT................................................................................................. 23 1 2 4.00 8 0 1 5 0 0 2
.........................................................TAGCACCACGTAAATATTGGCG.................................................................................................. 22 1 2 4.00 8 3 0 4 0 1 0
.........................................................TAGCAGCACGTAAATATTGGCGTAGTAAAA.......................................................................................... 30 0 1 4.00 4 0 1 0 0 0 3
..........................................................AGCAGCACGTAAATATTGGCGA................................................................................................. 22 1 2 4.00 8 0 0 7 0 0 1
.........................................................TAGCAGTACGTAAATATTGGCGT................................................................................................. 23 1 2 4.00 8 0 0 6 0 0 2
.........................................................TAGCAGCACGTACATATTGGCGT................................................................................................. 23 1 2 3.50 7 0 0 4 0 0 3
.........................................................TAGCAGCACGTAAATATTGGGG.................................................................................................. 22 1 2 3.50 7 1 4 0 2 0 0
.........................................................TAGCATCACGTAAATATTGGCGT................................................................................................. 23 1 2 3.50 7 1 1 5 0 0 0
.........................................................TAGCAGAACGTAAATATTGGCG.................................................................................................. 22 1 2 3.50 7 5 0 2 0 0 0
.........................................................TACCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 3.50 7 3 3 1 0 0 0
.........................................................GAGCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 3.50 7 3 3 1 0 0 0
.........................................................TAGCAGCACGTCAATATTGGCGA................................................................................................. 23 2 2 3.50 7 0 0 5 0 0 2
...................................................................................................ACCAATATTACTGTGCTGCT.......................................................... 20 1 1 3.00 3 2 1 0 0 0 0
....................................................................................................CCAATATTATTGTGCTGCTTT........................................................ 21 0 1 3.00 3 0 0 2 0 1 0
..............................................................GCACGTAAATATTGGCGT................................................................................................. 18 0 2 3.00 6 4 2 0 0 0 0
.........................................................TAGCAGCAGGTAAATATTGGCG.................................................................................................. 22 1 2 3.00 6 5 0 0 0 0 1
.........................................................TGGCAGCACGTAAATATTGGC................................................................................................... 21 1 2 3.00 6 2 2 1 0 0 1
........................................................CTAGCAGCACGTAAATATTGGCGA................................................................................................. 24 1 1 3.00 3 0 0 1 0 0 2
.........................................................TAGCAGCACGTAAATATTGGCGGA................................................................................................ 24 1 1 3.00 3 0 0 0 3 0 0
..........................................................................................................................GCGTGACAGGGATATAGCAA................................... 20 0 1 3.00 3 0 0 3 0 0 0
.........................................................TAGCAGCACGTCAATATTGGCGT................................................................................................. 23 1 2 3.00 6 0 1 4 0 0 1
...................................................................................................ACCAATATTATTGTGCTGCT.......................................................... 20 0 1 3.00 3 0 1 1 0 1 0
......................................................TTATAGCAGCACGTAAATATTGGCG.................................................................................................. 25 2 1 3.00 3 2 1 0 0 0 0
.........................................................TAGCAGCATGTAAATATTGGCAT................................................................................................. 23 2 2 3.00 6 0 0 6 0 0 0
.........................................................TAGCAGCACGTAAATATTGTC................................................................................................... 21 1 2 3.00 6 0 0 5 0 0 1
.........................................................TAGCAGCACGTAAATATTGCG................................................................................................... 21 2 2 3.00 6 1 0 4 0 0 1
...................................................................................................ACCAATATTATTGTGCTGCTTTAT...................................................... 24 1 1 3.00 3 0 0 0 0 0 3
.........................................................TAGTAGCACGTAAATATTGGCGT................................................................................................. 23 1 2 2.50 5 0 1 3 0 0 1
.........................................................TAGCAGCATGTAAATATTGGC................................................................................................... 21 1 2 2.50 5 0 2 3 0 0 0
.........................................................TAGCAGCACGTAGATATTGGC................................................................................................... 21 1 2 2.50 5 2 2 1 0 0 0
.............................................................AGCACGTAAATATTGGCGT................................................................................................. 19 0 2 2.50 5 0 0 4 0 0 1
.........................................................TAGCAGCACGTAAATATTTGC................................................................................................... 21 1 2 2.50 5 0 1 4 0 0 0
.........................................................TAGCAGCACGTAAATATTGGG................................................................................................... 21 1 2 2.50 5 2 0 3 0 0 0
.........................................................TAGCAGCACGTAAATAGTGGCG.................................................................................................. 22 1 2 2.50 5 1 4 0 0 0 0
...........................................................GCAGCACGTAAATATTGGCGT................................................................................................. 21 0 2 2.50 5 1 0 4 0 0 0
.........................................................TTGCAGCACGTAAATATTGGCG.................................................................................................. 22 1 2 2.50 5 3 2 0 0 0 0
.........................................................TAGCAGCACGTAACTATTGGCA.................................................................................................. 22 2 2 2.50 5 0 0 4 1 0 0
.........................................................TAGCAGCACGCAAATATTGGCGT................................................................................................. 23 1 2 2.50 5 1 0 3 0 0 1
.........................................................TAGCAGTACGTAAATATTGGCA.................................................................................................. 22 2 2 2.50 5 0 0 4 0 0 1
.........................................................TAGCAGCACGTACATATTGGCGA................................................................................................. 23 2 2 2.00 4 0 0 1 0 0 3
.........................................................TAGCAGCACGTAAATATCGGCGT................................................................................................. 23 1 2 2.00 4 0 0 2 1 0 1
....................................................................................................CCAATATTATTGTGCTGCTTTAT...................................................... 23 1 1 2.00 2 0 0 1 0 0 1
..................................................GACGATCTAGCAGCACGTAAATATTGGCG.................................................................................................. 29 3 1 2.00 2 2 0 0 0 0 0
...........................................................GCAGCACGTAAATATTGGCGA................................................................................................. 21 1 2 2.00 4 1 1 1 0 0 1
.........................................................TAGCAGCACATAAATATTGGCGT................................................................................................. 23 1 2 2.00 4 1 0 3 0 0 0
.........................................................TAGCAGCACGTAAATATTCGCG.................................................................................................. 22 1 2 2.00 4 1 1 2 0 0 0
.........................................................TAGCAGCACGTAAATATTGGGT.................................................................................................. 22 2 2 2.00 4 0 0 4 0 0 0
....................................................CGTGGTAGCAGCACGTAAATATTGGC................................................................................................... 26 3 1 2.00 2 0 0 0 1 1 0
.........................................................TAGCCGCACGTAAATATTGGCGT................................................................................................. 23 1 2 2.00 4 0 0 4 0 0 0
.........................................................TAGCAGCACGTAACTATTGGCGA................................................................................................. 23 2 2 2.00 4 0 0 3 0 0 1
.........................................................TAGCAGCGCGTAAATATTGGCGT................................................................................................. 23 1 2 2.00 4 0 1 2 0 0 1
.....................................CTGACATACTTGTTCCGCTC........................................................................................................................ 20 0 1 2.00 2 1 1 0 0 0 0
...................................ATCTGACATACTTGTTCCGCTC........................................................................................................................ 22 2 1 2.00 2 2 0 0 0 0 0
.........................................................TAGCAGCACGTCACTATTGGCG.................................................................................................. 22 2 2 2.00 4 0 0 3 0 0 1
........................................................ATAGCAGCACGTAAATATTGGCGT................................................................................................. 24 1 2 2.00 4 0 0 2 0 0 2
.......................................GACATACTTGTTCCGCTC........................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGGAT............................................................................................... 25 2 1 2.00 2 0 2 0 0 0 0
.........................................................TAGCAGCACGTTAATATTGGCG.................................................................................................. 22 1 2 2.00 4 2 1 1 0 0 0
.........................................................TAGCAGCATGTAAATATTGGCGA................................................................................................. 23 2 2 2.00 4 0 0 3 0 0 1
.........................................................TAGCAGCACAGAAATATTGGCGTAG............................................................................................... 25 2 1 2.00 2 0 0 0 0 0 2
.........................................................TAGCAGCACGTAAATATTGC.................................................................................................... 20 1 2 2.00 4 0 0 4 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTAGTAAAT.......................................................................................... 30 1 1 2.00 2 0 0 0 0 0 2
.........................................................TAGCAGCACGTAAATATTGGTA.................................................................................................. 22 2 2 2.00 4 0 0 4 0 0 0
.........................................................TAGCAGTACGTAAATATTGGC................................................................................................... 21 1 2 2.00 4 0 0 3 0 0 1
.........................................................TAGCAGCACGTAAATAATGGCGT................................................................................................. 23 1 2 2.00 4 1 0 3 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGAAGA.............................................................................................. 26 2 1 2.00 2 1 0 1 0 0 0
.........................................................TAGCAGCACGTAAAT......................................................................................................... 15 0 3 1.67 5 1 0 3 0 0 1
............................................................CAGCACGTAAATATTGGCGA................................................................................................. 20 1 2 1.50 3 0 0 3 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGAC................................................................................................ 24 2 2 1.50 3 0 0 1 0 2 0
.........................................................TAGTAGCACGTAAATATTGG.................................................................................................... 20 1 2 1.50 3 0 0 2 0 0 1
.........................................................TAGCTGCACGTAAATATTGGC................................................................................................... 21 1 2 1.50 3 1 1 1 0 0 0
.........................................................TAGCAGCACGTAAATGTTGGCGT................................................................................................. 23 1 2 1.50 3 0 3 0 0 0 0
.........................................................TAGTAGCACGTAAATATTGGCGA................................................................................................. 23 2 2 1.50 3 0 0 2 0 0 1
.........................................................TAGCAGCACGTCCATATTGGCG.................................................................................................. 22 2 2 1.50 3 0 0 3 0 0 0
.........................................................AAGCAGCACGTAAATATTGGCGT................................................................................................. 23 1 2 1.50 3 1 0 1 0 0 1
.........................................................TAGCAGCACGTAAATATTA..................................................................................................... 19 1 2 1.50 3 0 0 3 0 0 0
.........................................................TAGCAGCACGGAAATATTGGCGT................................................................................................. 23 1 2 1.50 3 0 0 1 0 0 2
.........................................................TAGCAGCACGTAAATATTGA.................................................................................................... 20 1 2 1.50 3 3 0 0 0 0 0
.........................................................TAGCAGCACGTAAATATTGAC................................................................................................... 21 1 2 1.50 3 2 0 1 0 0 0
.........................................................TAGCAGCACGTAAATATTGGTGA................................................................................................. 23 2 2 1.50 3 0 1 2 0 0 0
.........................................................TAGCAGCACGTAAATATCGGCGA................................................................................................. 23 2 2 1.50 3 0 1 2 0 0 0
.........................................................TAGCGGCACGTAAATATTGGC................................................................................................... 21 1 2 1.50 3 2 1 0 0 0 0
......................................................ATTTAGCAGCACGTAAATATTGG.................................................................................................... 23 2 2 1.50 3 1 2 0 0 0 0
.........................................................TAGCAGCACGTAAATCTTGGCGT................................................................................................. 23 1 2 1.50 3 0 0 1 0 0 2
.........................................................TAGCAGCACGTACATATTGGCA.................................................................................................. 22 2 2 1.50 3 0 0 2 0 0 1
.........................................................TAGCAGCACGTAATTATTGGCGT................................................................................................. 23 1 2 1.50 3 0 1 2 0 0 0
.........................................................TATCAGCACGTAAATATTGGC................................................................................................... 21 1 2 1.50 3 0 1 1 1 0 0
..........................................................AGCAGCACGTAAATATTGG.................................................................................................... 19 0 2 1.50 3 0 1 0 0 0 2
.........................................................TAGCAGCACGTAACTATTGGC................................................................................................... 21 1 2 1.50 3 0 0 3 0 0 0
.........................................................TAGCAGCACGTAAATATGGGCG.................................................................................................. 22 1 2 1.50 3 2 0 1 0 0 0
.........................................................TAGCAGCACGTAAAAATTGGCGA................................................................................................. 23 2 2 1.50 3 0 0 3 0 0 0
..............................................................GCACGTAAATATTGGC................................................................................................... 16 0 2 1.50 3 1 1 0 1 0 0
.........................................................TAGCAGCACGTAAATATTGT.................................................................................................... 20 1 2 1.50 3 1 0 2 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTAAGC............................................................................................. 27 3 2 1.50 3 0 0 0 0 0 3
.........................................................TAGCAGCACGTAAAAATTGGCGT................................................................................................. 23 1 2 1.50 3 0 0 2 0 0 1
.........................................................TAGCAGGACGTAAATATTGGCG.................................................................................................. 22 1 2 1.50 3 2 0 1 0 0 0
.........................................................TAGCATCACGTAAATATTGG.................................................................................................... 20 1 2 1.50 3 0 0 3 0 0 0
.........................................................TAGCAGCACGCAAATATTGGC................................................................................................... 21 1 2 1.50 3 1 1 0 0 0 1
.........................................................TAGCAGCCCGTAAATATTGGC................................................................................................... 21 1 2 1.50 3 1 1 1 0 0 0
.........................................................TAGCATCACGTAAATATTGGC................................................................................................... 21 1 2 1.50 3 1 1 0 0 0 1
.........................................................TAGCAACACGTAAATATTGGCGA................................................................................................. 23 2 2 1.50 3 0 3 0 0 0 0
.........................................................TCGCAGCACGTAAATATTGGCGT................................................................................................. 23 1 2 1.50 3 0 0 3 0 0 0
.........................................................TAGCAGCACGTAAGTATTGGC................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0
.........................................................TAGCAGCACGTAAATATTGGAAA................................................................................................. 23 3 6 1.33 8 4 1 1 1 1 0
.........................................................TAGCAACACGTAAATATTGGCGT................................................................................................. 23 1 2 1.00 2 1 0 1 0 0 0
..............................................................GCACGTAAATATTGGCGTAGCAA............................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1
...................................................CCGATCTAGCAGCACGTAAATATTGGCG.................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAGCGGCACGTAAATATTGGCGTAGTAAA........................................................................................... 29 1 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACGTCAATATTGG.................................................................................................... 20 1 2 1.00 2 0 0 2 0 0 0
.......................................................................TATTGGCGTAGTAAAATAAATATTAAACACC........................................................................... 31 0 1 1.00 1 0 0 0 0 1 0
.........................................................CAGCAGCACGTAAATATTGGCA.................................................................................................. 22 2 2 1.00 2 1 0 1 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCAG................................................................................................. 23 2 2 1.00 2 0 0 1 1 0 0
........................................................CTAGCAGCACGTAAATACTGGCG.................................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................TAGCAGCACGTAGATATTGGCGT................................................................................................. 23 1 2 1.00 2 1 0 0 0 0 1
.........................................................TAGCAGCTCGTAAATATTGGCGA................................................................................................. 23 2 2 1.00 2 1 0 1 0 0 0
.........................................................TAGCAGCACGTAAATATTAACG.................................................................................................. 22 2 2 1.00 2 1 1 0 0 0 0
.....................................................GATCTAGCAGCACGTAAATATTGGCG.................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACTTAAATATTGGC................................................................................................... 21 1 2 1.00 2 1 1 0 0 0 0
......................................................AGCTAGCAGCACGTAAATATTGGCG.................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
.......................................................AATAGCAGCACGTAAATATTGGCG.................................................................................................. 24 2 2 1.00 2 2 0 0 0 0 0
....................................................................................................CCAATATTATTGTGCTGCTTTAA...................................................... 23 1 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACGTGAATATTGGC................................................................................................... 21 1 2 1.00 2 0 1 1 0 0 0
............................................................AAGCACGTAAATATTGGCG.................................................................................................. 19 1 2 1.00 2 0 2 0 0 0 0
.........................................................TAGCAGGACGTAAATATTGGC................................................................................................... 21 1 2 1.00 2 1 0 1 0 0 0
.........................................................TAGCAGCACGTCAATATTGGCAA................................................................................................. 23 3 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCAGCACGTAAATATTGCCGA................................................................................................. 23 2 2 1.00 2 0 0 2 0 0 0
..........................................................AGCAGCACGTAAATATTGGCA.................................................................................................. 21 1 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTGGAAT............................................................................................ 28 3 1 1.00 1 0 0 0 1 0 0
......................................................CAATAGCAGCACGTAAATATTGGCG.................................................................................................. 25 2 2 1.00 2 2 0 0 0 0 0
.........................................................TAGCCGCACGTAAATATTGGC................................................................................................... 21 1 2 1.00 2 0 0 1 0 1 0
.........................................................TATCAGCACGTAAATATTGGCGT................................................................................................. 23 1 2 1.00 2 0 0 1 0 0 1
.........................................................TAGCAGTACGTAAATATTGGCGA................................................................................................. 23 2 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCCGCACGTAAATATTGG.................................................................................................... 20 1 2 1.00 2 0 0 2 0 0 0
......................................................GGCTAGCAGCACGTAAATATTGGCG.................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
.........................................................TAGCAGCAGGTAAATATTGGCGT................................................................................................. 23 1 2 1.00 2 0 0 1 0 0 1
..............................................................GCACGTAAATATTGGCGTA................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
....................................TCTGACATACTTGTTCCGC.......................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAGCAGCACGTACATATTGG.................................................................................................... 20 1 2 1.00 2 1 0 0 0 0 1
.........................................................TAGCAGCACGTAAATATTGGCGTAGTAAT........................................................................................... 29 1 1 1.00 1 0 0 0 0 0 1
....................................................................................................CCAATATTATTGCGCTGCTTT........................................................ 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................AGGCAGCACGTAAATATTGGCG.................................................................................................. 22 2 2 1.00 2 1 1 0 0 0 0
.........................................................TAGCAGCACGTAAATATTGACGT................................................................................................. 23 1 2 1.00 2 0 1 1 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGCA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAGCAGCACGTGAATATTGGCGT................................................................................................. 23 1 2 1.00 2 0 0 1 0 0 1
.........................................................TAGCAGCACCTAAATATTGGCGT................................................................................................. 23 1 2 1.00 2 1 0 1 0 0 0
......................................................CACTAGCAGCACGTAAATATTGGCG.................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTAGTGT............................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0
.........................................................TACCAGCACGTAAATATTGGCGT................................................................................................. 23 1 2 1.00 2 0 1 0 0 0 1
.........................................................TAGCAGCACGTAAATATTGGCGAG................................................................................................ 24 2 2 1.00 2 1 0 0 1 0 0
.........................................................TAGCAGCACGTAAATATTGACGA................................................................................................. 23 2 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCAGCACGTAAATACTGGCGT................................................................................................. 23 1 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCAGCACGTCAATATTGGC................................................................................................... 21 1 2 1.00 2 1 0 1 0 0 0
........................................................CTAGCAGCACGTAAATATTGGA................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................AGCAGCACGTAAATATTGGCGAA................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
...................................................................................................ACCAATATTATTGTGTTGCTTT........................................................ 22 1 2 1.00 2 0 0 1 0 0 1
.........................................................TAGCAGCACGTAAATATTGGCGTGGAA............................................................................................. 27 2 1 1.00 1 0 0 0 0 1 0
......................................................TTATAGCAGCACGTAAATATTGGC................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................TAGCAGCACGTAAAGATTGGCG.................................................................................................. 22 1 2 1.00 2 0 0 1 0 0 1
.........................................................TAGCAGCACGAAAATATTGGCGT................................................................................................. 23 1 2 1.00 2 0 2 0 0 0 0
............................................................CAGCACGTAAATATTGGCGTAG............................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
.......................................................ACTAGCAGCACGTAAATATTGGCG.................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAGCGGCACGTAAATATTG..................................................................................................... 19 1 2 1.00 2 0 0 2 0 0 0
.................................................TGGCGCTGTAGCAGCACGTAAATATTGGCGT................................................................................................. 31 3 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACGTACCTATTGGCG.................................................................................................. 22 2 2 1.00 2 0 0 1 0 0 1
........................................................CTAGCAGCCCGTAAATATTGGCGA................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACGTAAATATTAGC................................................................................................... 21 1 2 1.00 2 1 1 0 0 0 0
........................................................CTAGCAGCACGTAAATATTGG.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.........................................................TAGCAGCACGTAAATCTTGG.................................................................................................... 20 1 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCAGCACGTATATATTGGCGTAGTAAA........................................................................................... 29 1 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCCCGTAAATATTGGCGA................................................................................................. 23 2 2 1.00 2 0 0 1 0 0 1
...........................................................GCAGCACCTAAATATTGGCGA................................................................................................. 21 2 2 1.00 2 2 0 0 0 0 0
...................................................................................................ACCAATATTACTGTGCTGCTT......................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................CGTAAATATTGGCGTAGCAGCA.......................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACGTAACTATTGG.................................................................................................... 20 1 2 1.00 2 0 0 2 0 0 0
.........................................................TAGCAGCACGTAAATATTGGCGTAGAA............................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.........................................................TAGCAGCGCGTAAATATTGGC................................................................................................... 21 1 2 1.00 2 1 0 1 0 0 0
.........................................................TAGCAGCACGTCAATATTGGCGTAT............................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................GCGTGACAGGGATATAG...................................... 17 0 1 1.00 1 0 0 1 0 0 0
.........................................................TAGCATCACGTAAATATTGGCA.................................................................................................. 22 2 2 1.00 2 0 0 2 0 0 0
.................................................................CGTAAATATTGGCGTAGCA............................................................................................. 19 1 1 1.00 1 0 0 0 0 0 1
......................................TGACATACTTGTTCCGCTC........................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.........................................................TAGCAGCACGTAAATAATGGC................................................................................................... 21 1 2 1.00 2 1 1 0 0 0 0
.........................................................TAGCAGCACGTACATATTGGCGTAGTAA............................................................................................ 28 1 1 1.00 1 0 0 0 0 0 1
.........................................................TAGCAGCACGTAAATATTGGCAAA................................................................................................ 24 2 1 1.00 1 0 0 0 0 0 1
...........................................................GCAGCACGTAAATATTGGCAT................................................................................................. 21 1 2 1.00 2 0 0 2 0 0 0
........................................................CTAGCAGCACGTAAATATTGGCA.................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................TAGCAGCACGTAAATGTTGGCGA................................................................................................. 23 2 2 1.00 2 0 1 1 0 0 0
.........................................................CAGCAGCACGTACATATTGGCG.................................................................................................. 22 2 2 1.00 2 1 0 1 0 0 0
.........................................................TAGCAGCACGTACATATTGGC................................................................................................... 21 1 2 1.00 2 0 0 1 0 1 0
.........................................................TAGCAGCACGTAAATATTGGTGTAGT.............................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CCAATATTATTGTGCTGCTT......................................................... 20 0 1 1.00 1 0 0 0 0 1 0

Anti-sense strand reads

AAAAGTAGTAGTACACAATTAAAAGACAAATCTACCTGACTGTATGAACAAGGCGAGATCGTCGTGCATTTATAACCGCATCATTTTATTTATAATTTGTGGTTATAATAACACGACGAAATCGCACTGTCCCTATATCGTTGATAGTAAAGACAAACTTAAAAGGAAAATTCTATT

*****************************************...((((((.((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..)))).))))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:27 AM