ID:

ssc-mir-150-1

 Coordinate:

chr6:50309879-50309955 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.8 -42.4

Sense Strand Reads

AAGGAGCCCCCGGGCCGGTCCAGAGGCAGCAGCGGCAGCTTCTCTCTCCTCTCGGCCCTATCTCCCAACCCTTGTACCAGTGCGTGCCTCAGTCCCTGGTACAGGAATGGGGGGCAGGGACCTGGGGACCCCAGCAGCGCCAGGCCCCCAGGGGCGAAGTCAGCAGGGTGACTCCAG

*********************************************.(((((..((((((.(((((((..(((.(((((((.((........))..))))))))))..))))))).)))).)).)))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR1274763

ovary		 SRR066810

testes		 SRR139076

testes		 SRR1274764

testes
............................................................TCTCCCAACCCTTGTACCAGTG............................................................................................... 22 0 1 564.00 564 308 121 68 35 27 5
............................................................TCTCCCAACCCTTGTACCAGT................................................................................................ 21 0 1 121.00 121 35 44 14 22 6 0
............................................................TCTCCCAACCCTTGTACCAGTGA.............................................................................................. 23 1 1 74.00 74 36 16 18 1 2 1
............................................................TCTCCCAACCCTTGTACCAGTGT.............................................................................................. 23 1 1 58.00 58 27 10 12 4 3 2
...............................................................................................CTGGTACAGGAATGGGGGGCA............................................................. 21 0 1 11.00 11 11 0 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAG................................................................................................. 20 0 1 11.00 11 5 2 3 1 0 0
................................................................CCAACCCTTGTACCAGTG............................................................................................... 18 0 1 7.00 7 2 5 0 0 0 0
.............................................................CTCCCAACCCTTGTACCAGT................................................................................................ 20 0 1 5.00 5 0 2 0 3 0 0
............................................................TCTCCCAACCCTTGTACCAGTA............................................................................................... 22 1 1 5.00 5 2 1 0 1 1 0
............................................................TCTTCCAACCCTTGTACCAGTG............................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...............................................................................................CTGGTACAGGAATGGGGGGCATT........................................................... 23 2 1 3.00 3 3 0 0 0 0 0
............................................................TTTCCCAACCCTTGTACCAGTG............................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
............................................................TCTCCCAACCTTTGTACCAGTG............................................................................................... 22 1 1 3.00 3 2 0 0 0 1 0
............................................................TCTTCCAACCCTTGTACCAGT................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0
............................................................TCTCTCAACCCTTGTACCAGTG............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................CTGGTACAGGAATGGGGGGCAT............................................................ 22 1 1 2.00 2 2 0 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAGCG............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................CCTCCCAACCCTTGTACCAGT................................................................................................ 21 1 1 2.00 2 0 0 0 1 1 0
............................................................TCTCCCAACCCTTGTACCA.................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAGTGC.............................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0
..........................................................TATCTCCCAACCCTTGTACCAGT................................................................................................ 23 0 1 2.00 2 1 1 0 0 0 0
............................................................TCTCCCCACCCTTGTACCAGTG............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................TGTCTCCCAACCCTTGTACCAGT................................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0
............................................................CCTCCCAACCCTTGTACCAGTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTGTACCACGGT.............................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTATACCAGT................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
............................................................TCTCCTAACCCTTGTACCAGTGT.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCGAACCCTTGTACCAGTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................CCAACCCTTGTACCAGT................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0
............................................................TCTCCCAACCATTGTACCAGTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................TCCCAACCCTTGTACCAGTG............................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAGTGG.............................................................................................. 23 1 1 1.00 1 0 0 0 0 0 1
............................................................TCTCCCAACCCTTGTACCAGGG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................TCTCTCAACCCTTGTACCAGTGA.............................................................................................. 23 2 2 1.00 2 1 0 0 0 1 0
..............................................................................................CCTGGTACAGGAATGGGGGGCAGT........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTGGACCAGTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................TATCTCCCAACCCTTGTACCAGTGT.............................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
..............................................................TCCCAACCCTTGTACCAGTGA.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTGTGCCAGTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTGGTACAGGAATGGGGGGCATTT.......................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................CCTGGTACAGGAATGGGGGGCAT............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................................................................CCAACCCTCGTACCAGTG............................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0
............................................................TCTCCCAACCCTTGTACCATTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCATCCCTTGTACCAGTG............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAGTGAAA............................................................................................ 25 3 1 1.00 1 0 0 1 0 0 0
................................................................................................TGGTACAGGAATGGGGGGCA............................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................CCTGGTACAGGAATGGGGGGCATT........................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................ATTTCTCCCAACCCTTGTACCAGTG............................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAGTT............................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CTGGTACAGGAATGGGGGGCAAT........................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................TCTCCCAACCCTTGTATCAGTGT.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTGGTACAGGAATGGGGG................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
............................................................TCTCCCAACCCTTGTACCAGTTT.............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................TTTCCCAACCCTTGTACCAGT................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..............................................................TTCCAACCCTTGTACCAGTG............................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
............................................................TCTCCCAATTCTTGTACCAGTG............................................................................................... 22 2 2 0.50 1 0 0 0 0 1 0
................................................................CCAACCCTTGTACCAGTGT.............................................................................................. 19 1 2 0.50 1 0 1 0 0 0 0
.............................................................CTCCCAACCCTTGCACCAGTG............................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
................................................................................................TGGTACAGGAATGGGGGGCAT............................................................ 21 1 3 0.33 1 1 0 0 0 0 0
................................................................CCAACCCTTGTACCGGTGT.............................................................................................. 19 2 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................GGGACTGGGGACCCCAGCAGCGG..................................... 23 3 13 0.08 1 0 0 0 1 0 0

Anti-sense strand reads

TTCCTCGGGGGCCCGGCCAGGTCTCCGTCGTCGCCGTCGAAGAGAGAGGAGAGCCGGGATAGAGGGTTGGGAACATGGTCACGCACGGAGTCAGGGACCATGTCCTTACCCCCCGTCCCTGGACCCCTGGGGTCGTCGCGGTCCGGGGGTCCCCGCTTCAGTCGTCCCACTGAGGTC

**********************************************.(((((..((((((.(((((((..(((.(((((((.((........))..))))))))))..))))))).)))).)).)))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes
...........................................................CAGAGGGTTGGGAACATGGTCA................................................................................................ 22 1 1 24.00 24 11 13 0
............................................................AGAGGGTTGGGAACATGGTCA................................................................................................ 21 0 1 15.00 15 8 7 0
..........................................................ACAGAGGGTTGGGAACATGGTCA................................................................................................ 23 1 1 5.00 5 3 2 0
..........................................................TCAGAGGGTTGGGAACATGGTCA................................................................................................ 23 2 1 2.00 2 1 1 0
..........................................................TAAGAGGGTTGGGAACATGGTCA................................................................................................ 23 2 1 1.00 1 1 0 0
...........................................................AAGAGGGTTGGGAACATGGTCA................................................................................................ 22 1 1 1.00 1 0 1 0
...........................................................CAGAGGGTGGGGAACATGGTCA................................................................................................ 22 2 1 1.00 1 0 1 0
...........................................................TAGAGGGTTGGGAACATGGTCA................................................................................................ 22 0 1 1.00 1 1 0 0
.............................................................AAGGGTTGGGAACATGGTCA................................................................................................ 20 1 1 1.00 1 0 1 0
.............................................................GAGGGTTGGGAACATGGTCA................................................................................................ 20 0 1 1.00 1 1 0 0
...........................................................CAGAGGGTTGGGAACATGGTCACG.............................................................................................. 24 1 1 1.00 1 0 1 0
............................................................AGAGGGTTGGGAACATGGTCACG.............................................................................................. 23 0 1 1.00 1 1 0 0
...............................................................GGGTTGGGAACATGGTCA................................................................................................ 18 0 1 1.00 1 1 0 0
....................................................................................ACGGAGTCAGGGACCATG........................................................................... 18 0 1 1.00 1 0 0 1
.............................................................................................GGGACCATGTCCGGACCCCCC............................................................... 21 2 12 0.17 2 2 0 0
..............................................................................................TGACCATGTCCGGACCCCCCGTC............................................................ 23 3 7 0.14 1 1 0 0
..................................................................TTGGGAACATGGTCA................................................................................................ 15 0 8 0.13 1 0 1 0
................................................................................................ACCATGTCCGGACCCCCCGTC............................................................ 21 2 8 0.13 1 0 1 0
....................................................................................ACGGAGTCAGGGACC.............................................................................. 15 0 15 0.07 1 1 0 0

Generated: 09/01/2015 at 11:38 AM