ID:

ssc-mir-146a

 Coordinate:

chr16:68394520-68394597 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.1 -34.9 -34.8
mature

  1. ssc-mir-146a  chr16:68394566-68394587 -
  2. ssc-mir-146a  chr16:68488139-68488160 +
star

Sense Strand Reads

TGGACCGAGAGGAGGGGGGCTTTGTGCCAACTCTGGAAGGCCTATGTGTATACTCAGCTTTGAGAACTGAATTCCATGGGTTGTGTCATTGTCAGACCTGTGAAGTTTAGTTCTTCAGCTGGGATATCTCTATCATCATGGACTCGAGGGACATCGGAGAGAGCAGATCCAAGGTCGG

***********************************......(((((((.((((((((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).))))))).......))))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR1274764

testes		 SRR1274763

ovary		 SRR139075

testes		 SRR066810

testes		 SRR139076

testes
............................................................TGAGAACTGAATTCCATGGGTT................................................................................................ 22 0 2 990.50 1981 595 446 593 125 159 63
............................................................TGAGAACTGAATTCCATGGGTTA............................................................................................... 23 1 2 299.00 598 77 175 117 146 16 67
............................................................TGAGAACTGAATTCCATGGGTTT............................................................................................... 23 1 2 264.00 528 124 150 118 68 28 40
............................................................TGAGAACTGAATTCCATGGGT................................................................................................. 21 0 2 126.50 253 109 49 37 17 32 9
............................................................TGAGAACTGAATTCCATGGGTAA............................................................................................... 23 2 2 97.00 194 5 108 48 11 1 21
............................................................TGAGAACTGAATTCCATGGGTTAT.............................................................................................. 24 1 2 67.50 135 10 37 20 52 0 16
............................................................TGAGAACTGAATTCCATGGGTTAA.............................................................................................. 24 2 4 50.50 202 9 82 65 23 3 20
...........................................................TTGAGAACTGAATTCCATGGGT................................................................................................. 22 0 2 49.00 98 75 4 18 0 1 0
............................................................TGAGAACTGAATTCCATGGGTAT............................................................................................... 23 2 2 41.50 83 5 26 3 27 3 19
............................................................TGAGAACTGAATTCCATGGGTTG............................................................................................... 23 0 2 33.50 67 21 18 12 7 8 1
...........................................................TTGAGAACTGAATTCCATGGGTT................................................................................................ 23 0 2 30.50 61 41 1 12 2 5 0
............................................................TGAGAACTGAATTCCATGGGTTTT.............................................................................................. 24 1 2 23.50 47 8 10 5 15 5 4
............................................................TGAGAACTGAATTCCATGGGTTTA.............................................................................................. 24 2 2 22.00 44 1 12 5 19 2 5
............................................................TGAGAACTGAATTCCATGGGTA................................................................................................ 22 1 2 15.50 31 6 6 9 1 4 5
............................................................TGAGAACTGAATTCCATGGGTTGA.............................................................................................. 24 1 2 12.50 25 4 4 11 3 2 1
............................................................TGAGAACTGAATTCCATGGGAA................................................................................................ 22 2 6 9.17 55 5 37 10 0 2 1
............................................................TGAGAACTGAATTCCATGGGTTAG.............................................................................................. 24 2 2 8.50 17 2 5 4 4 2 0
............................................................TGAGAACTGAATTCCATGGGTTGT.............................................................................................. 24 0 2 8.00 16 5 4 5 1 1 0
............................................................TGAGAACTGAATTCCATGGGCTGT.............................................................................................. 24 1 3 8.00 24 15 0 0 0 9 0
............................................................TGAGAACTGAATTCCATGGGTAG............................................................................................... 23 1 2 4.50 9 1 4 2 2 0 0
............................................................TGAGAACTGAATTCCATGGG.................................................................................................. 20 0 2 4.50 9 0 3 4 2 0 0
............................................................TGAGAACTGAATTCCATGGGA................................................................................................. 21 1 3 4.33 13 3 4 4 1 1 0
.............................................................GAGAACTGAATTCCATGGGTTT............................................................................................... 22 1 2 4.00 8 3 1 0 1 0 3
...........................................................TTGAGAACTGAATTCCATGGGTTT............................................................................................... 24 1 2 4.00 8 6 1 1 0 0 0
.............................................................GAGAACTGAATTCCATGGGTT................................................................................................ 21 0 2 4.00 8 3 0 4 0 0 1
............................................................TGAGAACTGAATTCCATAGGT................................................................................................. 21 1 3 3.67 11 6 0 0 0 5 0
.............................................................GAGAACTGAATTCCATGGGTTA............................................................................................... 22 1 2 3.50 7 1 0 0 5 0 1
............................................................TGAGAACTGAATTCCATGGGAT................................................................................................ 22 1 2 3.50 7 4 1 0 1 1 0
............................................................TGAGAACTGAATTCCATGG................................................................................................... 19 0 2 3.50 7 3 1 0 1 2 0
............................................................TGAGAACTGAATTCCATAGGTTGT.............................................................................................. 24 1 3 3.00 9 3 0 0 1 5 0
............................................................TGAGAACTGAATTCCATGGGTTTAA............................................................................................. 25 3 2 2.50 5 1 1 2 1 0 0
............................................................TGAGAACTGAATTCCATGGGTAAT.............................................................................................. 24 2 2 2.50 5 0 1 2 2 0 0
...........................................................TTGAGAACTGAATTCCATGGGTAT............................................................................................... 24 2 2 2.50 5 3 0 2 0 0 0
...........................................................TTGAGAACTGAATTCCATGGGTTA............................................................................................... 24 1 2 2.00 4 3 0 1 0 0 0
...........................................................CTGAGAACTGAATTCCATGGGTT................................................................................................ 23 1 2 2.00 4 3 0 0 0 0 1
...........................................................TTGAGAACTGAATTCCATGGGA................................................................................................. 22 1 2 2.00 4 2 1 1 0 0 0
...........................................................TTGAGAACTGAATTCCATGGGTA................................................................................................ 23 1 2 2.00 4 1 0 1 2 0 0
............................................................TGAGAACTGAATTCCATGGGTAGA.............................................................................................. 24 2 2 2.00 4 1 2 1 0 0 0
............................................................TGAGAACTGAATTCCATGGGCT................................................................................................ 22 1 3 2.00 6 1 0 2 1 2 0
............................................................TGAGAACTGAATTCCATGGGTTAAA............................................................................................. 25 3 5 1.80 9 0 5 4 0 0 0
..............................................................AGAACTGAATTCCATGGGTT................................................................................................ 20 0 2 1.50 3 2 0 0 0 1 0
...........................................................TTGAGAACTGAATTCCATGG................................................................................................... 20 0 2 1.50 3 2 0 0 1 0 0
.............................................................GAGAACTGAATTCCATGGGT................................................................................................. 20 0 2 1.50 3 1 1 0 0 1 0
............................................................TGAGAACTGAATTCTATGGGTT................................................................................................ 22 1 2 1.50 3 2 1 0 0 0 0
............................................................TGAGAACTGACTTCCATGGGTT................................................................................................ 22 1 2 1.50 3 1 0 1 0 0 1
............................................................TGAGAACTGAATTCCATGGGCTT............................................................................................... 23 2 3 1.33 4 1 1 0 0 0 2
............................................................TGAGAACTGAATTCCA...................................................................................................... 16 0 8 1.13 9 2 2 3 2 0 0
............................................................TGAGAACTGAATTCCATGGGTGA............................................................................................... 23 2 4 1.00 4 1 1 2 0 0 0
............................................................TGAGAACTGAATTCCATGGGTGT............................................................................................... 23 2 3 1.00 3 0 2 0 0 0 1
...........................................................TTGAGAACTGAATTCCATGGG.................................................................................................. 21 0 2 1.00 2 0 2 0 0 0 0
............................................................TGAGAACTGAATTCCATGGTTT................................................................................................ 22 1 2 1.00 2 1 0 0 1 0 0
..........................................................CTTGAGAACTGAATTCCATGGGT................................................................................................. 23 1 2 1.00 2 2 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTGAGA............................................................................................ 26 2 2 1.00 2 2 0 0 0 0 0
............................................................TGAGAACTGAATTTCATGGGTT................................................................................................ 22 1 2 1.00 2 0 0 1 0 0 1
............................................................TGAGAACTGAATTCCATGGGTATT.............................................................................................. 24 2 2 1.00 2 0 0 0 1 0 1
............................................................CGAGAACTGAATTCCATGGGTTAT.............................................................................................. 24 2 2 1.00 2 0 0 0 2 0 0
............................................................TGAGAACTGAATTTCATGGGTTA............................................................................................... 23 2 4 0.75 3 0 0 0 2 0 1
............................................................TGAGAACTGAATTCCATGGGTATA.............................................................................................. 24 3 4 0.75 3 0 0 0 2 0 1
...........................................................TTGAGAACTGAATTCCATGGGAA................................................................................................ 23 2 3 0.67 2 0 1 1 0 0 0
............................................................TGAGAACTGAATTCCATAGGTTG............................................................................................... 23 1 3 0.67 2 1 0 0 1 0 0
............................................................TGAGAACTGAATTCCATGGACT................................................................................................ 22 2 3 0.67 2 2 0 0 0 0 0
............................................................TGAGAACTGAATTCCATAGGTT................................................................................................ 22 1 3 0.67 2 2 0 0 0 0 0
............................................................TGAGAACTGAGTTCCATGGGTTA............................................................................................... 23 2 3 0.67 2 0 0 0 1 0 1
............................................................TGAGAACTGAATTCCATGGGTAAA.............................................................................................. 24 3 9 0.56 5 0 3 2 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTATT............................................................................................. 25 2 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATCCCATGGGTTAT.............................................................................................. 24 2 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATGGGTTAC.............................................................................................. 24 2 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCACGGGTTT............................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
............................................................TGAGAACTGAATTCCATGGTTTT............................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTTCATGGGT................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTGC.............................................................................................. 24 1 2 0.50 1 0 0 0 1 0 0
.............................................................GAGAACTGAATTCCATGGGTAGA.............................................................................................. 23 2 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCAGGGGTT................................................................................................ 22 1 2 0.50 1 0 0 0 0 1 0
............................................................TGAGAGCTGAATTCCATGGGTT................................................................................................ 22 1 2 0.50 1 0 0 0 1 0 0
.............................................................GAGAACTAAATTCCATGGGTTA............................................................................................... 22 2 2 0.50 1 0 0 0 1 0 0
............................................................TGAGGACTGAATTCCATGGGTTG............................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATGGGTTAGT............................................................................................. 25 3 4 0.50 2 0 1 1 0 0 0
...........................................................TTGAGAACCGAATTCCATGGGT................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATGGA.................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTAAATTCCATGGGTTT............................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTGTATT........................................................................................... 27 2 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAGCTGAATTCCATGGGTTA............................................................................................... 23 2 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATGGGTTC............................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0
..............................................................AGAACTGAATTCCATGGGT................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCACGGGTT................................................................................................ 22 1 2 0.50 1 0 0 0 0 0 1
...........................................................TTGAGAACTGAATTCCATGGGGT................................................................................................ 23 1 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATCGGTT................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
............................................................CGAGAACTGAATTCCATGGGTTA............................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.............................................................GAGAACTGAATTCCATGGGTAT............................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
...........................................................TTGAGAACTGAATTCCATGGGTAA............................................................................................... 24 2 2 0.50 1 0 0 1 0 0 0
............................................................TGAGGACTGAATTCCATGGGT................................................................................................. 21 1 4 0.50 2 1 0 0 0 1 0
............................................................TGAGAACTGAATTCCATGGGTTGTGT............................................................................................ 26 0 2 0.50 1 0 0 0 0 1 0
............................................................TGAGAACTGAATTCCATGGGTG................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
............................................................AGAGAACTGAATTCCATGGGT................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCGTGGGTT................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGATTGT.............................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATCCCATGGGTTT............................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
...........................................................TTGAGAACTGAATTCTATGGGT................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
...........................................................CTGAGAACTGAATTCCATGGGTTG............................................................................................... 24 1 2 0.50 1 0 0 0 0 1 0
.........................................................ATTTGAGAACTGAATTCCATGGGTT................................................................................................ 25 1 2 0.50 1 1 0 0 0 0 0
.........................................................TTATGAGAACTGAATTCCATGGGTTT............................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTTAATTCCATGGGTTT............................................................................................... 23 2 2 0.50 1 0 0 0 0 0 1
............................................................CGAGAACTGAATTCCATGGGTA................................................................................................ 22 2 2 0.50 1 0 0 0 0 0 1
............................................................TGAGCACTGAATTCCATGGGTA................................................................................................ 22 2 2 0.50 1 0 0 0 1 0 0
............................................................TGAGACCTGAATTCCATGGGTTA............................................................................................... 23 2 2 0.50 1 0 0 0 0 0 1
............................................................TGAGAACTGAATTCCATGGGTTCA.............................................................................................. 24 2 2 0.50 1 0 0 1 0 0 0
..............................................................AGAACTGAATTCCATGGGTTA............................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0
...........................................................TTGAGAACTGAATTCCATGGGTTG............................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0
...........................................................CTGAGAACTGAATTCCATGGGT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTTTTT............................................................................................ 26 2 2 0.50 1 0 0 0 1 0 0
............................................................TGGGAACTGAATTCCATGGGTTA............................................................................................... 23 2 2 0.50 1 0 0 0 1 0 0
............................................................TGATAACTGAATTCCATGGGTT................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..........................................................GTTGAGAACTGAATTCCATGGGTT................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0
............................................................TGGGAACTGAATTCCATGGGTT................................................................................................ 22 1 2 0.50 1 0 0 0 0 1 0
............................................................TGAGAACTGAATTCCATGGGATA............................................................................................... 23 2 2 0.50 1 0 0 0 1 0 0
.............................................................GAGAACTGAATTCCATGGGTTAT.............................................................................................. 23 1 2 0.50 1 0 0 0 1 0 0
............................................................TGAGAACTGAGTTCCATGGGTTT............................................................................................... 23 2 2 0.50 1 0 0 0 0 1 0
............................................................TGAGAACTGAATTCCATGGCTTA............................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTGG.............................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0
............................................................TCAGAACTGAATTCCATGGGT................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACCGAATTCCATGGGTT................................................................................................ 22 1 2 0.50 1 0 0 0 0 1 0
............................................................TGAGAACTGAATTCCATGGGTTAGA............................................................................................. 25 3 4 0.50 2 0 2 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTGAA............................................................................................. 25 2 2 0.50 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTGG............................................................................................... 23 1 2 0.50 1 0 0 1 0 0 0
............................................................TGAGAACTGAATTCTATGGGT................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTAC............................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
............................................................TGAGAACTGAATTCCATGGGTACA.............................................................................................. 24 3 5 0.40 2 0 0 0 2 0 0
............................................................TGAGAACTGAATTCCATGGACTG............................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGACTGT.............................................................................................. 24 2 3 0.33 1 1 0 0 0 0 0
.................................................................ACTGAATTCCATGGGTT................................................................................................ 17 0 3 0.33 1 1 0 0 0 0 0
...........................................................TTGAGAACTGAATTCCATGGGAAG............................................................................................... 24 2 3 0.33 1 0 0 0 0 1 0
............................................................TGAGAACTGGATTCCATGGGTTA............................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0
............................................................TAAGAACTGAATTCCATGGGTTT............................................................................................... 23 2 3 0.33 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATAGGTCG............................................................................................... 23 2 3 0.33 1 0 0 0 0 1 0
............................................................TAAGAACTGAATTCCATGGGTT................................................................................................ 22 1 3 0.33 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGCTG............................................................................................... 23 1 3 0.33 1 0 0 0 0 1 0
............................................................TGAGAACTGAATTCCATGGGAAG............................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATG.................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0
............................................................TGAGGACTGAATTCCATGGGTT................................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGCTA............................................................................................... 23 2 4 0.25 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTGCATGGGTTT............................................................................................... 23 2 4 0.25 1 0 0 1 0 0 0
............................................................TGAGAACTGCATTCCATGGGCT................................................................................................ 22 2 4 0.25 1 0 0 0 1 0 0
............................................................TGAAAACTGAATTCCATGGGTT................................................................................................ 22 1 4 0.25 1 0 0 0 1 0 0
.............................................................GAGAACTGAATTCCATGGGTAA............................................................................................... 22 2 4 0.25 1 0 0 1 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTTGA............................................................................................. 25 3 5 0.20 1 0 0 1 0 0 0
............................................................TGAGAACTGAATTCCCTGGGTT................................................................................................ 22 1 5 0.20 1 1 0 0 0 0 0
...........................................................CTGAGAACTGAATTCCATGGGTAT............................................................................................... 24 3 5 0.20 1 0 0 0 0 0 1
............................................................TGAGAACTGAATTCCCTGGGTTT............................................................................................... 23 2 5 0.20 1 0 0 0 1 0 0
...........................................................TTGAGAACTGAATCCCATGGGTAA............................................................................................... 24 3 5 0.20 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTAAG.............................................................................................. 24 3 5 0.20 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGTTAAAT............................................................................................ 26 3 5 0.20 1 0 0 1 0 0 0
............................................................TGAGCACTGAATTCCATGGGTTA............................................................................................... 23 2 5 0.20 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATGGAA................................................................................................. 21 2 11 0.18 2 0 2 0 0 0 0
...........................................................TTGAGAACTGAATTCCATGGAA................................................................................................. 22 2 6 0.17 1 1 0 0 0 0 0
.............................................................GAGAACTGAATTCCATGGGTTAA.............................................................................................. 23 2 6 0.17 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCCATGGGTTTAT............................................................................................. 25 3 7 0.14 1 0 0 1 0 0 0
............................................................TGAGAACTGAATTCCATGGGCAT............................................................................................... 23 3 8 0.13 1 0 0 0 1 0 0
..............................................................AGAACTGAATTCCATGGGTAT............................................................................................... 21 2 8 0.13 1 0 0 0 0 0 1
.............................................................GAGAACTGAATTCCATGGGTTAAA............................................................................................. 24 3 8 0.13 1 0 0 0 0 0 1
............................................................TGAGAACTGAATTCAATGGGTAT............................................................................................... 23 3 10 0.10 1 1 0 0 0 0 0
............................................................TGAGAACTGAATTCTATGGGTAT............................................................................................... 23 3 10 0.10 1 0 0 0 1 0 0
............................................................TGAGAACTGAATTCC....................................................................................................... 15 0 17 0.06 1 0 1 0 0 0 0
............................................................TGAGAACTGAATTCCATGGGGAA............................................................................................... 23 3 18 0.06 1 0 1 0 0 0 0
............................................................TGAGGACTGAATTCCATGGGAA................................................................................................ 22 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

ACCTGGCTCTCCTCCCCCCGAAACACGGTTGAGACCTTCCGGATACACATATGAGTCGAAACTCTTGACTTAAGGTACCCAACACAGTAACAGTCTGGACACTTCAAATCAAGAAGTCGACCCTATAGAGATAGTAGTACCTGAGCTCCCTGTAGCCTCTCTCGTCTAGGTTCCAGCC

***********************************......(((((((.((((((((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).))))))).......))))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:30 AM