ID:

ssc-mir-1468

 Coordinate:

chrX:56757045-56757127 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.7 -37.7 -37.6

Sense Strand Reads

AAAGTGCAGCCTTGGTTGAATTGCCCAGAGTTAGGGGCATCATGAAGAGGTGGGTGGTTTCTCCGTTTGCCTGTTTTGCTGACGTTCATTTGACTCATTCTCAGCAAAATAAGCAAATGGAAAATTCATCCATCAAAAAGCTACCTTTTATATTCCTAAGGGTGTGAAGAAGAATTCTTAGGG

***********************************.............(((((((((.((.(((((((((.(((((((((((..................))))))))))).))))))))).)).)))))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274763

ovary		 SRR1274764

testes		 SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR139076

testes
............................................................CTCCGTTTGCCTGTTTTGCTGA..................................................................................................... 22 0 1 1674.00 1674 724 412 217 218 66 37
............................................................CTCCGTTTGCCTGTTTTGCTG...................................................................................................... 21 0 1 250.00 250 74 49 70 38 15 4
............................................................CTCCGTTTGCCTGTTTTGCT....................................................................................................... 20 0 1 190.00 190 26 25 61 35 32 11
............................................................CTCCGTTTGCCTGTTTTGCTGAA.................................................................................................... 23 1 1 145.00 145 51 33 7 46 1 7
............................................................CTCCGTTTGCCTGTTTTGCTGT..................................................................................................... 22 1 1 45.00 45 6 6 18 8 7 0
............................................................CTCCGTTTGCCTGTTTTGCTA...................................................................................................... 21 1 1 45.00 45 1 30 6 1 5 2
............................................................CTCCGTTTGCCTGTTTTGC........................................................................................................ 19 0 1 26.00 26 6 3 7 6 2 2
............................................................CTCCGTTTGCCTGTTTTGCTGAAA................................................................................................... 24 2 1 7.00 7 4 2 0 1 0 0
............................................................CTCCGTTTGCCTGTTTTGCA....................................................................................................... 20 1 1 6.00 6 0 4 0 2 0 0
............................................................CTCCGTTTGCCTGTTTTGCTGAT.................................................................................................... 23 1 1 6.00 6 1 1 3 0 1 0
...............................................................CGTTTGCCTGTTTTGCTGA..................................................................................................... 19 0 1 6.00 6 0 1 4 0 1 0
.............................................................TCCGTTTGCCTGTTTTGCTGA..................................................................................................... 21 0 1 6.00 6 3 0 3 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTAA..................................................................................................... 22 1 1 6.00 6 2 4 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTT...................................................................................................... 21 1 1 4.00 4 1 2 1 0 0 0
............................................................CTTCGTTTGCCTGTTTTGCTGA..................................................................................................... 22 1 1 4.00 4 0 0 0 2 1 1
............................................................CTCCGTTTGCCTGTTTTGA........................................................................................................ 19 1 1 4.00 4 0 0 0 2 2 0
.............................................................TCCGTTTGCCTGTTTTGCTGAA.................................................................................................... 22 1 1 3.00 3 0 0 0 3 0 0
.............................................................TTCGTTTGCCTGTTTTGCTGAA.................................................................................................... 22 2 1 2.00 2 0 0 0 2 0 0
...............................................................CGTTTGCCTGTTTTGCTG...................................................................................................... 18 0 1 2.00 2 0 0 1 0 1 0
...............................................................CGTTTGCCTGTTTTGCTGAA.................................................................................................... 20 1 1 2.00 2 0 0 0 1 0 1
.............................................................TCCGTTTGCCTGTTTTGCTGAC.................................................................................................... 22 0 1 2.00 2 1 0 1 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTGG..................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................CTCCGTTTGCTTGTTTTGCTG...................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTAT..................................................................................................... 22 2 1 2.00 2 1 1 0 0 0 0
............................................................CTTCGTTTGCCTGTTTTGCTGT..................................................................................................... 22 2 1 2.00 2 0 0 0 2 0 0
............................................................CTCCGTTTGCCTGTTTTGCTGC..................................................................................................... 22 1 1 2.00 2 0 1 0 1 0 0
............................................................CTCCGTTTGCCTGTTTCGCTG...................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0
............................................................CTCCGTTTGCCTGTTTTGCTGAAT................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
............................................................CTCCGTTTGCCTGCTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCAG...................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................TTCCGTTTGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
............................................................CTCCGTTTGTCTGTTTTGCTGAA.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................................CGTTTGCCTGTTTTGCT....................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0
............................................................CTCCGTTCGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................CTCCGTTTGCCTGTTTCGCTGA..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTG......................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0
............................................................CTCCGTTTGCCTGCTTTGCTG...................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
............................................................CTCCGTTTGCCTGTTTTGCTGAG.................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
............................................................CTCCGGTTGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTGACG................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
.............................................................TCCGTTTGCCTGTTTTGCTG...................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
..............................................................CCGTTTGCCTGTTTTGCTG...................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0
............................................................CTCTGTTTGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
............................................................CTCCCTTTGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
............................................................CTCCGTTTGCCTTTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
............................................................CTCCGTTTGCCTGTTTTACTGA..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................CTCCGTATGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................CTCTGTTTGCCTGTTTTGCTGAA.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTTC..................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
............................................................CTCCGTTTGTCTGTTTTGCTG...................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
............................................................CTCCGTTTGCCTTTTTTGCT....................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................ATCCGTTTGCCTGTTTTGCT....................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
............................................................CTCCGTTTGCGTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
............................................................ATCCGTTTGCCTGTTTTGCTGA..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCAT...................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................TTCCGTTTGCCTGTTTTGCTG...................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
............................................................CTCCGTTTGCCTGTTTTGCTGAC.................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCAA...................................................................................................... 21 2 5 0.80 4 1 3 0 0 0 0
............................................................CTCCGTTCGCCTGTTTTGC........................................................................................................ 19 1 2 0.50 1 0 0 0 0 1 0
............................................................CTCCGTTTGCCTGTTTTTCT....................................................................................................... 20 1 2 0.50 1 0 0 0 0 0 1
............................................................CTCTGTTTGCCTGTTTTGCTGT..................................................................................................... 22 2 3 0.33 1 0 1 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTAAAA................................................................................................... 24 3 3 0.33 1 1 0 0 0 0 0
............................................................CTCCGTTTGCCTGTTT........................................................................................................... 16 0 3 0.33 1 0 1 0 0 0 0
............................................................CTCCGTTTGCCTGTT............................................................................................................ 15 0 6 0.33 2 1 0 0 0 1 0
............................................................CTCCGTTTGCCTGTTTTGAA....................................................................................................... 20 2 10 0.20 2 0 2 0 0 0 0
............................................................CTCCGTTTGCCTGTTTTGCTAGA.................................................................................................... 23 3 6 0.17 1 1 0 0 0 0 0
............................................................CTCCGTTTGCCTGCCCTGCTGA..................................................................................................... 22 3 9 0.11 1 0 0 0 1 0 0
............................................................TCCCGTTTGCCTGTTTTGCT....................................................................................................... 20 2 17 0.06 1 0 0 1 0 0 0
............................................................CTCCGTTTGCCTGTTTTGAAAA..................................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TTTCACGTCGGAACCAACTTAACGGGTCTCAATCCCCGTAGTACTTCTCCACCCACCAAAGAGGCAAACGGACAAAACGACTGCAAGTAAACTGAGTAAGAGTCGTTTTATTCGTTTACCTTTTAAGTAGGTAGTTTTTCGATGGAAAATATAAGGATTCCCACACTTCTTCTTAAGAATCCC

***********************************.............(((((((((.((.(((((((((.(((((((((((..................))))))))))).))))))))).)).)))))))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:44 AM