ID:

ssc-mir-144

 Coordinate:

chr12:47176953-47177028 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.9 -40.7 -40.3

Sense Strand Reads

GCTCTCTGCCACAGTGCTTGCCAAGCCATGCTCCCTGCACCTCCTGCAGGGCCCTGGCTGGGATATCATCATATACTGTAAGTTTGCGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGTGCTCCCAGCTCTGGAGCCTGACGAGAGTAGGGGACGCCGCGAGCCCACAC

*********************************************...(((((((((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))).))))).))))********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR066810

testes		 SRR139076

testes		 SRR1274764

testes		 SRR1274763

ovary
............................................................GGATATCATCATATACTGTAAGT............................................................................................. 23 0 1 315.00 315 206 40 27 24 8 10
.................................................................................................TACAGTATAGATGATGTA............................................................. 18 0 1 142.00 142 117 11 8 1 5 0
.................................................................................................TACAGTATAGATGATGTACT........................................................... 20 0 1 114.00 114 56 30 16 5 4 3
............................................................GGATATCATCATATACTGTAAG.............................................................................................. 22 0 1 71.00 71 61 2 2 5 1 0
.................................................................................................TACAGTATAGATGATGTAC............................................................ 19 0 1 66.00 66 17 28 16 0 5 0
.................................................................................................TACAGTATAGATGATGTACTA.......................................................... 21 0 1 55.00 55 48 0 0 7 0 0
............................................................GGATATCATCATATACTGTAA............................................................................................... 21 0 1 39.00 39 36 1 0 1 0 1
............................................................GGATATCATCATATACTGTA................................................................................................ 20 0 1 35.00 35 24 4 3 3 1 0
..........................................................TGGGATATCATCATATACTG.................................................................................................. 20 0 1 30.00 30 28 0 1 1 0 0
..........................................................TGGGATATCATCATATACT................................................................................................... 19 0 1 26.00 26 21 1 0 4 0 0
.................................................................................................TACAGTATAGATGATG............................................................... 16 0 3 25.67 77 3 53 19 0 2 0
............................................................GGATATCATCATATACTGTAAGTT............................................................................................ 24 0 1 18.00 18 17 1 0 0 0 0
.................................................................................................TACAGTATAGATGATGTACTT.......................................................... 21 1 1 17.00 17 15 0 0 2 0 0
.................................................................................................TACAGTATAGATGATGT.............................................................. 17 0 1 16.00 16 13 1 1 0 1 0
.................................................................................................TACAGTATAGATGATGTACTAT......................................................... 22 1 1 15.00 15 12 0 0 3 0 0
..........................................................TGGGATATCATCATATACTGT................................................................................................. 21 0 1 13.00 13 9 0 1 1 2 0
............................................................GGATATCATCATATACTG.................................................................................................. 18 0 1 12.00 12 12 0 0 0 0 0
............................................................GGATATCATCATATACTGT................................................................................................. 19 0 1 12.00 12 11 0 0 1 0 0
..........................................................TGGGATATCATCATATACTGTA................................................................................................ 22 0 1 8.00 8 6 0 1 0 1 0
.................................................................................................TACAGTATAGATGATGTACTTT......................................................... 22 2 1 8.00 8 7 0 0 1 0 0
................................................................................................CTACAGTATAGATGATGTAC............................................................ 20 0 1 6.00 6 2 2 2 0 0 0
.................................................................................................TACAGTATAGATGATGTATT........................................................... 20 1 1 6.00 6 5 0 1 0 0 0
.................................................................................................TACAGTATAGATGATGTACTAA......................................................... 22 1 1 5.00 5 4 0 0 1 0 0
................................................................................................CTACAGTATAGATGATGTA............................................................. 19 0 1 4.00 4 2 1 0 1 0 0
..................................................................................................ACAGTATAGATGATGTACT........................................................... 19 0 1 4.00 4 2 1 0 1 0 0
................................................................................................CTACAGTATAGATGATGTACT........................................................... 21 0 1 4.00 4 0 2 0 1 0 1
............................................................GGATATCATCATATACTGTAAGTA............................................................................................ 24 1 1 3.00 3 0 1 2 0 0 0
.............................................................GATATTATCATATACTGTAAGT............................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0
............................................................GGATATCATCATATACTGTAAGA............................................................................................. 23 1 1 3.00 3 1 0 2 0 0 0
............................................................GGATATCATCATATACTGTAAGTTAAC......................................................................................... 27 2 1 2.00 2 2 0 0 0 0 0
............................................................GGATATCATCCTATACTGTAAGT............................................................................................. 23 1 1 2.00 2 1 1 0 0 0 0
............................................................GGATATCATTATATACTGTAAGT............................................................................................. 23 1 1 2.00 2 1 0 0 1 0 0
............................................................GGCTATCATCATATACTGTAAGT............................................................................................. 23 1 1 2.00 2 1 0 0 1 0 0
.............................................................GATATCATCATATACTGTAAGT............................................................................................. 22 0 1 2.00 2 0 1 1 0 0 0
............................................................GGATATCATCATATCCTGTAAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................TGGGCTATCATCATATACT................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
............................................................GGCTATCATCATATACTGTAA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GGATATCATCATATACTGTTAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
............................................................GGATATCCTCATATACTGTAA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGCACT........................................................... 20 1 1 1.00 1 0 0 0 1 0 0
............................................................GGATATTATCATATACTGTAAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................GGATCATCATATACTGTAAGT............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0
.........................................................ATTGGATATCATCATATACTGTAAGT............................................................................................. 26 2 1 1.00 1 0 0 1 0 0 0
............................................................GGATATCCTCATATACTGTAAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................TGGGATATCATCCTATACTG.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
............................................................GGATATCGTCATATACTGTAAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
............................................................GGATATCATCACATACTGTAAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CTACAGTATAGATGATGGAC............................................................ 20 1 1 1.00 1 0 1 0 0 0 0
............................................................GGATGTCATCATATACTGTAAG.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGTTCT........................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................GGTTATCATCATATACTGTAA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACCGTATAGATGATGTACT........................................................... 20 1 1 1.00 1 0 0 0 0 0 1
............................................................GGATATCGTCATATACTGT................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ACAGTATAGATGATGTA............................................................. 17 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................ACAGTATAGATGATGTACTT.......................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................TACAGTATAGATGATGTACTAGGA....................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGTGCTA.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GGAAATCATCATATACTGTAAG.............................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................GGGATATCATCATATACTGT................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................CACAGTATAGATGATGTACT........................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................TACAGGATAGATGATGTACTA.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGGACT........................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................TGGGATATCATCATATACTGTAA............................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
............................................................GGATATCATCATATACTGTCAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
............................................................GGATATCATCATATATTGTAA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................GGATATCATCATATACT................................................................................................... 17 0 2 1.00 2 2 0 0 0 0 0
............................................................GGATATCATCATATACTGGAAGT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................ACAGTATAGATGATGTAC............................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGTAA............................................................ 19 1 3 0.67 2 2 0 0 0 0 0
.................................................................................................TACAGAATAGATGATGTACT........................................................... 20 1 2 0.50 1 0 0 0 1 0 0
............................................................GGATATCATCATATAATGTAA............................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................GGATATCATCATATACTGCAA............................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................TCCAGTATAGATGATGTACTAT......................................................... 22 2 3 0.33 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGTAT............................................................ 19 1 3 0.33 1 1 0 0 0 0 0
..........................................................TGGGATATCATCATA....................................................................................................... 15 0 6 0.33 2 2 0 0 0 0 0
............................................................GGATATCATCATATACTGTAAAAC............................................................................................ 24 3 3 0.33 1 0 0 0 1 0 0
.................................................................................................TACAGTATAGTTGATGTACTA.......................................................... 21 1 7 0.29 2 2 0 0 0 0 0
.................................................................................................TACAGTATAGATGCTGTA............................................................. 18 1 7 0.29 2 2 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGTT............................................................. 18 1 6 0.17 1 0 0 0 1 0 0
.................................................................................................TACAGTATAGATGATTTACT........................................................... 20 1 8 0.13 1 1 0 0 0 0 0
.................................................................................................TACAGTATAGATGATGTACAT.......................................................... 21 2 20 0.10 2 2 0 0 0 0 0
...................................................................................TTGGGCTGAGACACTACAG.......................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
............................................................GGATATCATCATATACTTAA................................................................................................ 20 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CGAGAGACGGTGTCACGAACGGTTCGGTACGAGGGACGTGGAGGACGTCCCGGGACCGACCCTATAGTAGTATATGACATTCAAACGCTACTCTGTGATGTCATATCTACTACATGATCAGGCCCACGAGGGTCGAGACCTCGGACTGCTCTCATCCCCTGCGGCGCTCGGGTGTG

**********************************************...(((((((((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))).))))).))))********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:24 AM