ID:

ssc-mir-143

 Coordinate:

chr2:157344738-157344817 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.5 -42.2

Sense Strand Reads

TCTCCTGCCAGGCGGACCCCGCCGCCGGCCCTGGCGCAGCGCGGCGCCCTGTCCCCCAGCCGGAGGTGCAGTGCTGCATCTCTGGTCAGCTGGGAGTCTGAGATGAAGCACTGTAGCTCGGGAAGGGAGAAGCTGCTCTGCTGCACCATCGGGAAGCGGTACGTGGGGGCCAGGTGCTCG

*************************************************..((.(((..((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))..))).)).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR1274764

testes		 SRR1274763

ovary		 SRR139075

testes		 SRR139076

testes
..................................................................................................TGAGATGAAGCACTGTAGCTCT............................................................ 22 1 1 2218798.00 2218798 1573483 528521 47341 58246 8344 2863
..................................................................................................TGAGATGAAGCACTGTAGCTCG............................................................ 22 0 1 566255.00 566255 387264 152378 12006 12059 1970 578
..................................................................................................TGAGATGAAGCACTGTAGCTC............................................................. 21 0 1 466522.00 466522 271009 69520 47177 54990 18011 5815
..................................................................................................TGAGATGAAGCACTGTAGCT.............................................................. 20 0 1 342826.00 342826 115817 27215 123224 71558 4238 774
..................................................................................................TGAGATGAAGCACTGTAGCTCA............................................................ 22 1 1 102856.00 102856 79069 16176 3525 3563 413 110
..................................................................................................TGAGATGAAGCACTGTAGCTCTT........................................................... 23 2 1 45777.00 45777 24411 9600 3905 6207 1269 385
..................................................................................................TGAGATGAAGCACTGTAGCTCGT........................................................... 23 1 1 26378.00 26378 10473 4839 5008 5423 491 144
..................................................................................................TGAGATGAAGCACTGTAGC............................................................... 19 0 1 19839.00 19839 6514 2083 6792 3405 896 149
...................................................................................................GAGATGAAGCACTGTAGCTCT............................................................ 21 1 1 13998.00 13998 10626 3191 23 30 95 33
..................................................................................................TGAGATGAAGCACTGTAGCTCTA........................................................... 23 2 1 11598.00 11598 9002 1970 142 270 166 48
.................................................................................................CTGAGATGAAGCACTGTAGCTCT............................................................ 23 1 1 9790.00 9790 7612 1750 135 260 22 11
..................................................................................................TGAGATGAAGCACTGTAGCTT............................................................. 21 1 1 8706.00 8706 1879 468 2733 3544 63 19
..................................................................................................TGAGATGAAGCACTGTAGCTA............................................................. 21 1 1 2995.00 2995 896 378 695 289 493 244
..................................................................................................TGAGATGAAGCACTGTAGCTCC............................................................ 22 1 1 2879.00 2879 2037 523 112 189 16 2
...................................................................................................GAGATGAAGCACTGTAGCTC............................................................. 20 0 1 2698.00 2698 1978 450 19 30 180 41
...................................................................................................GAGATGAAGCACTGTAGCTCG............................................................ 21 0 1 2658.00 2658 1933 691 8 2 19 5
..................................................................................................TGAGATGAAGCACTGTAGCA.............................................................. 20 1 1 2605.00 2605 1319 547 414 205 94 26
..................................................................................................TGAGATGAAGCACTGTAGCTCGA........................................................... 23 1 1 2481.00 2481 1433 395 156 338 112 47
.................................................................................................CTGAGATGAAGCACTGTAGCTC............................................................. 22 0 1 2382.00 2382 1470 262 164 375 64 47
..................................................................................................TGAGATGAAGCACTGTAGTTCT............................................................ 22 2 1 2267.00 2267 1574 421 208 47 8 9
..................................................................................................TGAGATGAAGCACTGTAGCTCAT........................................................... 23 2 1 2234.00 2234 1339 461 182 231 18 3
................................................................GGTGCAGTGCTGCATCTCTGG............................................................................................... 21 0 1 2148.00 2148 1143 135 0 3 809 58
..................................................................................................TGAGATGAAGCACTGTAG................................................................ 18 0 1 2091.00 2091 241 108 1081 491 157 13
.................................................................................................CTGAGATGAAGCACTGTAGCT.............................................................. 21 0 1 1930.00 1930 745 103 549 499 28 6
..................................................................................................TGAGATGAAGCACTGTAGCTCGTT.......................................................... 24 2 1 1645.00 1645 1114 372 33 107 16 3
..................................................................................................TGAGATGAAGCACTGTAGCTCTC........................................................... 23 2 2 1438.50 2877 2339 400 28 67 32 11
..................................................................................................TGAGATGAGGCACTGTAGCTCT............................................................ 22 2 1 1276.00 1276 930 270 19 47 8 2
.................................................................................................CTGAGATGAAGCACTGTAGCTCG............................................................ 23 0 1 1251.00 1251 949 285 4 11 2 0
..................................................................................................TGAGATGAAGCACTGTAGCTAA............................................................ 22 2 1 1230.00 1230 779 257 38 47 68 41
..................................................................................................TGAGATGAAGTACTGTAGCTCT............................................................ 22 2 1 1158.00 1158 845 241 38 16 15 3
................................................................GGTGCAGTGCTGCATCTCT................................................................................................. 19 0 1 1101.00 1101 0 0 0 0 1001 100
..................................................................................................TGGGATGAAGCACTGTAGCTCT............................................................ 22 2 1 1091.00 1091 841 227 10 8 4 1
..................................................................................................TGAGATGAAGCACTGCAGCTCT............................................................ 22 2 1 1089.00 1089 765 279 9 17 14 5
..................................................................................................TGAGATGAAGCGCTGTAGCTCT............................................................ 22 2 1 1069.00 1069 758 276 12 15 4 4
..................................................................................................TGAGATGAAGCACTGTAGCTCTTT.......................................................... 24 3 3 1019.33 3058 1914 683 108 285 57 11
..................................................................................................TGAGACGAAGCACTGTAGCTCT............................................................ 22 2 1 972.00 972 694 247 6 15 7 3
..................................................................................................TGAGATGAAGCATTGTAGCTCT............................................................ 22 2 1 958.00 958 712 195 22 10 14 5
................................................................GGTGCAGTGCTGCATCTCTGGT.............................................................................................. 22 0 1 920.00 920 591 94 2 5 202 26
..................................................................................................TGAGATGAAGCACTGTAGCTCGG........................................................... 23 0 1 898.00 898 138 29 225 487 13 6
..................................................................................................TGAGATGGAGCACTGTAGCTCT............................................................ 22 2 1 889.00 889 641 223 3 14 6 2
................................................................GGTGCAGTGCTGCATCTCTGGA.............................................................................................. 22 1 1 838.00 838 62 9 7 12 626 122
..................................................................................................TGAGATGAAGCACTATAGCTCT............................................................ 22 2 1 832.00 832 608 202 8 6 6 2
..................................................................................................TGAGGTGAAGCACTGTAGCTCT............................................................ 22 2 1 827.00 827 598 206 7 7 7 2
..................................................................................................TGAGATGAAGCACTGTAGCCCT............................................................ 22 2 1 780.00 780 573 176 13 12 3 3
..................................................................................................TGAGATGAAGCACTGTAGTTC............................................................. 21 1 1 740.00 740 360 80 214 43 35 8
..................................................................................................TGAGATAAAGCACTGTAGCTCT............................................................ 22 2 2 738.50 1477 1178 282 6 6 4 1
.................................................................................................CTGAGATGAAGCACTGTAGCTCA............................................................ 23 1 1 733.00 733 627 65 18 21 1 1
...................................................................................................GAGATGAAGCACTGTAGCT.............................................................. 19 0 1 682.00 682 496 105 51 18 12 0
..................................................................................................TGAGATGAAGCACCGTAGCTCT............................................................ 22 2 2 633.00 1266 908 327 12 18 1 0
..................................................................................................TGAGATGAAGCACTGTAGCTCAA........................................................... 23 2 1 611.00 611 455 83 8 34 19 12
..................................................................................................TGAGATGAAGTACTGTAGCT.............................................................. 20 1 1 532.00 532 264 86 143 32 7 0
..................................................................................................TGAGATGAAGTACTGTAGCTC............................................................. 21 1 1 469.00 469 293 74 51 13 31 7
..................................................................................................TGAGATGAAGCACTGTAGCTCGC........................................................... 23 1 1 454.00 454 287 68 40 56 3 0
..................................................................................................TGAGATGAAGCACTGTAGA............................................................... 19 1 2 448.50 897 292 106 369 113 15 2
...................................................................................................GAGATGAAGCACTGTAGCTCA............................................................ 21 1 1 441.00 441 352 81 2 0 4 2
..................................................................................................TGAGATGAAGCACTGTAGCTTT............................................................ 22 2 3 425.00 1275 753 162 108 226 18 8
..................................................................................................TGAGATGAAGCACTGTAGCTTG............................................................ 22 1 1 418.00 418 320 84 8 5 1 0
..................................................................................................TGAGATGTAGCACTGTAGCTCT............................................................ 22 2 1 405.00 405 298 102 2 1 1 1
..................................................................................................TAAGATGAAGCACTGTAGCTCG............................................................ 22 1 1 381.00 381 283 93 2 2 1 0
..................................................................................................TGAGATGAGGCACTGTAGCTCG............................................................ 22 1 1 373.00 373 246 97 9 19 2 0
..................................................................................................TGAGATGAAGCCCTGTAGCTCT............................................................ 22 2 1 366.00 366 254 82 10 9 7 4
..................................................................................................TGAGATGAGGCACTGTAGCTC............................................................. 21 1 1 362.00 362 247 48 9 42 12 4
..................................................................................................TGAGATAAAGCACTGTAGCTCG............................................................ 22 1 1 362.00 362 273 86 1 2 0 0
..................................................................................................TGAGATGAACCACTGTAGCTCT............................................................ 22 2 1 357.00 357 250 81 8 11 4 3
..................................................................................................TGAGATGAAGCACTGTAGTTCG............................................................ 22 1 1 354.00 354 249 61 33 8 3 0
..................................................................................................CGAGATGAAGCACTGTAGCTCG............................................................ 22 1 1 349.00 349 247 94 6 1 0 1
..................................................................................................TGAGATGAAGCACTGTAGCTCGGT.......................................................... 24 1 1 334.00 334 46 9 55 218 5 1
..................................................................................................TGAGATGAAGCACTGTAGCTTA............................................................ 22 2 1 333.00 333 251 58 11 12 1 0
..................................................................................................TGGGATGAAGCACTGTAGCTCG............................................................ 22 1 1 326.00 326 213 109 1 2 1 0
..................................................................................................TGAGATGAAGCACTGTACCTCT............................................................ 22 2 1 321.00 321 233 70 6 7 4 1
..................................................................................................TGAGATGAAGCACTGTAGCTCTTA.......................................................... 24 3 3 312.67 938 721 144 20 44 6 3
..................................................................................................TGAGATGAAGCACCGTAGCTCG............................................................ 22 1 1 308.00 308 227 75 5 1 0 0
..................................................................................................TGAGATGAAGCACTGTAGCG.............................................................. 20 1 1 295.00 295 11 0 194 87 3 0
..................................................................................................TAAGATGAAGCACTGTAGCTCT............................................................ 22 2 5 288.00 1440 1134 285 5 5 9 2
..................................................................................................TGAGATGAAGCACTGCAGCTCG............................................................ 22 1 1 283.00 283 187 86 4 3 3 0
....................................................................................................AGATGAAGCACTGTAGCTCT............................................................ 20 1 4 281.50 1126 876 231 4 0 9 6
..................................................................................................TGAGATGAAGCACTGTGGCTCT............................................................ 22 2 3 275.33 826 592 213 8 10 2 1
..................................................................................................TGAGATGAAGCACTGTAGCTAT............................................................ 22 2 2 271.50 543 204 107 81 52 72 27
..................................................................................................TGAGATGAAGCGCTGTAGCTCG............................................................ 22 1 1 262.00 262 175 79 3 3 1 1
..................................................................................................TGAGATGAAGCACTGTAGCTCTG........................................................... 23 1 1 259.00 259 114 21 34 71 14 5
..................................................................................................CGAGATGAAGCACTGTAGCTC............................................................. 21 1 1 258.00 258 185 32 6 12 16 7
..................................................................................................TGAGATGAAGTACTGTAGCTCG............................................................ 22 1 1 255.00 255 187 60 3 1 4 0
..................................................................................................TGAGATGAAGCACTGAAGCTCT............................................................ 22 2 2 252.50 505 350 137 4 6 6 2
..................................................................................................TGAGATGAAGCACTGCAGCTC............................................................. 21 1 1 252.00 252 148 35 10 18 29 12
...................................................................................................GAGATGAAGCACTGTAGCTCTT........................................................... 22 2 1 251.00 251 164 63 1 1 18 4
..................................................................................................TAAGATGAAGCACTGTAGCTC............................................................. 21 1 1 248.00 248 170 46 5 5 18 4
..................................................................................................TGAGATGAAGCACTGTAGCCCG............................................................ 22 1 1 244.00 244 181 44 6 8 3 2
..................................................................................................TGAGATAAAGCACTGTAGCTC............................................................. 21 1 1 244.00 244 197 32 5 5 4 1
..................................................................................................TGAGATGAAGCACCGTAGCTC............................................................. 21 1 1 240.00 240 154 42 20 13 9 2
..................................................................................................TGAGATGAAGCGCTGTAGCTC............................................................. 21 1 1 235.00 235 151 33 17 14 15 5
..................................................................................................TGAGATGAAGCACTGTAGT............................................................... 19 1 1 234.00 234 52 36 97 41 8 0
..................................................................................................CGAGATGAAGCACTGTAGCTCT............................................................ 22 2 6 232.00 1392 996 355 9 18 8 6
..................................................................................................TGAGATGGAGCACTGTAGCTCG............................................................ 22 1 1 232.00 232 174 53 1 3 1 0
..................................................................................................TGAGATGAAGCATTGTAGCTCG............................................................ 22 1 1 232.00 232 166 59 2 3 1 1
..................................................................................................TGAGATGAAGCACTGTAGCTG............................................................. 21 1 1 222.00 222 31 12 103 57 16 3
..................................................................................................TGAGATGAAGCATTGTAGCTC............................................................. 21 1 1 220.00 220 120 21 22 8 33 16
..................................................................................................TGAGGTGAAGCACTGTAGCTCG............................................................ 22 1 1 220.00 220 153 63 1 2 0 1
...............................................................................................ATTTGAGATGAAGCACTGTAGCTCG............................................................ 25 2 1 217.00 217 153 64 0 0 0 0
..................................................................................................TGAGATGATGCACTGTAGCTCT............................................................ 22 2 1 217.00 217 160 55 1 1 0 0
..................................................................................................TGAGATGAAGCACTGTATCTCT............................................................ 22 2 1 216.00 216 155 45 2 2 10 2
.....................................................................................................GATGAAGCACTGTAGCT.............................................................. 17 0 1 216.00 216 5 0 165 46 0 0
..................................................................................................TGAGATGAAGCACTGTTGCTCT............................................................ 22 2 2 215.50 431 287 123 14 7 0 0
....................................................................................................AGATGAAGCACTGTAGCTC............................................................. 19 0 1 215.00 215 132 26 6 6 37 8
..................................................................................................TGAGATGAAGCACTGTAACTCT............................................................ 22 2 2 212.00 424 312 99 5 5 2 1
.....................................................................................................GATGAAGCACTGTAGCTCGGGA......................................................... 22 0 1 211.00 211 48 8 34 100 15 6
...............................................................................................ATTTGAGATGAAGCACTGTAGCTCT............................................................ 25 3 3 209.67 629 449 180 0 0 0 0
..................................................................................................TGGGATGAAGCACTGTAGCTC............................................................. 21 1 1 207.00 207 138 34 4 12 14 5
..................................................................................................TGAGATGCAGCACTGTAGCTCT............................................................ 22 2 1 206.00 206 151 38 3 6 5 3
..................................................................................................TGAGATGAAGCACTGTAGCTCCT........................................................... 23 2 2 206.00 412 257 65 30 59 1 0
..................................................................................................TGAGATGAAGCACTGTGGCTCG............................................................ 22 1 1 205.00 205 141 61 0 1 2 0
..................................................................................................TGAGACGAAGCACTGTAGCTCG............................................................ 22 1 1 204.00 204 143 58 2 1 0 0
..................................................................................................TGAGATGAAGCACTGTAGTT.............................................................. 20 1 1 201.00 201 107 33 39 16 6 0
..................................................................................................TGAGATGAGGCACTGTAGCT.............................................................. 20 1 1 199.00 199 113 25 27 25 9 0
..................................................................................................TTAGATGAAGCACTGTAGCTCT............................................................ 22 2 1 198.00 198 136 47 1 6 6 2
..................................................................................................GGAGATGAAGCACTGTAGCTCT............................................................ 22 2 1 197.00 197 157 37 2 1 0 0
..................................................................................................TGAGATGAAGCACTTTAGCTCT............................................................ 22 2 2 195.50 391 324 56 3 3 3 2
....................................................................................................AGATGAAGCACTGTAGCTCG............................................................ 20 0 1 194.00 194 130 56 2 2 4 0
..................................................................................................TGAGATGAAGCACTCTAGCTCT............................................................ 22 2 2 193.00 386 281 87 8 10 0 0
..................................................................................................TGAGATGAAGCACTATAGCTCG............................................................ 22 1 1 191.00 191 148 42 1 0 0 0
..................................................................................................TGAGATGAAGCACTGTAGCCC............................................................. 21 1 1 189.00 189 121 29 18 13 6 2
..................................................................................................TGAGATGGAGCACTGTAGCTC............................................................. 21 1 1 188.00 188 100 30 20 15 18 5
.................................................................................................CTGAGATGAAGCACTGTAGC............................................................... 20 0 1 186.00 186 105 22 34 17 5 3
................................................................GGTGCAGTGCTGCATCTCTGGAA............................................................................................. 23 2 1 186.00 186 4 1 0 1 137 43
.....................................................................................................GATGAAGCACTGTAGCTCGGGAA........................................................ 23 0 1 184.00 184 9 1 38 102 21 13
..................................................................................................TGAGGTGAAGCACTGTAGCTC............................................................. 21 1 1 181.00 181 117 35 5 7 15 2
..................................................................................................TGAGACGAAGCACTGTAGCTC............................................................. 21 1 1 180.00 180 109 33 10 7 19 2
................................................................GGTGCAGTGCTGCATCTC.................................................................................................. 18 0 1 176.00 176 0 0 1 1 162 12
..................................................................................................TGAGATGAAGCACTGTAACTCG............................................................ 22 1 1 171.00 171 126 40 2 1 0 2
..................................................................................................AGAGATGAAGCACTGTAGCTCT............................................................ 22 2 3 167.67 503 376 119 1 2 5 0
..................................................................................................TGAGATGAAGCACTGTAGCTCGTA.......................................................... 24 2 1 167.00 167 113 16 11 19 7 1
..................................................................................................TGAGATGAAGCACTATAGCTC............................................................. 21 1 1 166.00 166 108 33 10 5 9 1
..................................................................................................TGAGATGAAACACTGTAGCTCT............................................................ 22 2 3 164.67 494 360 121 4 8 1 0
..................................................................................................TGAGATGAATCACTGTAGCTCT............................................................ 22 2 2 153.00 306 236 55 2 6 5 2
..................................................................................................CGAGATGAAGCACTGTAGCT.............................................................. 20 1 1 144.00 144 75 13 33 19 3 1
..................................................................................................TGAGATGAAGCACTGTGGCTC............................................................. 21 1 1 143.00 143 99 18 3 7 14 2
.................................................................................................CTGAGATGAAGCACTGTAGCTCTT........................................................... 24 2 1 142.00 142 82 27 9 18 4 2
..................................................................................................TGAGATGAAGCGCTGTAGCT.............................................................. 20 1 1 139.00 139 56 13 49 11 9 1
......................................................................................................ATGAAGCACTGTAGCTCGGGAA........................................................ 22 0 1 138.00 138 11 1 30 85 7 4
..................................................................................................TGAGATGAAGCACTGTAGCTAG............................................................ 22 1 1 136.00 136 34 12 69 17 3 1
..................................................................................................TGAGATGAAGCACTGTAGCC.............................................................. 20 1 1 134.00 134 38 7 48 34 5 2
..................................................................................................TGAGATGAAGCACAGTAGCTCG............................................................ 22 1 1 132.00 132 91 41 0 0 0 0
..................................................................................................TGAGATGAAGCACTGAAGCTCG............................................................ 22 1 1 131.00 131 92 38 0 0 0 1
..................................................................................................TGGGATGAAGCACTGTAGCT.............................................................. 20 1 1 131.00 131 63 18 29 14 6 1
..................................................................................................TGAGATGAAGCACTGCAGCT.............................................................. 20 1 1 129.00 129 59 14 31 20 3 2
..................................................................................................TGAGATGAGGCACTGTAGCTCA............................................................ 22 2 1 122.00 122 102 16 1 3 0 0
..................................................................................................TGCGATGAAGCACTGTAGCTCT............................................................ 22 2 1 121.00 121 54 19 8 15 17 8
.......................................................................................................TGAAGCACTGTAGCTCG............................................................ 17 0 1 120.00 120 90 30 0 0 0 0
..................................................................................................TAAGATGAAGCACTGTAGCT.............................................................. 20 1 1 120.00 120 88 15 11 3 3 0
................................................................GGTGCAGTGCTGCATCTCTG................................................................................................ 20 0 1 119.00 119 0 1 0 0 110 8
..................................................................................................TGAGATGAAGCTCTGTAGCTCT............................................................ 22 2 3 117.00 351 247 99 3 1 0 1
..................................................................................................TGAGATGAAGCACTGTAGTTCA............................................................ 22 2 1 113.00 113 86 21 4 2 0 0
..................................................................................................TGAGATGAAGCACTGTA................................................................. 17 0 2 111.50 223 12 7 57 44 89 14
..................................................................................................TGAGATGAAGCATTGTAGCT.............................................................. 20 1 1 111.00 111 57 9 15 9 18 3
..................................................................................................TGAGATGGAGCACTGTAGCT.............................................................. 20 1 1 110.00 110 70 10 13 12 5 0
..................................................................................................TGAGATGAAGCACTGTCGCTCT............................................................ 22 2 1 110.00 110 79 20 4 6 1 0
..................................................................................................TGAGATGAACCACTGTAGCTC............................................................. 21 1 1 107.00 107 57 21 9 15 3 2
..................................................................................................TGAGATGAAACACTGTAGCTCG............................................................ 22 1 1 107.00 107 75 30 1 1 0 0
..................................................................................................TGAGATGAAGCACTGTAGCAA............................................................. 21 2 5 106.40 532 185 101 86 41 67 52
..................................................................................................TGAGATGAAGCACTGAAGCTC............................................................. 21 1 1 106.00 106 69 23 0 3 6 5
..................................................................................................TGAGACGAAGCACTGTAGCT.............................................................. 20 1 1 106.00 106 56 11 25 10 4 0
..................................................................................................TGAGCTGAAGCACTGTAGCTCT............................................................ 22 2 1 104.00 104 54 22 11 8 6 3
..................................................................................................TGAGATGACGCACTGTAGCTCT............................................................ 22 2 1 103.00 103 63 19 3 7 7 4
..................................................................................................TGAGATGAAGCACCGTAGCT.............................................................. 20 1 1 101.00 101 43 10 29 17 1 1
..................................................................................................TGAGATGAAGCACTGTAGCACG............................................................ 22 1 1 100.00 100 74 26 0 0 0 0
..................................................................................................TGAGATGAAGCACTGTGGCT.............................................................. 20 1 1 100.00 100 56 13 19 7 4 1
..................................................................................................TGAGATGAACCACTGTAGCT.............................................................. 20 1 1 100.00 100 54 11 28 7 0 0
...............................................................................................ATTTGAGATGAAGCACTGTAGCTC............................................................. 24 2 1 99.00 99 79 20 0 0 0 0
..................................................................................................TGAGATGAAGCAATGTAGCTCT............................................................ 22 2 1 98.00 98 65 18 6 9 0 0
..................................................................................................TGAGAAGAAGCACTGTAGCTCT............................................................ 22 2 2 96.00 192 153 37 1 0 1 0
..................................................................................................TGAGATGAAGCACTGTACCTCG............................................................ 22 1 1 96.00 96 71 20 3 1 0 1
..................................................................................................TGAGATGAAACACTGTAGCTC............................................................. 21 1 1 96.00 96 58 18 1 4 11 4
..................................................................................................AGAGATGAAGCACTGTAGCTCG............................................................ 22 1 1 95.00 95 67 26 0 0 2 0
..................................................................................................AGAGATGAAGCACTGTAGCTC............................................................. 21 1 1 94.00 94 61 15 1 2 11 4
..................................................................................................TGAGATGAAGCTCTGTAGCTC............................................................. 21 1 1 94.00 94 62 16 4 4 5 3
..................................................................................................TGAGATGAAGCACTGTAGCTCTTC.......................................................... 24 3 1 93.00 93 61 9 1 7 13 2
..................................................................................................TAAGATGAAGCACTGTAGCTCA............................................................ 22 2 1 93.00 93 84 8 0 0 1 0
..................................................................................................TGAGATGAACCACTGTAGCTCG............................................................ 22 1 1 92.00 92 56 27 6 3 0 0
..................................................................................................TGTGATGAAGCACTGTAGCTCT............................................................ 22 2 3 91.33 274 202 68 1 2 0 1
..................................................................................................TGAAATGAAGCACTGTAGCTCG............................................................ 22 1 1 91.00 91 74 17 0 0 0 0
..................................................................................................TGAGATTAAGCACTGTAGCTCT............................................................ 22 2 2 90.50 181 139 26 5 3 3 5
..................................................................................................TGAGATGAATCACTGTAGCTC............................................................. 21 1 1 90.00 90 57 12 1 2 13 5
..................................................................................................TGAGATGAAGCCCTGTAGCTC............................................................. 21 1 1 89.00 89 39 9 19 3 17 2
................................................................GGTGCAGTGCTGCATCTCTGGTC............................................................................................. 23 0 1 88.00 88 62 7 4 4 11 0
...................................................................................................GAGATGAAGCACTGTAGCTCGT........................................................... 22 1 1 88.00 88 56 27 2 0 3 0
..................................................................................................TGAGATGAAGCACTGTAGATCT............................................................ 22 2 1 88.00 88 61 17 3 3 3 1
.....................................................................................................GATGAAGCACTGTAGCTC............................................................. 18 0 1 86.00 86 24 9 25 27 1 0
..................................................................................................TGAGGTGAAGCACTGTAGCT.............................................................. 20 1 1 86.00 86 38 17 21 6 4 0
..................................................................................................TGCGATGAAGCACTGTAGCTC............................................................. 21 1 1 84.00 84 11 1 8 7 48 9
..................................................................................................TGAGATGTAGCACTGTAGCTCG............................................................ 22 1 1 84.00 84 63 21 0 0 0 0
..................................................................................................TGATATGAAGCACTGTAGCTCT............................................................ 22 2 2 81.00 162 103 50 2 2 1 4
..................................................................................................TGAGATGAAGCACTCTAGCTC............................................................. 21 1 1 81.00 81 46 12 11 7 3 2
..................................................................................................TGAGATGAAGCACTTTAGCTCG............................................................ 22 1 1 80.00 80 68 10 0 1 1 0
..................................................................................................TGAGATGAAGCACTGTACCTC............................................................. 21 1 1 80.00 80 45 12 4 11 7 1
..................................................................................................TGAGATGAAGCCCTGTAGCTCG............................................................ 22 1 1 80.00 80 58 19 2 0 1 0
..................................................................................................TGAGATGCAGCACTGTAGCTC............................................................. 21 1 1 77.00 77 31 9 3 3 29 2
..................................................................................................TGAGATGAAGCACTGTAGCTGT............................................................ 22 2 1 76.00 76 36 11 16 11 1 1
..................................................................................................TGAGATGAAGCACTTTAGCTC............................................................. 21 1 1 76.00 76 56 5 2 1 11 1
..................................................................................................TGAGATGAAGCACTGTCGCTC............................................................. 21 1 1 76.00 76 36 5 9 5 13 8
..................................................................................................TGAGATGAAGCACTCTAGCTCG............................................................ 22 1 1 75.00 75 56 13 4 1 1 0
..................................................................................................CGAGATGAAGCACTGTAGCTCA............................................................ 22 2 1 75.00 75 62 11 1 0 0 1
................................................................GGTGCAGTGCTGCATCTCTGGTA............................................................................................. 23 1 1 75.00 75 33 1 3 3 33 2
..................................................................................................TGAGATGAAGCACTGTATCTCG............................................................ 22 1 1 75.00 75 51 18 0 1 3 2
..................................................................................................TGAGATGAAGCTCTGTAGCTCG............................................................ 22 1 1 75.00 75 52 23 0 0 0 0
................................................................GGTGCAGTGCTGCATCT................................................................................................... 17 0 1 74.00 74 0 0 0 0 71 3
....................................................................................................AGATGAAGCACTGTAGCT.............................................................. 18 0 1 72.00 72 44 5 13 4 5 1
...............................................................................................ATTTGAGATGAAGCACTGTAGCT.............................................................. 23 2 2 72.00 144 120 24 0 0 0 0
..................................................................................................TGAGATGAAGCACTGTAGCTCTGAAC........................................................ 26 3 1 70.00 70 1 0 0 0 34 35
..................................................................................................TGAGATGAAGCACTGTAGCTCCA........................................................... 23 2 1 69.00 69 49 5 5 10 0 0
..................................................................................................TGTGATGAAGCACTGTAGCTCG............................................................ 22 1 1 69.00 69 49 18 1 1 0 0
..................................................................................................TGAGATGTAGCACTGTAGCTC............................................................. 21 1 1 69.00 69 38 16 0 3 4 8
..................................................................................................TGAGATGAAGCACTGTAGCACT............................................................ 22 2 3 68.67 206 157 46 0 1 2 0
..................................................................................................TGAGATGAAGCACTGTATCTC............................................................. 21 1 1 68.00 68 25 3 4 0 30 6
..................................................................................................TGAGATGAAGCACTATAGCT.............................................................. 20 1 1 68.00 68 36 5 19 8 0 0
...................................................................................................GAGATGAAGCACTGTAGCTCTA........................................................... 22 2 1 66.00 66 51 13 0 1 1 0
..................................................................................................TGCGATGAAGCACTGTAGCT.............................................................. 20 1 1 66.00 66 6 1 30 11 15 3
..................................................................................................TCAGATGAAGCACTGTAGCTCT............................................................ 22 2 2 66.00 132 94 30 2 5 1 0
..................................................................................................TGACATGAAGCACTGTAGCTCT............................................................ 22 2 2 65.50 131 86 27 7 7 2 2
..................................................................................................TGAGATGAAGCACTGTAGCTCAG........................................................... 23 1 1 65.00 65 22 2 12 26 2 1
..................................................................................................TGAGATCAAGCACTGTAGCTCG............................................................ 22 1 1 65.00 65 47 16 1 0 1 0
..................................................................................................TGAGTTGAAGCACTGTAGCTCT............................................................ 22 2 2 64.50 129 93 33 0 1 1 1
..................................................................................................TGAGATGAAGCAGTGTAGCTCT............................................................ 22 2 2 64.00 128 92 30 2 1 0 3
..................................................................................................TGAGATAAAGCACTGTAGCT.............................................................. 20 1 2 63.50 127 92 11 18 5 1 0
..................................................................................................TGAGATGAAGTACTGTAGCTCA............................................................ 22 2 1 63.00 63 49 9 3 1 1 0
..................................................................................................TGAGATGAAGCACTGTAGGTCT............................................................ 22 2 2 62.00 124 92 27 1 0 4 0
..................................................................................................TGAGATGAAGCACTGTAACTC............................................................. 21 1 1 62.00 62 36 13 3 4 6 0
................................................................GGTGCAGTGCTGCATCTCTGA............................................................................................... 21 1 1 62.00 62 3 2 0 0 56 1
..................................................................................................TGAGATGAATCACTGTAGCTCG............................................................ 22 1 1 62.00 62 46 10 2 1 3 0
..................................................................................................TGTGATGAAGCACTGTAGCTC............................................................. 21 1 1 60.00 60 34 17 3 1 3 2
..................................................................................................TGAGATGAAGCACTGTAGCTAGA........................................................... 23 2 1 59.00 59 16 7 18 17 0 1
..................................................................................................TGAGATGAAGCACTGTAGCCCA............................................................ 22 2 1 59.00 59 44 10 1 4 0 0
..................................................................................................TGAGATGAAGCACTGTAGCTCATT.......................................................... 24 3 1 59.00 59 40 11 1 7 0 0
..................................................................................................TGAGATGAAGCACTGTAGCTGA............................................................ 22 2 1 58.00 58 20 5 10 8 11 4
..................................................................................................GGAGATGAAGCACTGTAGCTCG............................................................ 22 1 1 57.00 57 40 16 0 0 1 0
..................................................................................................TGAGATGAAGCCCTGTAGCT.............................................................. 20 1 1 57.00 57 18 7 21 8 3 0
..................................................................................................TGAGATGAAGCACTGTTGCTCG............................................................ 22 1 1 56.00 56 39 16 0 1 0 0
...................................................................................................GAGATGAAGCACTGTAGC............................................................... 18 0 1 56.00 56 37 8 2 0 9 0
..................................................................................................TGAGATGAAGAACTGTAGCTCT............................................................ 22 2 1 56.00 56 39 12 1 4 0 0
................................................................................................TCTGAGATGAAGCACTGTAGCTCT............................................................ 24 1 1 56.00 56 46 10 0 0 0 0
..................................................................................................TGAGATGAAGCACTTTAGCT.............................................................. 20 1 1 55.00 55 31 1 7 7 7 2
..................................................................................................TGAGATGAAGCACCGTAGCTCA............................................................ 22 2 1 55.00 55 46 8 0 1 0 0
..................................................................................................TGAGAGGAAGCACTGTAGCTCT............................................................ 22 2 1 55.00 55 35 18 0 0 0 2
..................................................................................................TGAGATGGAGCACTGTAGCTCA............................................................ 22 2 1 54.00 54 45 9 0 0 0 0
..................................................................................................GGAGATGAAGCACTGTAGCTC............................................................. 21 1 1 54.00 54 30 9 4 3 6 2
..................................................................................................TGAGATGAAGCACTGTCGCTCG............................................................ 22 1 1 54.00 54 39 10 0 2 2 1
..................................................................................................TGGGATGAAGCACTGTAGCTCA............................................................ 22 2 1 53.00 53 47 5 1 0 0 0
..................................................................................................TGAGATGATGCACTGTAGCTCG............................................................ 22 1 1 53.00 53 36 16 0 0 1 0
..................................................................................................TGAGATCAAGCACTGTAGCTC............................................................. 21 1 1 52.00 52 25 9 6 6 4 2
..................................................................................................TGAGATGAAGCACTGTAGCTCAC........................................................... 23 2 1 50.00 50 43 4 1 0 1 1
..................................................................................................TGAGATGAAGCACTGTCGCT.............................................................. 20 1 1 50.00 50 19 2 8 12 7 2
..................................................................................................TGAGATGAAGCACTGTATCT.............................................................. 20 1 1 49.00 49 10 7 4 3 23 2
..................................................................................................TGAGATTAAGCACTGTAGCTC............................................................. 21 1 1 48.00 48 16 10 4 4 12 2
..................................................................................................TGAGATGAAGCTCTGTAGCT.............................................................. 20 1 1 48.00 48 24 3 17 3 1 0
..................................................................................................TGAGATGAAGCACTGTAGCTCGCT.......................................................... 24 2 1 48.00 48 33 5 1 8 1 0
..................................................................................................TGAGATGAAGCGCTGTAGCTCA............................................................ 22 2 1 47.00 47 37 7 2 0 1 0
..................................................................................................TGAGATGATGCACTGTAGCTC............................................................. 21 1 1 47.00 47 33 7 2 3 1 1
..................................................................................................TGAGCTGAAGCACTGTAGCTC............................................................. 21 1 1 47.00 47 11 1 6 12 9 8
..................................................................................................TGAGATGAAGCAGTGTAGCTCG............................................................ 22 1 1 46.00 46 31 13 0 0 1 1
.................................................................................................CTGAGATGAAGCACTGTAGCTCTA........................................................... 24 2 1 46.00 46 39 3 0 0 4 0
..................................................................................................TGAGATGAAACACTGTAGCT.............................................................. 20 1 1 46.00 46 22 6 10 6 2 0
..................................................................................................TGAGATGAAGCACTGTAGCAC............................................................. 21 1 1 46.00 46 30 10 0 1 5 0
..................................................................................................TTAGATGAAGCACTGTAGCTC............................................................. 21 1 1 46.00 46 25 2 0 5 9 5
...............................................................................................TTATGAGATGAAGCACTGTAGCTCT............................................................ 25 3 1 46.00 46 35 11 0 0 0 0
..................................................................................................TGAGATCAAGCACTGTAGCTCT............................................................ 22 2 5 45.40 227 171 44 3 7 1 1
..................................................................................................TGAGATGAAGCACTGTAGCTCTTG.......................................................... 24 2 1 45.00 45 25 7 4 8 1 0
..................................................................................................TGAGATGAAGCACTGTAGCTCGTTT......................................................... 25 3 1 45.00 45 22 14 2 7 0 0
..................................................................................................TGAGATAAAGCACTGTAGCTCA............................................................ 22 2 2 44.00 88 80 7 0 1 0 0
................................................................GGTGCAGTGCTGCATCTCTGGTAT............................................................................................ 24 2 1 43.00 43 1 0 1 0 30 11
..................................................................................................TGAGGTGAAGCACTGTAGCTCA............................................................ 22 2 1 43.00 43 34 9 0 0 0 0
..................................................................................................TGAGATGAAGCACTGTACCT.............................................................. 20 1 1 42.00 42 15 2 10 7 8 0
..................................................................................................TGAGATGACGCACTGTAGCTC............................................................. 21 1 1 42.00 42 12 1 4 4 14 7
.................................................................................................CTGAGATGAAGCACTGTAGCTT............................................................. 22 1 1 42.00 42 6 0 18 17 0 1
..................................................................................................TTAGATGAAGCACTGTAGCTCG............................................................ 22 1 1 42.00 42 28 10 0 0 4 0
..................................................................................................TGAGATGAAGCACTGTAGCTAAA........................................................... 23 3 7 41.00 287 209 43 5 3 14 13
................................................................GGTGCAGTGCTGCATCTCTGGTT............................................................................................. 23 1 1 41.00 41 19 2 1 4 12 3
................................................................................................TCTGAGATGAAGCACTGTAGCTC............................................................. 23 0 1 40.00 40 19 4 3 6 8 0
..................................................................................................TGAGATGAAGCACGGTAGCTCT............................................................ 22 2 3 39.33 118 87 28 1 2 0 0
..................................................................................................TGACATGAAGCACTGTAGCTCG............................................................ 22 1 1 39.00 39 28 10 1 0 0 0
..................................................................................................TGAAATGAAGCACTGTAGCTC............................................................. 21 1 2 38.50 77 57 13 0 1 4 2
..................................................................................................TGAGATGAAGCACTGTGGCTCA............................................................ 22 2 1 38.00 38 24 13 0 1 0 0
..................................................................................................TGCGATGAAGCACTGTAGCTCG............................................................ 22 1 1 38.00 38 28 1 4 0 5 0
..................................................................................................TGAGATGAAGCACTGTAGCGCT............................................................ 22 2 1 38.00 38 27 11 0 0 0 0
..................................................................................................TGAGATGAAGCACTGTAGCTCTAT.......................................................... 24 3 2 37.50 75 37 6 2 21 8 1
..................................................................................................TGAGATGAAGCACTATAGCTCA............................................................ 22 2 1 37.00 37 30 7 0 0 0 0
...............................................................................................ATCTGAGATGAAGCACTGTAGCTCT............................................................ 25 2 1 37.00 37 25 12 0 0 0 0
..................................................................................................TGAGATGAAGCACTGAAGCT.............................................................. 20 1 1 37.00 37 18 8 5 3 3 0
.....................................................................................................GATGAAGCACTGTAGCTCG............................................................ 19 0 1 36.00 36 20 5 8 3 0 0
..................................................................................................TGAGACGAAGCACTGTAGCTCA............................................................ 22 2 1 36.00 36 32 3 1 0 0 0
...............................................................AGGTGCAGTGCTGCATCTCTGG............................................................................................... 22 0 1 35.00 35 26 5 0 0 4 0
....................................................................................................AGATGAAGCACTGTAGCTCGGT.......................................................... 22 1 1 35.00 35 13 2 0 7 11 2
..................................................................................................TGAGCTGAAGCACTGTAGCT.............................................................. 20 1 1 34.00 34 7 0 16 4 6 1
..................................................................................................TGAGATGAAGCACTCTAGCT.............................................................. 20 1 1 34.00 34 11 3 11 5 3 1
..................................................................................................TGAGATTAAGCACTGTAGCTCG............................................................ 22 1 1 34.00 34 26 7 0 0 0 1
..................................................................................................TCAGATGAAGCACTGTAGCTC............................................................. 21 1 1 34.00 34 16 7 3 4 3 1
..................................................................................................TGAGTTGAAGCACTGTAGCTCG............................................................ 22 1 1 34.00 34 23 11 0 0 0 0
..................................................................................................TGAGATGAAGCACTGTAGCTTGT........................................................... 23 2 1 34.00 34 11 3 9 6 3 2
..................................................................................................TGAGATGAAGCAATGTAGCTC............................................................. 21 1 1 34.00 34 9 2 5 15 1 2
..................................................................................................TGAGATGAAGCACAGTAGCTC............................................................. 21 1 4 33.25 133 94 25 0 4 5 5
..................................................................................................TGAGATGCAGCACTGTAGCTCG............................................................ 22 1 1 33.00 33 22 9 1 0 1 0
..................................................................................................TGAGATGGAGCACTGTAGCTCTT........................................................... 23 3 1 33.00 33 25 5 1 1 1 0
..................................................................................................AGAGATGAAGCACTGTAGCT.............................................................. 20 1 1 33.00 33 23 3 2 1 3 1
..................................................................................................TGAGATGAGGCACTGTAGCTCTT........................................................... 23 3 1 32.00 32 18 4 2 8 0 0

Anti-sense strand reads

AGAGGACGGTCCGCCTGGGGCGGCGGCCGGGACCGCGTCGCGCCGCGGGACAGGGGGTCGGCCTCCACGTCACGACGTAGAGACCAGTCGACCCTCAGACTCTACTTCGTGACATCGAGCCCTTCCCTCTTCGACGAGACGACGTGGTAGCCCTTCGCCATGCACCCCCGGTCCACGAGC

*********************************************..((.(((..((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))..))).)).....************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary
.............................................................TCTCCATGTCACGACGTAGAGT................................................................................................. 22 3 20 0.05 1 1

Generated: 09/01/2015 at 11:33 AM