ID:

ssc-mir-138

 Coordinate:

chr13:30329402-30329486 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.3 -51.7 -51.5
mature

  1. ssc-mir-138  chr13:30329412-30329434 +
  2. GL894339-1:3127-3149 -
star

Sense Strand Reads

AGGAAGGGACACCTCGACTGTCGGCTGCCCCAGAGGCCCCCCAAGAAGGTGCGGTGGGGCAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGTCACACCCCACCACAGGCAGCACTCCGGGCACCAGCCCCCATCGTGCTTCCACCTCAGCCATCGG

***********************************((((........((((((((((((...(((((((((((((...(((((((...........)))))))..))))))))))))).......))))))).......)))))..))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR1274764

testes		 SRR139076

testes		 SRR1274763

ovary
............................................................AGCTGGTGTTGTGAATCAGGCCG...................................................................................................... 23 0 2 8.50 17 7 7 1 1 0 1
............................................................AGCTGGTGTTGTGAATCAGGC........................................................................................................ 21 0 2 7.50 15 3 5 6 0 1 0
............................................................AGCTGGTGTTGTGAATCAGGCCGT..................................................................................................... 24 0 1 6.00 6 1 4 1 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCA....................................................................................................... 22 1 2 2.50 5 2 3 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAG.......................................................................................................... 19 0 2 2.00 4 3 1 0 0 0 0
.................................................................................................CCGGCTACTTCACAACACCAGGGT................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCGTAA................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCA........................................................................................................... 18 0 2 1.00 2 0 1 1 0 0 0
....................................................................................................GCTACTTCACAACACCAGGGG................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.........................................CAACAAGGTGCGGTGGGGC............................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCAT...................................................................................................... 23 2 2 1.00 2 1 0 1 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCGTT.................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................CGGCTACTTCACAACACCAGGC................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCAA...................................................................................................... 23 2 4 0.50 2 0 1 1 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCA...................................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCGC..................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCAG...................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCGG..................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCGATA................................................................................................... 26 2 2 0.50 1 0 0 1 0 0 0
............................................................AGCTGGTGTTGTGAATCAGG......................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGA........................................................................................................ 21 1 2 0.50 1 0 1 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCCT...................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAATCAGGCC....................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
............................................................AGCTGGTGTTGTGAAT............................................................................................................. 16 0 3 0.33 1 0 0 1 0 0 0
............................................................AGCTGGTGTTGTGCATCAGGCAT...................................................................................................... 23 3 4 0.25 1 0 0 0 0 1 0
.............................................................GCTGGTGTTGTGAATCAGGCA....................................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0

Anti-sense strand reads

TCCTTCCCTGTGGAGCTGACAGCCGACGGGGTCTCCGGGGGGTTCTTCCACGCCACCCCGTCGACCACAACACTTAGTCCGGCAACGGTTAGTCTCTTGCCGATGAAGTGTTGTGGTCCCAGTGTGGGGTGGTGTCCGTCGTGAGGCCCGTGGTCGGGGGTAGCACGAAGGTGGAGTCGGTAGCC

***********************************((((........((((((((((((...(((((((((((((...(((((((...........)))))))..))))))))))))).......))))))).......)))))..))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:26 AM