ID:

ssc-mir-136

 Coordinate:

chr7:132079194-132079275 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.0

Sense Strand Reads

gccgccgcctgccgcGCTCCGCTGCCCGGCGTCTCCACGGTGGTGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTACGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATGTCGTCGGATGGAAAGGAGTGCCCTCTGAAGACGGGTAAGGTCGC

*************************************************..((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).))))))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR1274763

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274764

testes
................................................................ACTCCATTTGTTTTGATGATGG................................................................................................ 22 0 1 105.00 105 99 1 5 0 0
..................................................................................................CATCATCGTCTCAAATGAGTCT.............................................................. 22 0 1 65.00 65 15 47 2 0 1
................................................................ACTCCATTTGTTTTGATGATG................................................................................................. 21 0 1 12.00 12 3 6 2 0 1
................................................................ACTCCATTTGTTTTGATGATGGA............................................................................................... 23 0 1 10.00 10 3 0 1 6 0
...................................................................................................ATCATCGTCTCAAATGAGTCT.............................................................. 21 0 1 8.00 8 2 4 2 0 0
..................................................................................................CATCATTGTCTCAAATGAGTCT.............................................................. 22 1 1 4.00 4 0 0 0 4 0
...................................................................................................ATCATCGTCTCAAATGAGTCTT............................................................. 22 0 1 4.00 4 2 2 0 0 0
...............................................................CACTCCATTTGTTTTGATGATGGA............................................................................................... 24 1 1 2.00 2 2 0 0 0 0
......................................................................................................ATCGTCTCAAATGAGTCT.............................................................. 18 0 1 2.00 2 2 0 0 0 0
.............................................................AGGACTCCATTTGTTTTGATGAT.................................................................................................. 23 0 1 2.00 2 0 2 0 0 0
..................................................................................................CATCATCGTCTCAAATGAGTC............................................................... 21 0 1 2.00 2 1 0 0 1 0
.....................................................................................................CATCGTCTCAAATGAGTCTTCT........................................................... 22 1 1 1.00 1 0 1 0 0 0
................................................................ACTCCATTTGTCTTGATGATGG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
................................................................ACTCCATTTGTTATGATGATGG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................................................................CATCATCGTCTCAAATGAGT................................................................ 20 0 1 1.00 1 0 0 0 1 0
.............................................................AGGACTCCATTTGTTTTGATGA................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
....................................................................................................TCATCGTCTCAAATGAGTCT.............................................................. 20 0 1 1.00 1 0 1 0 0 0
................................................................ACTCCATTTGTTTTGATGAT.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
................................................................ACTCCATTTGTTTTAATGATGG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................................................................CATCATCGTCTCAAATGAGTCTA............................................................. 23 1 1 1.00 1 0 1 0 0 0
....................................................................................................TCATCGTCTCAAATGAGTCTT............................................................. 21 0 1 1.00 1 0 1 0 0 0
...................................................................................................ATCATCGTCTCAAATGAGTC............................................................... 20 0 1 1.00 1 0 1 0 0 0
................................................................TCTCCATTTGTTTTGATGATGG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.............................................................AGGACTCCATTTGTTTTGATG.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................ACTCCATTTGTTTTGATGATGGAA.............................................................................................. 24 1 1 1.00 1 0 0 1 0 0
..................................................................................................TATCATCGTCTCAAATGAGT................................................................ 20 1 1 1.00 1 1 0 0 0 0
...................................................................................................ATCATCGTCTCAAATGAGCCT.............................................................. 21 1 1 1.00 1 1 0 0 0 0
..................................................................................................CATCATCGTCTCAAATGAGTCAA............................................................. 23 2 1 1.00 1 0 0 0 0 1
..................................................................TCCATTTGTTTTGATGATGGA............................................................................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................ACTCCATTTATTTTGATGATGG................................................................................................ 22 1 1 1.00 1 0 0 1 0 0
.....................................................................ATTTGTTGTGATGATGG................................................................................................ 17 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

gGGgGGgGGtgGGgGCGAGGCGACGGGCCGCAGAGGTGCCACCACAACCTACTCGGGAGCCTCCTGAGGTAAACAAAACTACTACCTAAGAATGCGAGGTAGTAGCAGAGTTTACTCAGAAGTCTCCCAAGATAGTACAGCAGCCTACCTTTCCTCACGGGAGACTTCTGCCCATTCCAGCG

***********************************************..((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).))))))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR139076

testes
.........................................................................................................................................CAGCAGCCTACATTT.............................. 15 1 11 0.27 3 2 1
.........................................................................................................................................CAGCAGCCTACATTTG............................. 16 2 20 0.05 1 1 0

Generated: 09/01/2015 at 11:40 AM