ID:

ssc-mir-135-1

 Coordinate:

chr13:37564051-37564140 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. ssc-mir-135-1  chr13:37564067-37564089 +
  2. ssc-mir-135-2  chr5:90552102-90552124 -
star

Sense Strand Reads

GAGAAGAGAGCACGGCCAGGGCGGAGGAGGGGGCCAGCAGGAGCAGCCCCAGGCCTCGCTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTACTGCTCATTCATATAGGGATTGGAGCCGTGGCGCACGGCGGGGACAGCCAGCGGAGGGCTGGGACACTTAGCAAAGGGGCCCAAGGAGAGCCAGGA

***************************************************..(((((((((...((((((((((..((((((((((((.............)))))))))))).))))))))))...)))))))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR1274763

ovary		 SRR139076

testes		 SRR1274764

testes
..................................................................TATGGCTTTTTATTCCTATGTGA..................................................................................................... 23 0 2 198.50 397 225 23 89 48 5 7
..................................................................TATGGCTTTTTATTCCTATGTG...................................................................................................... 22 0 2 61.50 123 83 25 8 5 1 1
..................................................................TATGGCTTTTTATTCCTATGT....................................................................................................... 21 0 2 25.00 50 7 37 0 4 2 0
..................................................................TATGGCTTTTTATTCCTATGTGT..................................................................................................... 23 1 2 10.00 20 13 2 1 2 2 0
..................................................................TATGGCTTTTTATTCCTATG........................................................................................................ 20 0 2 5.00 10 0 6 0 3 0 1
...............................................................ATATATGGCTTTTCATTCCTATGTGA..................................................................................................... 26 3 4 3.75 15 13 0 2 0 0 0
........................................................................................................ATATAGGGATTGGAGCCGTGGC................................................................ 22 0 1 3.00 3 0 2 0 1 0 0
........................................................................................................ATATAGGGATTGGAGCCGTGGCAT.............................................................. 24 2 1 3.00 3 1 2 0 0 0 0
..................................................................TATGGCTTTTTATTCCTATGTGAA.................................................................................................... 24 1 2 2.50 5 2 0 3 0 0 0
..................................................................TATGGCTTTTTATTCCTATGTGG..................................................................................................... 23 1 2 2.00 4 3 0 0 1 0 0
..................................................................TATGGTTTTTTATTCCTATGTG...................................................................................................... 22 1 2 2.00 4 0 4 0 0 0 0
..................................................................TATGGCTTTTTATTCTTATGTG...................................................................................................... 22 1 2 2.00 4 1 3 0 0 0 0
.........................................................................................................TATAGGGATTGGAGCCGTGGCTA.............................................................. 23 2 1 2.00 2 0 2 0 0 0 0
.................................................................CTATGGCTTTTTATTCCTATGTGA..................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0
..................................................................TATGGCTTTTTATTCCTATGTGAT.................................................................................................... 24 0 2 2.00 4 1 0 2 1 0 0
..................................................................TATGGCTTTTTATTCCTAT......................................................................................................... 19 0 2 1.50 3 0 3 0 0 0 0
.................................................................ATATGGCTTTTTATTCCTATGTGA..................................................................................................... 24 1 2 1.50 3 2 0 1 0 0 0
........................................................................................................ATATAGGGATTGGAGCCGTGGCATT............................................................. 25 3 1 1.00 1 0 0 0 1 0 0
...................................................................ATGGCTTTTTATTCCTATGTGA..................................................................................................... 22 0 2 1.00 2 0 2 0 0 0 0
..................................................................TATGGCTTTTTATTCCTATGTA...................................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0
..................................................................TATGGCTTTTTATTCCTATGTGAG.................................................................................................... 24 1 2 1.00 2 1 0 1 0 0 0
..................................................................TATGGCTTTTTATTCCTATGTGAAG................................................................................................... 25 2 2 1.00 2 0 0 2 0 0 0
..................................................................TATGGCTTTTTATTTCTATGTGA..................................................................................................... 23 1 2 1.00 2 0 2 0 0 0 0
.................................................................CTATGGCTTTTTATTTCTATGTGA..................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................................TATGGCTTTTTATTCTTATGTGA..................................................................................................... 23 1 2 1.00 2 1 0 0 0 1 0
........................................................................................................ATATAGGGATTGGAGCCGTGGCAAT............................................................. 25 3 1 1.00 1 0 0 0 1 0 0
........................................................................................................ATATAGGGATTGGAGCCGTGGCT............................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................................TTATATGGCTTTTCATTCCTATGTGA..................................................................................................... 26 3 4 0.75 3 3 0 0 0 0 0
..................................................................TACGGCTTTTTATTCCTATGTGA..................................................................................................... 23 1 2 0.50 1 0 0 0 0 1 0
................................................................CATATGGCTTTTTATTCCTATGTGA..................................................................................................... 25 2 4 0.50 2 2 0 0 0 0 0
..................................................................TTTGGCTTTTTATTCCTATGTGA..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
...................................................................ATGGCTTTTTATTCCTATGTG...................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
..................................................................TATGGCTTCTTATTCCTATGT....................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
..................................................................TATGGCCTTTTATTCCTATGT....................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
..................................................................TATGGCTTTTTATTCTTATGTGT..................................................................................................... 23 2 4 0.50 2 0 2 0 0 0 0
..................................................................TATGGCTTTTTATTTCTATGTG...................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
..................................................................TATGGCTTTTTATCCCTATGTGA..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................CATGGCTTTTTATTCCTATGTGA..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................TATGGCTTTTTATTCCTATGA....................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
..................................................................TATGGCTTTTTATTCCTATT........................................................................................................ 20 1 3 0.33 1 0 1 0 0 0 0
................................................................TATATGGCTTTTCATTCCTATGTCA..................................................................................................... 25 3 5 0.20 1 1 0 0 0 0 0

Anti-sense strand reads

CTCTTCTCTCGTGCCGGTCCCGCCTCCTCCCCCGGTCGTCCTCGTCGGGGTCCGGAGCGACAAGAGATACCGAAAAATAAGGATACACTAAGATGACGAGTAAGTATATCCCTAACCTCGGCACCGCGTGCCGCCCCTGTCGGTCGCCTCCCGACCCTGTGAATCGTTTCCCCGGGTTCCTCTCGGTCCT

*************************************************..(((((((((...((((((((((..((((((((((((.............)))))))))))).))))))))))...)))))))))....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1274764

testes		 SRR139076

testes
..............................................................................AAGGATACACTAAGATGACGAGTAAGTAT................................................................................... 29 0 1 1.00 1 0 1
..................................................TCCGGAGCGACAAGAGATACCGAAAAAT................................................................................................................ 28 0 1 1.00 1 1 0

Generated: 09/01/2015 at 11:26 AM