ID:

ssc-mir-1343

 Coordinate:

chr2:28433182-28433260 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-55.2 -54.9

Sense Strand Reads

GCCCTGGCAGCCGCCCATCTGGACAAAGGAACAGGATGATGATGATGCTGGCTTCGGTGCTGGGGAGCGGCCCCCGGGCGGGCCTCTGCTCTGGCCCCTCCTGGGGCCCGCACTCTCGCTCCGGGTCCGCTCCGCCTCGGCTGCTGACCCGCACCACGGGGAGATGGCACAGGGACACG

*********************************************((..((.(((((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).))))).))....))********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR1274763

ovary		 SRR1274764

testes		 SRR139076

testes
.................................................................................................CTCCTGGGGCCCGCACTCTCGC............................................................ 22 0 1 182.00 182 106 50 7 12 5 2
.................................................................................................CTCCTGGGGCCCGCACTCTCGCT........................................................... 23 0 1 94.00 94 47 28 5 8 5 1
.................................................................................................CTCCTGGGGCCCGCACTCTCG............................................................. 21 0 1 64.00 64 29 20 10 2 2 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGCA........................................................... 23 1 1 63.00 63 31 15 13 3 0 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGT............................................................ 22 1 1 28.00 28 14 11 1 1 0 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGCTT.......................................................... 24 1 1 8.00 8 6 1 1 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGCAT.......................................................... 24 2 1 7.00 7 3 0 3 0 0 1
............................................................TGGGGAGCGGCCCCCGGGCGGG................................................................................................. 22 0 1 5.00 5 1 1 3 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGA............................................................ 22 1 1 5.00 5 2 1 2 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTCTCGC............................................................ 23 0 1 5.00 5 4 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTC.............................................................. 20 0 1 4.00 4 1 0 1 0 1 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGTT........................................................... 23 1 1 4.00 4 0 4 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCT............................................................... 19 0 1 4.00 4 2 0 2 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTCTCGCT........................................................... 24 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTAA............................................................. 21 2 1 2.00 2 1 0 0 0 0 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGAA........................................................... 23 2 1 2.00 2 0 0 0 0 1 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGCTA.......................................................... 24 1 1 2.00 2 1 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGCAA.......................................................... 24 2 1 2.00 2 1 0 0 1 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGTAT.......................................................... 24 3 1 2.00 2 1 1 0 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCGGGTAA.............................................................................................. 25 3 1 2.00 2 0 0 1 0 0 1
............................................................TGGGGAGCGGCCCCCGGGCGGGAAT.............................................................................................. 25 2 1 2.00 2 0 0 2 0 0 0
.................................................................................................CTCCTGGGGCCCGCATTCTCGC............................................................ 22 1 1 2.00 2 0 0 2 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGAAG.......................................................... 24 3 1 1.00 1 1 0 0 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCGA.................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 1
.................................................................................................CTCCTGGGGCCCGCACTCTCGCG........................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TTCCTGGGGCCCGCACTCTCGCA........................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGGTCCGCACTCTCGCT........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCGGT................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................CTGGGGCCCGCACTCTCGCT........................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGAT........................................................... 23 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................GCGCGCCTCCTGGGGCCCGCACTCTCGC............................................................ 28 3 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGTA........................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGATA.......................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGTTA.......................................................... 24 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................TCCTGGGGCCCGCACTCTCGC............................................................ 21 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGTCCGCACTCTCGC............................................................ 22 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGTG........................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGAGCCCGCACTCTCGC............................................................ 22 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGACCCGCACTCTCGCT........................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCA............................................................. 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCGC.............................................................. 20 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGTTT.......................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGCTTT......................................................... 25 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................CTGGGGCCCGCACTCTCGT............................................................ 19 1 1 1.00 1 1 0 0 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCGGA................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCCTGAGGCCCGCACTCTCGCTT.......................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................TCTGGACAAAGGAACAGGATGATGAT........................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGGA........................................................... 23 2 1 1.00 1 0 1 0 0 0 0
................................AGGATGATGATGATGCTGGCTTCGGTGC....................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1
..................................................................................................TCCTGGGGCCCGCACTCTCGCT........................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGCAAA......................................................... 25 3 1 1.00 1 1 0 0 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTCTCGCG........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCC............................................................. 21 1 1 1.00 1 0 0 0 0 0 1
............................................................TGGGGAGCGGCCCCCGGGCGGAT................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................CTCCTTGGGCCCGCACTCTCGCAT.......................................................... 24 3 1 1.00 1 0 0 1 0 0 0
................................................................................................ACTCCTGGGGCCCGCACTCTCGCTT.......................................................... 25 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGCCCGCACTCTCGCTGT......................................................... 25 2 1 1.00 1 1 0 0 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTCTCG............................................................. 22 0 1 1.00 1 0 1 0 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCGGGTAC.............................................................................................. 25 3 1 1.00 1 0 0 1 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTCTCGCTT.......................................................... 25 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGCCCCCACTCTCGCT........................................................... 23 1 1 1.00 1 0 0 1 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTCTCGT............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCG................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
............................................................TGGGGAGCGGCCCCCGGGCGAAA................................................................................................ 23 3 5 0.20 1 0 0 1 0 0 0
.................................................................................................CTCCTGGGGCCCGCATCCTCG............................................................. 21 2 5 0.20 1 1 0 0 0 0 0
................................................................................................CCTCCTGGGGCCCGCACTTCG.............................................................. 21 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CGGGACCGTCGGCGGGTAGACCTGTTTCCTTGTCCTACTACTACTACGACCGAAGCCACGACCCCTCGCCGGGGGCCCGCCCGGAGACGAGACCGGGGAGGACCCCGGGCGTGAGAGCGAGGCCCAGGCGAGGCGGAGCCGACGACTGGGCGTGGTGCCCCTCTACCGTGTCCCTGTGC

*********************************************((..((.(((((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).))))).))....))********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:31 AM