ID:

ssc-mir-133b

 Coordinate:

chr7:52430290-52430369 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.1 -47.1 -47.0
mature

  1. ssc-mir-133a-1  chr17:69274676-69274696 -
  2. ssc-mir-133a-2  chr6:99485253-99485273 +
  3. ssc-mir-133b  chr7:52430336-52430356 +
star

Sense Strand Reads

CCAGGAATCCTCACCCTAGAGGCTGCAGTCACCTCCTGCAGGAGCTGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTATAGCAGGGCTGGCAAAGAACAGTCCTTGGAGGAACAGAAGAGATTCCACTGTGGCTGAAATT

***********************************....((((..(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))........)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR1274763

ovary		 SRR139076

testes		 SRR066810

testes		 SRR1274764

testes
................................................................................................TTTGGTCCCCTTCAACCAGCT............................................................... 21 0 3 9.33 28 11 9 4 1 2 1
................................................................................................TTTGGTCCCCTTCAACCAGC................................................................ 20 0 3 3.67 11 4 2 4 1 0 0
.................................................................................................TTGGTCCCCTTCAACCAGCT............................................................... 20 0 3 2.67 8 3 0 3 1 0 1
.................................................................................................TTGGTCCCCTTCAACCAGC................................................................ 19 0 3 1.33 4 0 0 0 0 3 1
................................................................................................TTTGGTCCCCTTCAACCAGCTAT............................................................. 23 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................TTGGTCCCCTTCAACCAGCTAAA............................................................ 23 1 1 1.00 1 0 0 0 1 0 0
.................................................................................................TTGGTCCCCTTCAACCAGCTTT............................................................. 22 1 3 0.67 2 1 0 0 1 0 0
................................................................................................TTTGGTCCCCTTCAACCAGCTT.............................................................. 22 1 3 0.67 2 1 0 0 0 0 1
................................................................................................TTTGGTCCCCTTCAACCAG................................................................. 19 0 3 0.67 2 0 2 0 0 0 0
...................................................................................................GGTCCCCTTCAACCAGCT............................................................... 18 0 3 0.67 2 0 2 0 0 0 0
..................................................................................................TGGTCCCCTTCAACCAGCTCT............................................................. 21 1 3 0.33 1 1 0 0 0 0 0
.................................................................................................TTGGTCCCCTTCAACCAGCTT.............................................................. 21 1 3 0.33 1 1 0 0 0 0 0
................................................................................................TTTGGTCCCTTTCAACCAGCTT.............................................................. 22 2 4 0.25 1 1 0 0 0 0 0

Anti-sense strand reads

GGTCCTTAGGAGTGGGATCTCCGACGTCAGTGGAGGACGTCCTCGACGGGGGACGAGACCGACCAGTTTGCCTTGGTTCAGGCAGAAGGACTCTCCAAACCAGGGGAAGTTGGTCGATATCGTCCCGACCGTTTCTTGTCAGGAACCTCCTTGTCTTCTCTAAGGTGACACCGACTTTAA

***********************************....((((..(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))........)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:40 AM