ID:

ssc-mir-130b

Coordinate:

chr14:53695562-53695641 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.9 -37.9 -37.9

Sense Strand Reads

CAGATCCCCACTCACCACCAACCCTGGACCACCAGGAGAGGCTCTGGCAGGCCTGCCTGACACTCTTTCCCTGTTGCACTACTGTGGGCCACTGGGAAGCAGTGCAATGATGAAAGGGCATCAGTCAGGCCCAGCCTGCCGTCCACAGTGCCTGGGGGGAGGGGGGTCTTGCTGCCTCAT

**********************************************...((((((.((((..(((((((..(((((((((.((..((....))....)).)))))))))..)))))))..)))).)))))).....********************************************
Read size # Mismatch Hit Count Total Norm Total SRR139075

testes
SRR1274763

ovary
SRR066809

ovary
SRR139076

testes
SRR1274764

testes
SRR066810

testes
...................................................................................................CAGTGCAATGATGAAAGGGCAT........................................................... 22 0 1 1206.00 1206 887 79 87 121 15 17
...................................................................................................CAGTGCAATGATGAAAGGGCA............................................................ 21 0 1 207.00 207 93 50 33 5 19 7
...................................................................................................CAGTGCAATGATGAAAGGGCATT.......................................................... 23 1 1 194.00 194 74 70 24 6 16 4
.............................................................ACTCTTTCCCTGTTGCACTACT................................................................................................. 22 0 1 139.00 139 32 58 33 8 5 3
...................................................................................................CAGTGCAATGATGAAAGGGCAA........................................................... 22 1 1 131.00 131 109 10 3 7 0 2
...................................................................................................CAGTGCAATGATGAAAGGGCATA.......................................................... 23 1 1 76.00 76 18 30 11 6 6 5
...................................................................................................CAGTGCAATGATGAAAGGGC............................................................. 20 0 1 58.00 58 16 27 11 0 4 0
....................................................................................................AGTGCAATGATGAAAGGGCAT........................................................... 21 0 1 33.00 33 25 1 2 3 0 2
...................................................................................................CAGTGCAATGATGAAAGGGCATTT......................................................... 24 2 1 21.00 21 20 0 1 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTAC.................................................................................................. 21 0 1 20.00 20 6 8 4 0 1 1
.............................................................ACTCTTTCCCTGTTGCACTA................................................................................................... 20 0 1 13.00 13 6 6 1 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGG.............................................................. 19 0 1 10.00 10 5 0 1 2 0 2
.............................................................ACTCTTTCCCTGTTGCACT.................................................................................................... 19 0 1 10.00 10 0 5 3 0 0 2
...................................................................................................CAGTGCAATGATGAAAGGGCGT........................................................... 22 1 1 10.00 10 9 1 0 0 0 0
....................................................................................................AGTGCAATGATGAAAGGGCA............................................................ 20 0 1 7.00 7 4 1 1 1 0 0
...................................................................................................CAGTGCAATGATGAAAGG............................................................... 18 0 1 7.00 7 6 0 0 1 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATTA......................................................... 24 1 1 6.00 6 4 0 0 2 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCAAT.......................................................... 23 2 1 6.00 6 5 1 0 0 0 0
...................................................................................................CAGTGCAATGATGACAGGGCAT........................................................... 22 1 1 6.00 6 3 0 0 3 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATAT......................................................... 24 2 1 5.00 5 4 1 0 0 0 0
....................................................................................................AGTGCAATGATGAAAGGGCAA........................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATAA......................................................... 24 1 1 4.00 4 2 2 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATG.......................................................... 23 1 1 4.00 4 0 4 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCAGT.......................................................... 23 2 1 4.00 4 3 1 0 0 0 0
...................................................................................................CAGTGCACTGATGAAAGGGCAT........................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..................................................................................................ACAGTGCAATGATGAAAGGGCAT........................................................... 23 1 1 3.00 3 3 0 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTACA................................................................................................. 22 1 1 3.00 3 0 3 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTACTG................................................................................................ 23 0 1 3.00 3 0 3 0 0 0 0
...................................................................................................CAGGGCAATGATGAAAGGGCAT........................................................... 22 1 1 3.00 3 3 0 0 0 0 0
....................................................................................................AGTGCAATGATGAAAGGGCATT.......................................................... 22 1 1 3.00 3 1 1 1 0 0 0
....................................................................................................AGTGCAATGATGAAAGGGCATA.......................................................... 22 1 1 3.00 3 0 1 0 0 2 0
...................................................................................................CAGTGCAATAATGAAAGGGCAT........................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...................................................................................................CAGTGCAATGTTGAAAGGGC............................................................. 20 1 3 2.33 7 6 0 0 0 0 1
...................................................................................................CAGTGCAATGTTGAAAGGGCAT........................................................... 22 1 3 2.33 7 6 0 1 0 0 0
...................................................................................................CAGCGCAATGATGAAAGGGCAT........................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................ACTCTTTCCTTGTTGCACTACT................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGAGCAT........................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCCT........................................................... 22 1 1 2.00 2 1 0 0 1 0 0
....................................................................................................AGTGCAATGATGAAAGGGC............................................................. 19 0 1 2.00 2 0 1 0 1 0 0
...................................................................................................CAGTGCCATGATGAAAGGGCAT........................................................... 22 1 1 2.00 2 1 0 0 1 0 0
...................................................................................................CAGTGCAATGATGAAAGTGCAT........................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTAT.................................................................................................. 21 1 1 2.00 2 1 0 1 0 0 0
...................................................................................................CAGTGTAATGATGAAAGGGCA............................................................ 21 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCAG........................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGATAGGGCAT........................................................... 22 1 1 2.00 2 0 0 0 2 0 0
.............................................................ACTCTTTCCCTGTTGCACTACTT................................................................................................ 23 1 1 2.00 2 0 0 2 0 0 0
...................................................................................................CAGTGCGATGATGAAAGGGCAT........................................................... 22 1 1 2.00 2 1 0 0 1 0 0
...................................................................................................CAGTCCAATGATGAAAGGGCAA........................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGTAT........................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGTGCATT.......................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ACAGTGCAATGATGAAAGGGCA............................................................ 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCAAA.......................................................... 23 2 4 1.25 5 2 3 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGTCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATCGAAC...................................................... 27 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................AGTGCAATGATGAAAGCGCAT........................................................... 21 1 1 1.00 1 0 0 0 1 0 0
....................................................................................................AGTGCAATGATGAAAGGGCATAA......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TAGTGCAATGATGAAAGGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................AGTGCAATGATGAAAGGGCGT........................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCCATGATGAAAGGGCATTA......................................................... 24 2 1 1.00 1 0 0 0 1 0 0
...................................................................................................CAGTGCCATGATGAAAGGGC............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAGGGGCGT........................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGCTGAAAGGGC............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................ATTCAGTGCAATGATGAAAGGGC............................................................. 23 2 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCAATT......................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCATTAC.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTACTGCAC............................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCGATGATGAAAGGGCAA........................................................... 22 2 1 1.00 1 0 0 0 1 0 0
...................................................................................................CAGTGCAATGATGAAAGGGTTT........................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAGTGATGAAAGGGCCT........................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTACTGTAG............................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCT............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
................................................................................................ATTCAGTGCAATGATGAAAGGGCAT........................................................... 25 2 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGGAAGGGCA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCACT.......................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCAC..................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGAAGGGGCAT........................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCG............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................ACACTCTTTCCCTGTTGCACTACT................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.............................................................ACTCTTTCCCTGTCGCACTAG.................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGTGCA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGACAGGGCA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................AGTGCAATGATGAAAGGGCATTT......................................................... 23 2 2 1.00 2 2 0 0 0 0 0
...................................................................................................CAATGCAATGATGAAAGGGCAT........................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...................................................................................................CAGCGCAATGATGAAAGGGCATT.......................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGTAAGGGCA............................................................ 21 1 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCGA........................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................AATCTTTCCCTGTTGCACTACT................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCCTT.......................................................... 23 2 1 1.00 1 0 0 0 1 0 0
...................................................................................................CAGTGCAATGATGGAAGGGCAT........................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...................................................................................................CGGTGCAATGATGAAAGGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGGAATGATGAAAGGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CCGTGCAATGATGAAAGGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATAAAAGGGCAT........................................................... 22 1 2 1.00 2 1 0 0 0 0 1
...................................................................................................CAGTGCAATGATGAACGGGCA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................GTGCAATGATGAAAGGGCAT........................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGCCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................................CTCTTTCCCTGTTGCACTACT................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGT............................................................. 20 1 1 1.00 1 0 0 0 0 1 0
...................................................................................................TAGTGCAATGATGAAAGGGCATA.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAACGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAATGCAATGATGAAAGGGCA............................................................ 21 1 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGAGAGGGCATA.......................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCCATGATGAAAGGGCA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGCGCAATGATGAAAGGGCA............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATC.......................................................... 23 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................AGCGCAATGATGAAAGGGCAT........................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTATT................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAGTGCAATGATGAAATGGCATT.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................ACTCTTTCCCTGTTGCACTAA.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAATGGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATAG......................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCCATGATGAAAGGGCATT.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCAC........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAATGGCAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGCATGT......................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................CAGTGCACTGATGAAAGGGCAA........................................................... 22 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGCGCAGTGATGAAAGGGCAT........................................................... 22 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATAAAAGGGC............................................................. 20 1 2 0.50 1 0 0 0 0 1 0
...................................................................................................CAGTGCAATGATGAAAGGGCATGGT........................................................ 25 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATAAAAGGGCAC........................................................... 22 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGTGCATA.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGGAAGTGCAT........................................................... 22 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................AGTGCAATGATAAAAGGGCAT........................................................... 21 1 2 0.50 1 0 0 1 0 0 0
...................................................................................................CAGAGCAATGATGAAAGGGCA............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGGGCAATGATGAAAGGGCA............................................................ 21 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAGGGTAA........................................................... 22 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGAAAG................................................................ 17 0 3 0.33 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGTTGAAAGGGCAC........................................................... 22 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................CCGTGCAATGTTGAAAGGGCAT........................................................... 22 2 3 0.33 1 0 0 0 1 0 0
...................................................................................................CAGTGCAATGTTGAAAGGGCA............................................................ 21 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................CAGTGCAATGATGGAAGGGCAA........................................................... 22 2 3 0.33 1 0 0 0 1 0 0
...............................................................ACTCTCCCTGTTGCACTACT................................................................................................. 20 2 12 0.25 3 3 0 0 0 0 0
...................................................................................................CAGTGCAATGTTGAGAGGGC............................................................. 20 2 5 0.20 1 1 0 0 0 0 0
...................................................................................................CAGTGCGATGTTGAAAGGGCAA........................................................... 22 3 15 0.07 1 0 1 0 0 0 0

Anti-sense strand reads

GTCTAGGGGTGAGTGGTGGTTGGGACCTGGTGGTCCTCTCCGAGACCGTCCGGACGGACTGTGAGAAAGGGACAACGTGATGACACCCGGTGACCCTTCGTCACGTTACTACTTTCCCGTAGTCAGTCCGGGTCGGACGGCAGGTGTCACGGACCCCCCTCCCCCCAGAACGACGGAGTA

********************************************...((((((.((((..(((((((..(((((((((.((..((....))....)).)))))))))..)))))))..)))).)))))).....**********************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:27 AM