ID:

ssc-mir-129b

 Coordinate:

chr18:21181553-21181636 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.8 -42.7 -42.6
mature

  1. ssc-mir-129b  chr18:21181563-21181583 +
  2. ssc-mir-129a  chr2:20324679-20324699 -
star

Sense Strand Reads

CCAGCCCTGGAGGGGGGCGCGTCCCCTCCCGCCCCAGCAGAGCTGCCGGCCCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTCTACAGAGAGGACACCACCCCATGGGCTCCAGGTAGGTCACA

*********************************************..(((((((.((((((((((((.(((..((((((.(((...((((....)).)).))).))))))..))).))))))).))))).))).))))...******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
............................................................CTTTTTGCGGTCTGGGCTTGC....................................................................................................... 21 0 2 141.50 283 175 87 4 2 10 5
........................................................................................................AAGCCCTTACCCCAAAAAGTAT.......................................................... 22 0 1 25.00 25 8 2 8 7 0 0
............................................................CTTTTTGCGGTCTGGGCTTG........................................................................................................ 20 0 2 15.00 30 9 14 4 1 1 1
............................................................CTTTTTGCGGTCTGGGCTTGA....................................................................................................... 21 1 2 14.50 29 12 14 2 0 1 0
............................................................CTTTTTGCGGTCTGGGCTTGT....................................................................................................... 21 1 2 10.00 20 7 12 0 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCA...................................................................................................... 22 1 2 9.50 19 11 6 0 0 0 2
........................................................................................................AAGCCCTTACCCCAAAAAGT............................................................ 20 0 1 8.00 8 0 7 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCT...................................................................................................... 22 0 2 5.50 11 10 1 0 0 0 0
......................................................................................................GGAAGCCCTTACCCCAAAAAGT............................................................ 22 0 1 4.00 4 2 0 1 1 0 0
............................................................CTTTTTGCGGTCTGGGCTT......................................................................................................... 19 0 2 3.00 6 4 0 1 0 1 0
.......................................................................................................GAAGCCCTTACCCCAAAAAGT............................................................ 21 0 1 3.00 3 2 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAT..................................................................................................... 23 2 2 2.50 5 4 1 0 0 0 0
........................................................................................................AAGCCCTTACCCCAAAAAGTAA.......................................................... 22 1 1 2.00 2 0 0 1 1 0 0
.......................................................................................................GAAGCCCTTACCCCAAAAAGTA........................................................... 22 0 1 2.00 2 0 0 1 1 0 0
.............................................................TTTTTGCGGTCTGGGCTTGC....................................................................................................... 20 0 2 2.00 4 1 3 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAA...................................................................................................... 22 2 2 1.50 3 1 1 0 1 0 0
........................................................................................................AAGCCCTTACCCCAAAAAGTA........................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................GGAAGCCCTTACCCCAAAAAGTAT.......................................................... 24 0 1 1.00 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTATGGGCTTGC....................................................................................................... 21 1 2 1.00 2 1 1 0 0 0 0
........................................................................................................AAGCCCTTACCCCAAAAAGTC........................................................... 21 1 1 1.00 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAAT.................................................................................................... 24 2 2 1.00 2 0 2 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTT..................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTAA....................................................................................................... 21 2 2 1.00 2 1 1 0 0 0 0
........................................................................................................AAGCCCTTACCCCAAAAAG............................................................. 19 0 2 1.00 2 1 1 0 0 0 0
........................................................................................................AAGCCCTTACCCCAAAAAGTAG.......................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................GAAGCTCTTACCCCAAAAAGT............................................................ 21 1 1 1.00 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAAT..................................................................................................... 23 3 4 0.75 3 3 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGGAGC.................................................................................................... 24 3 2 0.50 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAG..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGATTGA....................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTTCGGTCTGGGCTTGC....................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................TTTTTTGCGGTCTGGGCTTGC....................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCAGTCTGGGCTTGC....................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTGT.................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
.............................................................TTTTTGCGGTCTGGGCTTGCTGA.................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGTA...................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCCA..................................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
..............................................................CTTTGCGGTCTGGGCTTGC....................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 1
............................................................CTTTTTGCGGTCTGGGCTAGA....................................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTTTGGGCTTGC....................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGATT..................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTAT.................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAT...................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAATC................................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0
..............................................................TTTTGCGGTCTGGGCTTGCTGT.................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCGG..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCG...................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCGA..................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGACTTGC....................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCATT.................................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGTT...................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................AAGCCCTTACCCCAAAAA.............................................................. 18 0 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAA..................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTT........................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0
.............................................................TTTTTGCGGTCTGGGCTTGCTT..................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0
...........................................................CCTTTTTGCGGTCTGGGCTTGC....................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGCCTGGGCTTG........................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGTTTGTT...................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAAA.................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTA..................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGCCTTGC....................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGTGGTCTGGGCTTGCA...................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGTAT..................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAGT..................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAGA..................................................................................................... 23 3 6 0.17 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGTTTGAA...................................................................................................... 22 3 16 0.06 1 0 0 1 0 0 0
............................................................CTTTTTGTGGTCTGGGCTTA........................................................................................................ 20 2 19 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGTCGGGACCTCCCCCCGCGCAGGGGAGGGCGGGGTCGTCTCGACGGCCGGGGAAACCTAGAAAAACGCCAGACCCGAACGACAAGGAGAGATGTCATCAGTCCTTCGGGAATGGGGTTTTTCATAGACGCCCTCCGGAACAGATGTCTCTCCTGTGGTGGGGTACCCGAGGTCCATCCAGTGT

*******************************************..(((((((.((((((((((((.(((..((((((.(((...((((....)).)).))).))))))..))).))))))).))))).))).))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary
................TGCGCAGGGGAGGGCGGG...................................................................................................................................................... 18 1 14 0.07 1 1

Generated: 09/01/2015 at 11:32 AM