ID:

ssc-mir-129a

 Coordinate:

chr2:20324630-20324709 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.4
mature

star

  1. ssc-mir-129b  chr18:21181563-21181583 +
  2. ssc-mir-129a  chr2:20324679-20324699 -

Sense Strand Reads

CTGAAGGCGGCGGCAGCGGCGACGGACTGAAGAAGCCGGAGGACTCTGCCCTTCGTGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCACTCTTCGAAAAGACAGCAGCCACGAGCTATCGCCGAAGTCTG

*********************************************.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139076

testes		 SRR066810

testes		 SRR139075

testes		 SRR1274764

testes		 SRR1274763

ovary
......................................................................................................AAGCCCTTACCCCAAAAAGCAT........................................................ 22 0 1 285.00 285 77 111 38 56 2 1
............................................................CTTTTTGCGGTCTGGGCTTGC................................................................................................... 21 0 2 141.50 283 175 2 87 4 5 10
......................................................................................................AAGCCCTTACCCCAAAAAGCA......................................................... 21 0 1 65.00 65 10 23 23 9 0 0
......................................................................................................AAGCCCTTACCCCAAAAAGC.......................................................... 20 0 1 17.00 17 7 3 4 3 0 0
............................................................CTTTTTGCGGTCTGGGCTTG.................................................................................................... 20 0 2 15.00 30 9 1 14 4 1 1
............................................................CTTTTTGCGGTCTGGGCTTGA................................................................................................... 21 1 2 14.50 29 12 0 14 2 0 1
............................................................CTTTTTGCGGTCTGGGCTTGT................................................................................................... 21 1 2 10.00 20 7 1 12 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCA.................................................................................................. 22 1 2 9.50 19 11 0 6 0 2 0
......................................................................................................AAGCCCTTACCCCAAAAAGCATT....................................................... 23 0 1 8.00 8 5 1 0 2 0 0
......................................................................................................AAGCCCTTACCCCAAAAAGCAA........................................................ 22 1 2 6.00 12 1 7 3 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCT.................................................................................................. 22 0 2 5.50 11 10 0 1 0 0 0
......................................................................................................AAGCCCTTACCTCAAAAAGCAT........................................................ 22 1 1 4.00 4 0 1 0 3 0 0
............................................................CTTTTTGCGGTCTGGGCTT..................................................................................................... 19 0 2 3.00 6 4 0 0 1 0 1
......................................................................................................AAGCCCTTAGCCCAAAAAGCAT........................................................ 22 1 1 3.00 3 0 3 0 0 0 0
......................................................................................................AAGCTCTTACCCCAAAAAGCAT........................................................ 22 1 1 3.00 3 1 0 0 2 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAT................................................................................................. 23 2 2 2.50 5 4 0 1 0 0 0
......................................................................................................ACGCCCTTACCCCAAAAAGCAT........................................................ 22 1 1 2.00 2 0 1 0 1 0 0
.....................................................................................................GAAGCCCTTACCCCAAAAAGCA......................................................... 22 0 1 2.00 2 0 0 0 2 0 0
......................................................................................................AAGCCCTTACTCCAAAAAGCAT........................................................ 22 1 1 2.00 2 1 0 0 1 0 0
.............................................................TTTTTGCGGTCTGGGCTTGC................................................................................................... 20 0 2 2.00 4 1 0 3 0 0 0
......................................................................................................AAGCCCTTACCCCAAAAAGCATA....................................................... 23 1 1 2.00 2 0 2 0 0 0 0
......................................................................................................AAGCCCTTACCCCAAAAAGCCT........................................................ 22 1 1 2.00 2 0 1 0 1 0 0
......................................................................TCTGGGCTTGCTGTACATAACTCAATAGCC................................................................................ 30 0 1 2.00 2 0 0 0 0 2 0
.........................................................ATTCTCTTTGCGGTCTGGGCTTGC................................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAA.................................................................................................. 22 2 2 1.50 3 1 1 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAAT................................................................................................ 24 2 2 1.00 2 0 0 2 0 0 0
......................................................................................................AAGCCCTTATCCCAAAAAGCAT........................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................TGTACATAACTCAATAGCCGG.............................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTAA................................................................................................... 21 2 2 1.00 2 1 0 1 0 0 0
............................................................CTTTTTGCGGTATGGGCTTGC................................................................................................... 21 1 2 1.00 2 1 0 1 0 0 0
......................................................................................................ACGCCCTTACCCCAACAAGCAT........................................................ 22 2 1 1.00 1 0 1 0 0 0 0
......................................................................................................AAGCCCTTACCCTAAAAAGCAT........................................................ 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................AAGCCCTTACCCCAAAACGCAT........................................................ 22 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................AAGTCCTTACCCCAAAAAGCA......................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................GGACTCTGCCCTTCGTGAAT........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0
......................................................................................................AAGCCCTTACCCCAAAAAGCC......................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......................................................................TCTGGGCTTGCTGTACATAACTCAATAG.................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................AAGCCTTTACCCCAAAAAGCAT........................................................ 22 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................AATCCCTTACCCCAAAAAGCATT....................................................... 23 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................AAGCCCTTACCCCAAAAAG........................................................... 19 0 2 1.00 2 1 0 1 0 0 0
......................................................................................................AAGCCCTTACTCCAAAAAGCA......................................................... 21 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................AAGCCCTTACCGCAAAAAGCAT........................................................ 22 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................AGCCCTTACCCCAAAAAGCAT........................................................ 21 0 1 1.00 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTT................................................................................................. 23 1 2 1.00 2 2 0 0 0 0 0
......................................................................................................GAGCCCTTACCCCAAAAAGCAT........................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................AAGCCTTACCCCAAAAAGCAT........................................................ 21 2 6 0.83 5 0 3 0 2 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAAT................................................................................................. 23 3 4 0.75 3 3 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTAT................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0
.............................................................TTTTTGCGGTCTGGGCTTGCTGA................................................................................................ 23 1 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCCA................................................................................................. 23 2 2 0.50 1 0 0 1 0 0 0
..............................................................CTTTGCGGTCTGGGCTTGC................................................................................................... 19 1 2 0.50 1 0 0 0 0 1 0
............................................................CTTTTTGCGGTCTGGGCTTGTA.................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCATT................................................................................................ 24 2 2 0.50 1 1 0 0 0 0 0
......................................................................................................AAGCCCTTACCCCAAAAA............................................................ 18 0 2 0.50 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGTTTGTT.................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGACTTGC................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...........................................................CCTTTTTGCGGTCTGGGCTTGC................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGTT.................................................................................................. 22 1 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCGG................................................................................................. 23 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAATC............................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGCCTGGGCTTG.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGCCTTGC................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................AAGCCCTTACCCCAACAAGCAA........................................................ 22 2 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGGAGC................................................................................................ 24 3 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAA................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0
............................................................TTTTTTGCGGTCTGGGCTTGC................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................AAGCCCTTACCCCAACAAGC.......................................................... 20 1 2 0.50 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGATTGA................................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTTCGGTCTGGGCTTGC................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGATT................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCAGTCTGGGCTTGC................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..............................................................TTTTGCGGTCTGGGCTTGCTGT................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTGT................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTTTGGGCTTGC................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.............................................................TTTTTGCGGTCTGGGCTTGCTT................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAAA................................................................................................ 24 3 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCG.................................................................................................. 22 1 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCAG................................................................................................. 23 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAT.................................................................................................. 22 1 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTAGA................................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTT.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCTA................................................................................................. 23 1 2 0.50 1 0 0 1 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGCGA................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0
......................................................................................................AATCCCTTACCCCAAAAAGCAA........................................................ 22 2 3 0.33 1 0 1 0 0 0 0
......................................................................................................AAGCCTTTACCCCAAAAAGCAA........................................................ 22 2 3 0.33 1 0 1 0 0 0 0
............................................................CTTTTTGTGGTCTGGGCTTGCA.................................................................................................. 22 2 3 0.33 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAGT................................................................................................. 23 3 4 0.25 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGCTTGTAT................................................................................................. 23 3 4 0.25 1 1 0 0 0 0 0
......................................................................................................AACCCCTTACTCCAAAAAGCAT........................................................ 22 2 6 0.17 1 0 0 0 1 0 0
............................................................CTTTTTGCGGTCTGGGCTTGAGA................................................................................................. 23 3 6 0.17 1 1 0 0 0 0 0
............................................................CTTTTTGCGGTCTGGGTTTGAA.................................................................................................. 22 3 16 0.06 1 0 0 0 1 0 0
............................................................CTTTTTGTGGTCTGGGCTTA.................................................................................................... 20 2 19 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GACTTCCGCCGCCGTCGCCGCTGCCTGACTTCTTCGGCCTCCTGAGACGGGAAGCACTTAGAAAAACGCCAGACCCGAACGACATGTATTGAGTTATCGGCCTTCGGGAATGGGGTTTTTCGTAAGCGCCTCCCGCGTGAGAAGCTTTTCTGTCGTCGGTGCTCGATAGCGGCTTCAGAC

*****************************************.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR139076

testes		 SRR066809

ovary
..................CGCAGCCTGACTTCTT.................................................................................................................................................. 16 1 5 0.20 1 1 0 0
...................GCAGCCTGACTTCTT.................................................................................................................................................. 15 1 18 0.11 2 1 1 0
..................CGCTGCCTGACATCTTA................................................................................................................................................. 17 2 20 0.05 1 1 0 0
.................CTGCTGCCTGACATCTT.................................................................................................................................................. 17 2 20 0.05 1 1 0 0
....................CTGCCTGACATCTTCGC............................................................................................................................................... 17 2 20 0.05 1 0 0 1

Generated: 09/01/2015 at 11:32 AM