ID:

ssc-mir-1271

 Coordinate:

chr2:83154226-83154303 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature

  1. ssc-mir-1271  chr2:83154273-83154293 -
  2. chr9:135060024-135060044 -
star

  1. chr1:41309561-41309579 -
  2. chr1:41385734-41385752 +
  3. chr1:134839523-134839541 +
  4. chr1:135042603-135042621 +
  5. chr11:74029668-74029686 -
  6. chr13:115526-115544 -
  7. chr13:138561017-138561035 +
  8. chr15:8931955-8931973 -
  9. chr17:50485321-50485339 +
  10. ssc-mir-1271  chr2:83154239-83154257 -
  11. chr5:9950580-9950598 +
  12. chr5:10128030-10128048 -
  13. chr6:108042218-108042236 +
  14. chr7:89752223-89752241 +
  15. chr7:89753277-89753295 +
  16. chr7:107403730-107403748 +
  17. chr8:16081822-16081840 -
  18. chr9:51422580-51422598 +
  19. chr9:114619482-114619500 +
  20. chrX:122043613-122043631 +
  21. chr13:22584-22602 -

Sense Strand Reads

TTGtGtGgtGGGggggTGggTTggTTGgTgtggTgTGTtTggggtGgtggTtGtTgtGTGgTTGGgtggTtGTttGgtgTgtGTtTtTtgTTGTTGtGTGggTGgTtTGTGggtGGgtTTGTGgTGtGGGgTTTGtGGGGtTggtGtGGTtttgtGgTgTttgTgTgtttGtGgTTtG

*********************************************.....................................................................................************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR1274763

ovary		 SRR066810

testes		 SRR139076

testes		 SRR1274764

testes
............................................................CTTGGCACCTAGTAAGCACTC................................................................................................. 21 0 2 313.00 626 208 172 142 36 29 39
............................................................CTTGGCACCTAGTAAGCACTCA................................................................................................ 22 0 2 265.50 531 259 94 85 72 10 11
............................................................CTTGGCACCTAGTAAGCACT.................................................................................................. 20 0 2 152.50 305 58 203 3 12 24 5
............................................................CTTGGCACCTAGTAAGCAC................................................................................................... 19 0 2 31.50 63 5 56 0 1 0 1
............................................................CTTGGCACCTGGTAAGCACTCA................................................................................................ 22 1 4 30.50 122 69 0 0 53 0 0
............................................................CTTGGCACCTGGTAAGCACTC................................................................................................. 21 1 5 26.20 131 68 0 0 63 0 0
............................................................CTTGGCACCTAGTAAGCACTCT................................................................................................ 22 1 3 25.33 76 36 11 17 12 0 0
............................................................CTTGGCACCTGGTAAGCACTCT................................................................................................ 22 2 12 8.17 98 45 0 0 53 0 0
............................................................CTTGGCACCTAGTAAGCACTCAA............................................................................................... 23 1 7 4.43 31 6 15 6 2 1 1
............................................................CTTGGCACCTAGTAAGCACTCAGT.............................................................................................. 24 0 1 4.00 4 2 1 0 0 1 0
................................................................................................AGTGCCTGCTATGTGCCAG............................................................... 19 0 20 3.80 76 1 71 0 1 3 0
.............................................................TTGGCACCTAGTAAGCACTC................................................................................................. 20 0 3 3.67 11 5 2 2 0 0 2
............................................................CTTGGCACCTAGTAAGCACTCC................................................................................................ 22 1 2 3.50 7 4 3 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGG.............................................................. 20 0 12 3.42 41 33 3 1 4 0 0
............................................................CTTGGCACCTAGTAAGCACTCATT.............................................................................................. 24 1 2 3.00 6 4 2 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCAGA.............................................................................................. 24 1 3 3.00 9 4 2 1 1 0 1
............................................................CTTGGCACCTGGTAAGCACT.................................................................................................. 20 1 16 2.69 43 21 0 0 22 0 0
.............................................................TTGGCACCTAGTAAGCACTCA................................................................................................ 21 0 3 2.67 8 3 4 0 1 0 0
............................................................CTTGGCACCTAGTAAGCA.................................................................................................... 18 0 2 2.50 5 1 4 0 0 0 0
.............................................................TTGGCACCTAGTAAGCACT.................................................................................................. 19 0 3 1.67 5 4 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCAAT.............................................................................................. 24 1 5 1.60 8 5 1 1 1 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGCAA........................................................... 23 1 13 1.31 17 0 17 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGCA............................................................ 22 0 7 1.14 8 4 2 0 2 0 0
............................................................CTTGGCACCTAGTAAGCACTCAG............................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTA................................................................................................. 21 1 6 1.00 6 0 5 0 0 0 1
............................................................CTTGGCACCTAGTAAGCACTCG................................................................................................ 22 1 4 1.00 4 3 0 0 1 0 0
............................................................CTTGGCACCTAGTAAGCACTCAGTT............................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCTGC.............................................................................................. 24 2 2 1.00 2 0 2 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGCATTGT........................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.............................................................TTGGCACCTGGTAAGCACTCA................................................................................................ 21 1 7 0.71 5 2 0 0 3 0 0
............................................................CTTGGCACCTACTAAGCACTC................................................................................................. 21 1 3 0.67 2 0 2 0 0 0 0
............................................................CTTGGCACCTAGTACGCACTC................................................................................................. 21 1 2 0.50 1 0 0 0 0 1 0
............................................................CTTGGCACCTAGTAAGCACTAA................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
.................................................................CACCTAGTAAGCACTC................................................................................................. 16 0 8 0.50 4 0 0 2 0 0 2
............................................................CTTGGCACCTAGTAAGCACTCAGG.............................................................................................. 24 1 2 0.50 1 1 0 0 0 0 0
............................................................CTTGGCACCTCGTAAGCACTCA................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGCATA.......................................................... 24 1 5 0.40 2 2 0 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTT................................................................................................. 21 1 8 0.38 3 0 3 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCGGA.............................................................................................. 24 2 3 0.33 1 0 0 0 0 1 0
............................................................CTTGGCACCTAGTAAGCACCC................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0
............................................................CTTGGCACCTAGTAAGAACTCA................................................................................................ 22 1 3 0.33 1 0 1 0 0 0 0
............................................................CTCGGCACCTAGTAAGCAC................................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0
..............................................................TGGCACCTAGTAAGCACTCA................................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0
..............................................................TGGCACCTAGTAAGCACT.................................................................................................. 18 0 3 0.33 1 0 1 0 0 0 0
............................................................ATTGGCACCTAGTAAGCACTCA................................................................................................ 22 1 3 0.33 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCCGA.............................................................................................. 24 2 3 0.33 1 0 1 0 0 0 0
............................................................CTTGCCACCTAGTAAGCACTC................................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCCAT.............................................................................................. 24 2 12 0.33 4 1 0 0 1 2 0
............................................................CTTGGCACCTATTAAGCACTCA................................................................................................ 22 1 3 0.33 1 0 1 0 0 0 0
..............................................................TGGCACCTAGTAAGCACTC................................................................................................. 19 0 3 0.33 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTACGCACTCC................................................................................................ 22 2 3 0.33 1 0 0 0 0 1 0
.............................................................TTGGCACCTAGTAAGCACTCT................................................................................................ 21 1 4 0.25 1 0 1 0 0 0 0
............................................................CTTGTCACCTAGTAAGCACTCA................................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0
............................................................CTTGGCACCTAGTAAGC..................................................................................................... 17 0 4 0.25 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTGAGCACTC................................................................................................. 21 1 4 0.25 1 1 0 0 0 0 0
............................................................CTTGGCACCTGGTAAGCACTCATT.............................................................................................. 24 2 4 0.25 1 1 0 0 0 0 0
............................................................CTTGTCACCTAGTAAGCACTC................................................................................................. 21 1 4 0.25 1 1 0 0 0 0 0
............................................................CTTGGCATCTAGTAAGCACTC................................................................................................. 21 1 9 0.22 2 0 2 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACA.................................................................................................. 20 1 5 0.20 1 0 1 0 0 0 0
.............................................................TTGGCACCTAGTAAGCACTCG................................................................................................ 21 1 5 0.20 1 0 1 0 0 0 0
............................................................CTTGGCACCTTGTAAGCACTC................................................................................................. 21 1 5 0.20 1 0 0 0 1 0 0
............................................................CTTGGCACCTAGTAAGCACTTA................................................................................................ 22 1 5 0.20 1 1 0 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACC.................................................................................................. 20 1 6 0.17 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCTTT.............................................................................................. 24 2 6 0.17 1 0 1 0 0 0 0
............................................................CTTTGCACCTAGTAAGCACTCT................................................................................................ 22 2 6 0.17 1 0 0 1 0 0 0
............................................................CTTGGCACTTAGTAAGCACTC................................................................................................. 21 1 12 0.17 2 1 1 0 0 0 0
............................................................CTTGACACCTAGTAAGCACTC................................................................................................. 21 1 6 0.17 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCATT.................................................................................................. 20 1 13 0.15 2 0 1 0 0 1 0
.................................................................................................GTGCCTGCTATGTGCCAGGCA............................................................ 21 0 7 0.14 1 1 0 0 0 0 0
............................................................CTTGGCATCTAGTAAGCACTCA................................................................................................ 22 1 8 0.13 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCTGAAA............................................................................................ 26 3 8 0.13 1 0 0 0 0 0 1
.............................................................TTGGCACCTGGTAAGCACTC................................................................................................. 20 1 8 0.13 1 0 0 0 1 0 0
............................................................CTTGGCACCTAGTAAGCACTCAAAA............................................................................................. 25 2 17 0.12 2 0 1 0 1 0 0
............................................................CTTGGCACCTAGTAGGCACTC................................................................................................. 21 1 17 0.12 2 1 1 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGCATTAG........................................................ 26 2 9 0.11 1 1 0 0 0 0 0
............................................................CTTGGCACCTAGTAAGCATTCA................................................................................................ 22 1 9 0.11 1 0 1 0 0 0 0
...................................................................CCTAGTAAGCACTCA................................................................................................ 15 0 20 0.10 2 0 0 2 0 0 0
............................................................CTTGGCACCTGGTAAGCAC................................................................................................... 19 1 20 0.10 2 2 0 0 0 0 0
............................................................CTGGGCACCTAGTAAGCACTCA................................................................................................ 22 1 10 0.10 1 0 0 0 0 1 0
............................................................CTTGGCACCTGGTAAGCAATCA................................................................................................ 22 2 11 0.09 1 0 0 0 1 0 0
............................................................CTTGGCACCTAGTAAG...................................................................................................... 16 0 11 0.09 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCAG................................................................................................... 19 1 11 0.09 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAGGCACTCA................................................................................................ 22 1 13 0.08 1 0 1 0 0 0 0
............................................................CTTGGCACCTGGTAAGCACTCTTT.............................................................................................. 24 3 13 0.08 1 0 0 0 1 0 0
............................................................CTTGGCACCTAGTAAGCACTCAAC.............................................................................................. 24 2 16 0.06 1 0 1 0 0 0 0
.............................................................TTGGCACCTGGTAAGCACTCT................................................................................................ 21 2 16 0.06 1 0 0 0 1 0 0
............................................................CTTGGCACCTAGTAAGCGCTCT................................................................................................ 22 2 18 0.06 1 1 0 0 0 0 0
............................................................CTTGGCATCTAGTAAGCACT.................................................................................................. 20 1 19 0.05 1 0 1 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGCAAA.......................................................... 24 2 20 0.05 1 0 1 0 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGA............................................................. 21 1 20 0.05 1 1 0 0 0 0 0
.............................................................CTGGCACCTAGTAAGCACTC................................................................................................. 20 1 20 0.05 1 0 0 1 0 0 0
................................................................................................AGTGCCTGCTATGTGCCAGGAA............................................................ 22 1 20 0.05 1 0 1 0 0 0 0
............................................................CTTGGCACCTAGTAAGCACTCCA............................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AACtCtCgtCCCggggACggAAggAACgAgtggAgACAtAggggtCgtggAtCtAgtCACgAACCgtggAtCAttCgtgAgtCAtAtAtgAACAACtCACggACgAtACACggtCCgtAACACgACtCCCgAAACtCCCCtAggtCtCCAtttgtCgAgAttgAgAgtttCtCgAAtC

************************************************.....................................................................................********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes
................................................GGATCTAGTCACGAA................................................................................................................... 15 0 20 0.05 1 1

Generated: 09/01/2015 at 11:34 AM