ID:

ssc-mir-124a-1

 Coordinate:

chr4:76136453-76136557 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.4 -34.3 -34.3
mature

  1. ssc-mir-124a-2  chr14:14443016-14443037 -
  2. ssc-mir-124a-1  chr4:76136478-76136499 -
  3. JH118951-1:125813-125834 -
star

  1. ssc-mir-124a-2  chr14:14443055-14443076 -
  2. ssc-mir-124a-1  chr4:76136515-76136536 -
  3. JH118951-1:125850-125871 -

Sense Strand Reads

AGGGCAGAAGGAGAAGTGTGGCATTCGCAATGGGTCAGTTACTTTCCGGATCAAGACCAGACTCTGCCCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGCCTACGGCTGCACTTGAAGGACACTAGAGCGTCTTAGAATAAGAAAGTGCAAAAGGCACTTGCAAGG

********************************************************..((.((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))).))....************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR066809

ovary		 SRR139075

testes		 SRR139076

testes
............................................................................................................TAAGGCACGCGGTGAATGCCAA........................................................................... 22 0 3 297.33 892 435 422 30 5
............................................................................................................TAAGGCACGCGGTGAATGCCA............................................................................ 21 0 3 181.00 543 262 271 10 0
............................................................................................................TAAGGCACGCGGTGAATGCCAT........................................................................... 22 1 3 89.67 269 127 139 3 0
............................................................................................................TAAGGCACGCGGTGAATGC.............................................................................. 19 0 3 50.67 152 73 72 7 0
............................................................................................................TAAGGCACGCGGTGAATGCCAG........................................................................... 22 1 3 19.67 59 30 29 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGC.............................................................................. 20 0 3 17.33 52 23 29 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAAT.......................................................................... 23 1 3 14.00 42 18 22 0 2
............................................................................................................TAAGGCACGCGGTGAATGCAA............................................................................ 21 1 3 13.67 41 22 19 0 0
............................................................................................................TAAGGCACGCGGTGAATGA.............................................................................. 19 1 3 13.67 41 20 21 0 0
............................................................................................................TAAGGCACGCGGTGAATGCA............................................................................. 20 1 3 12.00 36 17 19 0 0
............................................................................................................TAAGGCACGCGGTGAATGCC............................................................................. 20 0 3 10.67 32 13 19 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCA............................................................................ 20 0 3 10.33 31 15 16 0 0
............................................................................................................TAAGGCACGCGGTGAATG............................................................................... 18 0 3 10.00 30 15 9 5 1
............................................................................................................TAAGGCACGCGGTGAATGCCAAA.......................................................................... 23 1 3 9.00 27 9 17 0 1
............................................................................................................TAAGGCACGCGGTGAATGCCATT.......................................................................... 23 2 3 8.33 25 15 10 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCCA............................................................................ 22 0 3 7.00 21 13 8 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCCAA........................................................................... 23 0 3 6.67 20 11 9 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGA.............................................................................. 20 1 3 5.67 17 6 11 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCAA........................................................................... 21 0 3 5.00 15 6 9 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCT............................................................................ 21 1 3 4.33 13 4 9 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCATA.......................................................................... 23 2 3 3.67 11 3 8 0 0
............................................................................................................TAAGGCACGCGGTGAATGT.............................................................................. 19 1 3 3.33 10 6 4 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAGA.......................................................................... 23 2 3 3.00 9 8 1 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCCAT........................................................................... 23 1 3 3.00 9 4 5 0 0
...........................................................................................................TTAAGGCACGCGGTGAATG............................................................................... 19 0 3 2.67 8 7 1 0 0
............................................................................................................TGAGGCACGCGGTGAATGCCA............................................................................ 21 1 3 2.33 7 5 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAAG.......................................................................... 23 0 3 2.00 6 6 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGTCA............................................................................ 21 1 3 2.00 6 4 2 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCA............................................................................. 21 1 3 2.00 6 2 4 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGT.............................................................................. 20 1 3 1.67 5 2 3 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCG............................................................................ 21 1 3 1.67 5 4 1 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCAT........................................................................... 21 1 3 1.67 5 4 1 0 0
............................................................................................................TGAGGCACGCGGTGAATGCCAA........................................................................... 22 1 3 1.67 5 3 2 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCAA............................................................................ 22 1 3 1.33 4 3 1 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCC............................................................................. 21 0 3 1.33 4 2 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAGT.......................................................................... 23 2 3 1.33 4 0 4 0 0
............................................................................................................TAAGGCACGCGGTGAATGTCAA........................................................................... 22 1 3 1.33 4 2 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAAGA......................................................................... 24 0 3 1.33 4 3 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGCAG............................................................................ 21 2 3 1.33 4 1 3 0 0
............................................................................................................TAAGGCACGCGGTGAATGCAT............................................................................ 21 2 5 1.20 6 2 4 0 0
............................................................................................................TAAGGCACGCAGTGAATGCCA............................................................................ 21 1 3 1.00 3 2 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGAAA............................................................................ 21 2 4 1.00 4 3 1 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCAAT.......................................................................... 22 1 3 1.00 3 3 0 0 0
............................................................................................................TAAGGCACGCGGCGAATGCCAA........................................................................... 22 1 3 1.00 3 0 1 0 2
............................................................................................................TAAGGCACGCGGTGAATGCCGT........................................................................... 22 2 4 0.75 3 3 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAAC.......................................................................... 23 1 3 0.67 2 2 0 0 0
............................................................................................................TAAGGCACGCCGTGAATGCCA............................................................................ 21 1 3 0.67 2 2 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAATT......................................................................... 24 2 3 0.67 2 1 1 0 0
............................................................................................................TTAGGCACGCGGTGAATGCCAA........................................................................... 22 1 3 0.67 2 2 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGTA............................................................................. 20 2 3 0.67 2 1 1 0 0
............................................................................................................TAAGGCATGCGGTGAATGCCAT........................................................................... 22 2 3 0.67 2 0 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGATA............................................................................ 21 2 3 0.67 2 0 2 0 0
............................................................................................................TAAGGCACGCGGGGAATGCCA............................................................................ 21 1 3 0.67 2 1 0 1 0
...........................................................................................................CTAAGGCACGCGGTGAATGCCAA........................................................................... 23 1 3 0.67 2 2 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGACAT........................................................................... 22 2 3 0.67 2 0 2 0 0
............................................................................................................TGAGGCACGCGGTGAATGCCAT........................................................................... 22 2 3 0.67 2 0 2 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGAGA............................................................................ 22 2 3 0.67 2 1 1 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGTA............................................................................. 21 2 3 0.67 2 0 2 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCAAA.......................................................................... 22 1 3 0.67 2 1 1 0 0
............................................................................................................TAAGGCACGCGGTCAATGCCAT........................................................................... 22 2 3 0.67 2 1 1 0 0
............................................................................................................TGAGGCACGCGGTGAATGCCAAA.......................................................................... 23 2 3 0.67 2 2 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCACA.......................................................................... 23 2 3 0.67 2 0 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGTC............................................................................. 20 1 3 0.67 2 2 0 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCCATT.......................................................................... 24 2 3 0.67 2 0 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGCT............................................................................. 20 1 3 0.67 2 1 1 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCAG............................................................................ 22 2 3 0.67 2 1 1 0 0
............................................................................................................TAAGGCACGCGGCGAATGCCA............................................................................ 21 1 3 0.67 2 1 1 0 0
............................................................................................................TAAGGCACGCGGTAAATGCCA............................................................................ 21 1 3 0.67 2 1 1 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCAG........................................................................... 21 1 3 0.67 2 0 2 0 0
.......................................................................CGTGTTCACAGCGGACCTTGAT................................................................................................................ 22 0 3 0.67 2 0 2 0 0
............................................................................................................TAAGGCACGCGGTGAATGAA............................................................................. 20 2 4 0.50 2 1 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGCTT............................................................................ 21 2 4 0.50 2 1 1 0 0
............................................................................................................TGAGGCACGCGGTGAATGCAA............................................................................ 21 2 4 0.50 2 0 2 0 0
............................................................................................................TAAGGCACGCGGTTAATGCCA............................................................................ 21 1 3 0.33 1 1 0 0 0
...........................................................................................................TTAAGGCAAGCGGTGAATGC.............................................................................. 20 1 3 0.33 1 0 1 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGCCAG........................................................................... 23 1 3 0.33 1 1 0 0 0
.......................................................................CGTGTTCACAGCGGACCTTG.................................................................................................................. 20 0 3 0.33 1 1 0 0 0
............................................................................................................TAAGACACGCGGTGAATGC.............................................................................. 19 1 3 0.33 1 0 0 1 0
............................................................................................................TAAGGCACGCGGTGAATACCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACACGGTGAATGCCAA........................................................................... 22 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACACGGTGAATGCCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGAGGTGAATGCCAA........................................................................... 22 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGTGGTGAATGCCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGGGAATGCCAA........................................................................... 22 1 3 0.33 1 1 0 0 0
...........................................................................................................TTAAGGCACGCGGTGAAT................................................................................ 18 0 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCC............................................................................ 21 1 3 0.33 1 0 0 1 0
...........................................................................................................TTAAGGCACGCGGTGAATGCG............................................................................. 21 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCGA............................................................................ 21 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGCAAA........................................................................... 22 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCATGCGGTGAATGCCA............................................................................ 21 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCTGTGAATGCCA............................................................................ 21 1 3 0.33 1 1 0 0 0
............................................................................................................TGAGGCACGCGGTGAATGCC............................................................................. 20 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCAGGCGGTGAATGCCA............................................................................ 21 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGTCG............................................................................ 21 2 3 0.33 1 1 0 0 0
............................................................................................................CAAGGCACGCGGTGAATGCCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATTA.............................................................................. 19 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGCGAATGCCAT........................................................................... 22 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCAGTGAATGCCAA........................................................................... 22 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCATGCGGTGAATGTCAA........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAACGCCA............................................................................ 21 1 3 0.33 1 0 1 0 0
.......................................................................CGTGTTCACAGCGGACCTTGA................................................................................................................. 21 0 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGGATGCCAAG.......................................................................... 23 1 3 0.33 1 0 1 0 0
............................................................................................................TACGGCACGCGGTGAATGCCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCTG............................................................................ 21 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAGAA......................................................................... 24 2 3 0.33 1 0 1 0 0
.............................................................................................................GAGGCACGCGGTGAATGCCAA........................................................................... 21 1 3 0.33 1 1 0 0 0
............................................................................................................AAAGGCACGCGGTGAATGCCA............................................................................ 21 1 3 0.33 1 1 0 0 0
..........................................................................................................CTTAAGGCACGCGGTGAATGT.............................................................................. 21 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAAAGC.............................................................................. 19 1 3 0.33 1 0 1 0 0
...........................................................................................................CTAAGGCACGCGGTGAATGC.............................................................................. 20 1 3 0.33 1 1 0 0 0
............................................................................................................TAGGGCACGCGGTGAATGCA............................................................................. 20 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATTCCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGATGAATGCCAT........................................................................... 22 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACTCGGTGAATGCCA............................................................................ 21 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCTAT.......................................................................... 23 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATTCAA............................................................................ 21 2 3 0.33 1 1 0 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGTCA............................................................................ 22 1 3 0.33 1 1 0 0 0
............................................................................................................TATGGCACGCGGTGAATGCCAAT.......................................................................... 23 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGAGA............................................................................ 21 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGTCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCCA........................................................................... 22 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAAAC......................................................................... 24 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCTAA........................................................................... 22 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGGATGCCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGCTA............................................................................ 21 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTTAATGCCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGTC............................................................................. 21 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAA................................................................................. 16 0 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCATG.......................................................................... 23 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCGCGCGGTGAATGCCAT........................................................................... 22 2 3 0.33 1 1 0 0 0
.............................................................................................................AAGGCACGCGGTGAATGC.............................................................................. 18 0 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGATGAATGCCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
.........................................................................................................CGCTAAGGCACGCGGTGAATGCCAA........................................................................... 25 3 3 0.33 1 0 1 0 0
............................................................................................................TAAGACACGCGGTGAATGCA............................................................................. 20 2 3 0.33 1 0 1 0 0
.........................................................................TGTTCACAGCGGACCTTGATTT.............................................................................................................. 22 0 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGTTGAATGCCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
.............................................................................................................AAGGCACGCGGTGAATGCTA............................................................................ 20 1 3 0.33 1 0 1 0 0
.............................................................................................................AAGGCACGCGGTGAATGCA............................................................................. 19 1 3 0.33 1 0 1 0 0
.............................................................................................................AAGGCACGCGGTGAATGCCATT.......................................................................... 22 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGTGGTGAATGCCAAT.......................................................................... 23 2 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTAAATGCCAA........................................................................... 22 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAGTGCCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGTGGTGAATGCCA............................................................................ 21 1 3 0.33 1 0 1 0 0
............................................................................................................TGAGGCACGCGGTGAATGC.............................................................................. 19 1 3 0.33 1 1 0 0 0
...........................................................................................................CTAAGGCACGCGGTGAATGT.............................................................................. 20 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGGCAA........................................................................... 22 1 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGCCAAGT......................................................................... 24 1 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGTT............................................................................. 20 2 3 0.33 1 0 1 0 0
...........................................................................................................TAAAGGCACGCGGTGAATGCCA............................................................................ 22 1 3 0.33 1 1 0 0 0
.............................................................................................................AAGGCACGCGGTGAATGCC............................................................................. 19 0 3 0.33 1 1 0 0 0
............................................................................................................TAAGGCACGCGGCGAATGCCAAT.......................................................................... 23 2 3 0.33 1 0 1 0 0
............................................................................................................TAAGGCACGCGATGAATGC.............................................................................. 19 1 4 0.25 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGAAG............................................................................ 21 3 13 0.23 3 3 0 0 0
............................................................................................................TAAGGCACGCGGTTAATGCT............................................................................. 20 2 5 0.20 1 0 1 0 0
............................................................................................................TGAGGCACGCGGTGAATGCA............................................................................. 20 2 5 0.20 1 0 1 0 0
...........................................................................................................TTAAGGCACGCTGTGAATGT.............................................................................. 20 2 5 0.20 1 0 1 0 0
............................................................................................................TAAGGCACGCGGCGAATGT.............................................................................. 19 2 6 0.17 1 0 0 1 0
...........................................................................................................TTAAGGCACGGGGTGAATGCA............................................................................. 21 2 6 0.17 1 0 1 0 0
...........................................................................................................TTCAGGCACGCGGTGAATGA.............................................................................. 20 2 6 0.17 1 1 0 0 0
...........................................................................................................TTAAGGCACGCGGTGAATGAAG............................................................................ 22 3 7 0.14 1 0 1 0 0
............................................................................................................TAAGGCACGCGGTGAATGTAG............................................................................ 21 3 7 0.14 1 1 0 0 0
...........................................................................................................GTGGGGCACGCGGTGAATGCCA............................................................................ 22 3 9 0.11 1 1 0 0 0
............................................................................................................TAAGGCACGCGGTGAATGAGG............................................................................ 21 3 13 0.08 1 1 0 0 0

Anti-sense strand reads

TCCCGTCTTCCTCTTCACACCGTAAGCGTTACCCAGTCAATGAAAGGCCTAGTTCTGGTCTGAGACGGGAGGCACAAGTGTCGCCTGGAACTAAATTACAGTATGTTAATTCCGTGCGCCACTTACGGTTCTCGCCTCGGATGCCGACGTGAACTTCCTGTGATCTCGCAGAATCTTATTCTTTCACGTTTTCCGTGAACGTTCC

************************************************************..((.((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))).))....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary		 SRR066810

testes		 SRR1274763

ovary
......................................................................GGCACAAGTGTCGCCTGGAAC.................................................................................................................. 21 0 3 2.00 6 5 0 1 0
......................................................................GGCACAAGTGTCGCCTGGAACT................................................................................................................. 22 0 3 1.00 3 3 0 0 0
......................................................................GGCACAAGTGTCGCCTGGAA................................................................................................................... 20 0 3 0.67 2 2 0 0 0
......................................................................CGCACAAGTGTCGCCTGGAACT................................................................................................................. 22 1 3 0.67 2 0 0 0 2
.....................................................................AGGCACAAGTGTCGCCTGGAACT................................................................................................................. 23 0 3 0.33 1 0 1 0 0
......................................................................CGCACAAGTGTCGCCTGGAAC.................................................................................................................. 21 1 3 0.33 1 0 0 1 0
.....................................................................TGGCACAAGTGTCGCCTGGAACT................................................................................................................. 23 1 3 0.33 1 1 0 0 0
.....................................................................AGGCACAAGTGTCGCCTGGAAC.................................................................................................................. 22 0 3 0.33 1 0 1 0 0
.....................................................................TGGCACAAGTGTCGCCTGGAAC.................................................................................................................. 22 1 3 0.33 1 1 0 0 0

Generated: 09/01/2015 at 11:36 AM