ID:

ssc-mir-1249-1

 Coordinate:

chr5:1499712-1499793 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.1 -42.8
mature

  1. ssc-mir-1249-1  chr5:1499762-1499783 +
  2. GL894109-2:9419-9440 +
star

  1. ssc-mir-1249-1  chr5:1499725-1499749 +
  2. GL894109-2:9382-9406 +

Sense Strand Reads

GATGGGGCTCCCGAAGTCTCAGTCCCGGCTCGTCTTGTTCCTCAGATTCTTGTTTGCATGGGGAGGAGGGAGGAGATGGGCCAAgttccctctgcctggaacgcccttcccccccttcttcacctagcgaactcctactcgtccttcaagacccagcttgagcggcgcctcctccaggaagc

************************************************...((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..)))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR066810

testes		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary
....................................................................................................ACGCCCTTCCCCCCCTTCTTCA............................................................ 22 0 2 102.50 205 148 38 11 3 5
....................................................................................................ACGCCCTTCCCCCCCTTCTTC............................................................. 21 0 2 41.00 82 47 23 4 4 4
....................................................................................................ACGCCCTTCCCCCCCTTCTT.............................................................. 20 0 2 12.00 24 19 3 1 0 1
....................................................................................................ACGCCCTTCCCCCCCTTCTTCT............................................................ 22 1 2 9.50 19 9 6 1 2 1
....................................................................................................ACGCCCTTCCCCCCCTTCT............................................................... 19 0 2 8.00 16 5 10 1 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCAT........................................................... 23 1 2 6.00 12 8 3 0 0 1
....................................................................................................ACGCCCTTCCCCCCCTTCTTA............................................................. 21 1 2 3.50 7 5 0 0 2 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCAA........................................................... 23 1 2 2.50 5 3 1 0 1 0
...............................................................AGGAGGGAGGGGATGGGCCAAGTT............................................................................................... 24 1 2 2.50 5 4 1 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTT............................................................. 21 1 2 2.50 5 2 2 0 1 0
....................................................................................................ACGCCCTTCTCCCCCTTCTTCA............................................................ 22 1 2 2.00 4 3 0 1 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTAA............................................................ 22 1 2 1.00 2 2 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCT.................................................................. 16 0 2 1.00 2 1 1 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCAG........................................................... 23 1 2 1.00 2 0 0 0 0 2
...................................................................................................CACGCCCTTCCCCCCCTTCTTCA............................................................ 23 1 2 1.00 2 2 0 0 0 0
...................................................................................................AACGCCCTTCCCCCCCTTCTTCA............................................................ 23 0 2 1.00 2 2 0 0 0 0
...................................................................................................AACGCCCTTCCCCCCCTTCTTC............................................................. 22 0 2 1.00 2 1 1 0 0 0
....................................................................................................ACGCCCTTCCTCCCCTTCTTC............................................................. 21 1 2 1.00 2 0 0 1 1 0
....................................................................................................ACGCCCTTTCCCCCCTTCTTCA............................................................ 22 1 3 0.67 2 1 0 1 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTTT............................................................ 22 2 5 0.60 3 1 2 0 0 0
..........................................................................................................................CCTGGCGAACTCCTACTCGTCCTTCAAGACCC............................ 32 1 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCTCCCCTTCT............................................................... 19 1 6 0.50 3 1 0 2 0 0
....................................................................................................ACGCCCTTCTCCCCCTTCTTCAA........................................................... 23 2 2 0.50 1 0 0 0 1 0
....................................................................................................TCGCCCTTCCCCCCCTTCTTCA............................................................ 22 1 2 0.50 1 0 0 0 1 0
...................................................................................................ACCGCCCTTCCCCCCCTTCTTC............................................................. 22 1 2 0.50 1 0 0 1 0 0
...............................................................AGGAGGGAGGAGATGGGCCAAGTTC.............................................................................................. 25 0 2 0.50 1 0 1 0 0 0
...............................................................AGGAGGGAGGGGATGGGCCAAGTTC.............................................................................................. 25 1 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTC................................................................ 18 0 2 0.50 1 1 0 0 0 0
......................................................................................................GCCCTTCCCCCCCTTCTTCA............................................................ 20 0 2 0.50 1 1 0 0 0 0
.....................................................................................................CGCCCTTCCCCCCCTTCTTCAT........................................................... 22 1 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCGA........................................................... 23 2 2 0.50 1 0 0 1 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTAAT........................................................... 23 2 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTTA............................................................ 22 1 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCAAG.......................................................... 24 2 2 0.50 1 0 0 0 1 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTG............................................................. 21 1 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCTCCCCCTTCTTC............................................................. 21 1 2 0.50 1 1 0 0 0 0
...................................................................................................AACGCCCTTCCCCCCCTTCTTCT............................................................ 23 1 2 0.50 1 0 1 0 0 0
....................................................................................................ACGCCCTTCCTCCCCTTCTTCAA........................................................... 23 2 2 0.50 1 0 0 1 0 0
...............................................................AGGAGGGAGGAGATGGGCCAAGTTCT............................................................................................. 26 1 2 0.50 1 0 0 0 1 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTAT............................................................ 22 2 2 0.50 1 0 1 0 0 0
...............................................................AGGAGGGAGGGGATGGGCCAAGT................................................................................................ 23 1 2 0.50 1 1 0 0 0 0
...................................................................................................CACGCCCTTCCCCCCCTTCTTA............................................................. 22 2 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCAAT.......................................................... 24 2 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCTTTCTTCA............................................................ 22 1 2 0.50 1 0 0 1 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTCTT........................................................... 23 2 2 0.50 1 0 1 0 0 0
.....................................................................................................CGCCCTTCCCCCCCTTCTTC............................................................. 20 0 2 0.50 1 1 0 0 0 0
....................................................................................................AAGCCCTTCCCCCCCTTCTTCA............................................................ 22 1 2 0.50 1 0 1 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTTAAG........................................................... 23 2 2 0.50 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCTCTTCTTC............................................................. 21 1 2 0.50 1 0 0 1 0 0
....................................................................................................ACGCCCTTCCCCTTCTTCTTCA............................................................ 22 2 5 0.40 2 2 0 0 0 0
...............................................................AGGAGGGAGGAGATGGGCCA................................................................................................... 20 0 3 0.33 1 0 0 1 0 0
...............................................................AGGAGGGAGGAGATGGGCCAATTA............................................................................................... 24 2 3 0.33 1 0 0 0 1 0
....................................................................................................ACGCCCTCCCCCCCCTTCTTC............................................................. 21 1 3 0.33 1 0 1 0 0 0
....................................................................................................ACGCCCTTTTCCCCCTTCTTCA............................................................ 22 2 4 0.25 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTCTAT............................................................. 21 2 4 0.25 1 0 1 0 0 0
....................................................................................................ACGCCCTTCCCTTCCTTCTTCA............................................................ 22 2 4 0.25 1 0 0 1 0 0
....................................................................................................ACGCCCTTCCCTCCCTTCTTC............................................................. 21 1 5 0.20 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCTCCCCTTCTTCT............................................................ 22 2 8 0.13 1 1 0 0 0 0
....................................................................................................ACGCCCTTCCCCCCCTTT................................................................ 18 1 12 0.08 1 0 0 0 1 0
....................................................................................................ACGCCCTTCCTCCCCTTCTTT............................................................. 21 2 14 0.07 1 1 0 0 0 0
....................................................................................................ACGTCATTCCCCCCCTTCT............................................................... 19 2 15 0.07 1 0 0 1 0 0
....................................................................................................ACGCCCTTCCCCTTCTTCTTC............................................................. 21 2 17 0.06 1 1 0 0 0 0

Anti-sense strand reads

CTACCCCGAGGGCTTCAGAGTCAGGGCCGAGCAGAACAAGGAGTCTAAGAACAAACGTACCCCTCCTCCCTCCTCTACCCGGTTgttGGGtGtgGGtggTTGgGGGttGGGGGGGttGttGTGGtTgGgTTGtGGtTGtGgtGGttGTTgTGGGTgGttgTgGggGgGGtGGtGGTggTTgG

*********************************************...((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..)))))).....************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR139076

testes		 SRR139075

testes
............................GAGCAGAACAAGGAGTCTAAGAACAAACGT............................................................................................................................ 30 0 2 1.00 2 2 0
...........................CGAGCAGAACAAGGAGTCTAAGAACAA................................................................................................................................ 27 0 2 0.50 1 1 0
...............................................................................................................................................................CGCGCCGCGGAGCAGGTC..... 18 2 20 0.05 1 0 1

Generated: 09/01/2015 at 11:37 AM