ID:

ssc-mir-106a

 Coordinate:

chrX:126200183-126200263 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.8 -32.7 -32.7
mature

  1. ssc-mir-17  chr11:66610070-66610091 +
  2. ssc-mir-106a  chrX:126200229-126200250 -
star

Sense Strand Reads

GAGGACGGAGCAGAAGAGGTGGTGGAAGGCAGTTTTGCTACGGGAATAGGCCTTGGCCGTGTAAAAGTGCTTACAGTGCAGGTAGCTTTTTGAGATCTACTGCAATGCAAGCACTTCTTACATTACCATGGTGATTTAATCAATGGCTACTGAGAACTGTAGTTTGTGCATAATTAAGCTG

************************************************.(((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).)))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR066810

testes		 SRR066809

ovary		 SRR139075

testes		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
..............................................................CAAAGTGCTTACAGTGCAGGTAGAAT............................................................................................. 26 3 3 51.33 154 77 76 1 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAG................................................................................................ 22 0 2 51.00 102 35 32 31 4 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTAG................................................................................................ 23 0 1 32.00 32 4 6 15 4 2 1
..............................................................AAAAGTGCTTACAGTGCAGGT.................................................................................................. 21 0 1 29.00 29 1 0 26 2 0 0
..................................................................GTGCTTACAGTGCAGGTAG................................................................................................ 19 0 2 21.00 42 19 23 0 0 0 0
...............................................................AAAGTGCTGACAGTGCAGATA................................................................................................. 21 2 8 19.25 154 75 73 6 0 0 0
..............................................................CAAAGTGCTTACAGTGCAGGTAGC............................................................................................... 24 1 2 16.00 32 13 16 2 0 1 0
...............................................................AAAGTGCTTACAGTGCAGGTA................................................................................................. 21 0 2 14.50 29 4 14 10 1 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTAT................................................................................................ 23 1 1 12.00 12 1 1 6 4 0 0
...............................................................AAAGTGCTTACAGTGCAGGT.................................................................................................. 20 0 2 11.00 22 0 2 20 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTA................................................................................................. 22 0 1 11.00 11 3 1 7 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGTAG................................................................................................ 23 1 3 10.00 30 22 6 2 0 0 0
...................................................................TGCTTACAGTGCAGGTAG................................................................................................ 18 0 2 9.00 18 9 9 0 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTAGA............................................................................................... 24 1 1 7.00 7 4 1 2 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAT................................................................................................ 22 1 2 6.50 13 1 3 7 2 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAGA............................................................................................... 23 1 2 5.50 11 5 4 2 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAA................................................................................................ 22 1 2 4.50 9 0 0 9 0 0 0
..............................................................TAAAGTGCTGACAGTGCAGGTA................................................................................................. 22 2 4 4.25 17 7 10 0 0 0 0
..............................................................AAAAGTGCTGACAGTGCAGATA................................................................................................. 22 2 3 3.33 10 5 4 1 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTAA................................................................................................ 23 1 1 3.00 3 0 0 2 1 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAGC............................................................................................... 23 0 1 3.00 3 1 0 2 0 0 0
..............................................................TAAAGTGCTGACAGTGCAGGTAG................................................................................................ 23 2 4 2.75 11 5 6 0 0 0 0
..............................................................CAAAGTGCTTACAGTGCAGGTAGAT.............................................................................................. 25 2 3 2.67 8 4 4 0 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGTA................................................................................................. 22 1 3 2.67 8 2 3 3 0 0 0
................................................................AAGTGCTTACAGTGCAGGTAG................................................................................................ 21 0 2 2.50 5 2 2 0 1 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAGAAT............................................................................................. 25 2 1 2.00 2 1 1 0 0 0 0
.................................................................AGTGCTTACAGTGCAGGTAG................................................................................................ 20 0 2 2.00 4 2 1 1 0 0 0
...............................................................CAAGTGCTTACAGTGCAGGTAG................................................................................................ 22 1 2 2.00 4 1 2 1 0 0 0
..............................................................AAAAGTGCTTACAGTGCAG.................................................................................................... 19 0 1 2.00 2 0 0 1 1 0 0
....................................................................GCTTACAGTGCAGGTAG................................................................................................ 17 0 2 2.00 4 1 3 0 0 0 0
..............................................................CAAAGTGCTTACAGTGCAGGTAGTTT............................................................................................. 26 2 3 1.67 5 2 2 0 0 1 0
..................................................................GTGCTTACAGTGCAGGTAGA............................................................................................... 20 1 3 1.67 5 4 1 0 0 0 0
..................................................................GTGCTTACAGTGCAGGTA................................................................................................. 18 0 2 1.50 3 1 2 0 0 0 0
..............................................................AAAAGTGCTTACAGTACAGGTAG................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTT................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGG................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGCT.............................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................TACTGCAATGCAAGCACTTCTT.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..................................................................GTGCTTACAGTGCAGG................................................................................................... 16 0 2 1.00 2 0 2 0 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGTAGA............................................................................................... 24 2 3 1.00 3 3 0 0 0 0 0
................................................................AAGTGCTTACAGTGCAGGTAGAAT............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................AAAAGTGCTTATAGTGCAGGTAG................................................................................................ 23 1 2 1.00 2 0 2 0 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGGAG................................................................................................ 22 1 2 1.00 2 1 1 0 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAAA............................................................................................... 23 2 2 1.00 2 0 0 2 0 0 0
..............................................................AAAAGTGCTTACAGTGCGGGTAGA............................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.....................................................................CTTACAGTGCAGGTAG................................................................................................ 16 0 2 1.00 2 0 2 0 0 0 0
................................................................AAGTGCTTACAGTGCAGGTAGCA.............................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0
...............................................................AAAGTGCTTACAGTGCAG.................................................................................................... 18 0 2 1.00 2 0 0 2 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGTAGCA.............................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTAGAA.............................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..............................................................AAAGGTGCTTACAGTGCAGGT.................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0
...............................................................AAAGTGCTTACAGTGCAGG................................................................................................... 19 0 2 1.00 2 0 0 2 0 0 0
..............................................................CAAAGTGCTTACAGTGCAGGTAGATT............................................................................................. 26 2 2 1.00 2 0 2 0 0 0 0
...................................................................TGCTTACAGTGCAGGTA................................................................................................. 17 0 2 1.00 2 0 2 0 0 0 0
...............................................................AAAGTGCTGACAGTGCAGATAG................................................................................................ 22 2 4 1.00 4 2 2 0 0 0 0
..............................................................AAAAGTGCTGACAGTGCAGAT.................................................................................................. 21 2 7 0.57 4 0 4 0 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGTAGT............................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
..............................................................AAAAGTGCTTATAGTGCAGGTAGA............................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0
..............................................................CAAAGTGCTTACAGTGCAGGGAGC............................................................................................... 24 2 2 0.50 1 0 0 0 1 0 0
..................................................................GTGCTTACAGTGCAGGT.................................................................................................. 17 0 2 0.50 1 1 0 0 0 0 0
...............................................................AAAGTGCTTACAGTGCGGGT.................................................................................................. 20 1 2 0.50 1 0 0 1 0 0 0
..............................................................GAAAGTGCTTACAGTGCAGGTAG................................................................................................ 23 1 2 0.50 1 0 1 0 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTT................................................................................................. 21 1 2 0.50 1 0 0 1 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAGAA.............................................................................................. 24 2 2 0.50 1 0 1 0 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGTAT................................................................................................ 23 2 4 0.50 2 0 1 0 1 0 0
..................................................................GTGCTTACAGTGCAGGTAT................................................................................................ 19 1 2 0.50 1 0 1 0 0 0 0
..............................................................AAAAGTGCTTACAGTGCAGGA.................................................................................................. 21 1 2 0.50 1 0 0 1 0 0 0
...............................................................AAAGTGCTTACAGTGCAGTT.................................................................................................. 20 1 2 0.50 1 0 0 1 0 0 0
...............................................................AAAGTGCTTACAGTGCAGTTAG................................................................................................ 22 1 2 0.50 1 0 0 1 0 0 0
...............................................................AGAGTGCTTACAGTGCAGGTAG................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
..............................................................AAAAGTGCTCACAGTGCAGG................................................................................................... 20 1 2 0.50 1 0 0 1 0 0 0
................................................................AAGTGCTTACAGTGCAGGTAT................................................................................................ 21 1 2 0.50 1 0 0 1 0 0 0
..............................................................GAAAGTGCTTACAGTGCAGGTA................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
................................................................AAGTGCTTACAGTGCAGGTAGCCA............................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
..................................................................GTGCTTACAATGCAGGTAG................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0
...............................................................CAAGTGCTTACAGTGCAGGTA................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
...............................................................AAAGTGCTTACAGTGCAGGTAGG............................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0
..............................................................CAAAGTGCTTACAGTGCAGGTAGAATT............................................................................................ 27 3 3 0.33 1 1 0 0 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGT.................................................................................................. 21 1 3 0.33 1 0 0 1 0 0 0
.................................................................AGTGCTTACAGTGCAGGTAGA............................................................................................... 21 1 3 0.33 1 0 0 1 0 0 0
..............................................................AAAAGTGCTTATAGTGCAGGTAT................................................................................................ 23 2 3 0.33 1 0 0 1 0 0 0
......................................................................TTACAGTGCAGGTAG................................................................................................ 15 0 7 0.29 2 0 1 0 0 0 1
...............................................................CAAATGCTTACAGTGCAGGTAGA............................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
..............................................................TAAAGTGCTGACAGTGCAGGT.................................................................................................. 21 2 8 0.25 2 0 2 0 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGATA................................................................................................. 22 2 4 0.25 1 1 0 0 0 0 0
....................................................................GCTTACAGTGCAGGTAGA............................................................................................... 18 1 4 0.25 1 0 1 0 0 0 0
...................................................................TGCTTACAGTGCAGG................................................................................................... 15 0 4 0.25 1 0 1 0 0 0 0
..............................................................AGAAGTGCTTACAGTGCAGGTTT................................................................................................ 23 3 5 0.20 1 0 0 0 1 0 0
..............................................................TAAAGTGCTGACAGTGCAGCTA................................................................................................. 22 3 20 0.20 4 1 3 0 0 0 0
...............................................................AAAGGGCTTACAGTGCAGGTAAA............................................................................................... 23 3 6 0.17 1 0 0 1 0 0 0
..............................................................TAAAGTGCTGACAGTGCAGGTAGA............................................................................................... 24 3 6 0.17 1 0 1 0 0 0 0
..............................................................GAAAGTGCTGACAGTGCAGATA................................................................................................. 22 3 20 0.15 3 0 3 0 0 0 0
..............................................................TAAAGTGCTGACAGTGCAGGTAT................................................................................................ 23 3 7 0.14 1 0 0 1 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGGGAT................................................................................................ 23 3 8 0.13 1 0 0 1 0 0 0
.............................................................TTAAAGTGCTGACAGTGCAGATA................................................................................................. 23 3 8 0.13 1 0 0 1 0 0 0
.........GCAGAAGAGATCGTGGACGGCA...................................................................................................................................................... 22 3 8 0.13 1 0 0 1 0 0 0
...............................................................AAAGTGCTGACAGTGCAGATAT................................................................................................ 22 3 20 0.05 1 0 1 0 0 0 0
..............................................................TAAAGTGCTTACAGTGCAGA................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CTCCTGCCTCGTCTTCTCCACCACCTTCCGTCAAAACGATGCCCTTATCCGGAACCGGCACATTTTCACGAATGTCACGTCCATCGAAAAACTCTAGATGACGTTACGTTCGTGAAGAATGTAATGGTACCACTAAATTAGTTACCGATGACTCTTGACATCAAACACGTATTAATTCGAC

***********************************************.(((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).)))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:45 AM