ID:

ssc-mir-105-1

 Coordinate:

chrX:141091501-141091581 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-51.4 -51.2 -51.2
mature

  1. ssc-mir-105-1  chrX:141091512-141091533 -
  2. ssc-mir-105-2  chrX:141093630-141093651 -
star

Sense Strand Reads

TATCTACTCCTATACACTGGATGTCAGCTCATGTTGCAGGACCTTCTGAGTGTGCATCGTAGTCAAATGCTCAGACTCCTGTGGTGGCTGCTCATGCACCACGGATGTTTGAGCATGTGCTACGGTGTCTACTTTTGCTACATTGCCGTCTACTTCTGGACCAAAGCCATTTGTTCCTGTA

***********************************((((........(((((.(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).))))))))))).)))))........))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066809

ovary
..............................................................TCAAATGCTCAGACTTCTGTGGT................................................................................................ 23 1 1 2.00 2 2 0
................................................................AAATGCTCAGACTCCTGTGGTGT.............................................................................................. 23 1 1 2.00 2 1 1
..................................................................................................CCACGGATGTTTGAGCATGTGT............................................................. 22 1 2 1.50 3 3 0
..................................................................................................CCACGGATGTTTGAGCATGTGC............................................................. 22 0 2 0.50 1 1 0

Anti-sense strand reads

ATAGATGAGGATATGTGACCTACAGTCGAGTACAACGTCCTGGAAGACTCACACGTAGCATCAGTTTACGAGTCTGAGGACACCACCGACGAGTACGTGGTGCCTACAAACTCGTACACGATGCCACAGATGAAAACGATGTAACGGCAGATGAAGACCTGGTTTCGGTAAACAAGGACAT

***********************************((((........(((((.(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).))))))))))).)))))........))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:46 AM