ID:

ssc-mir-1

 Coordinate:

chr17:69285393-69285500 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.7 -35.5 -35.1
mature

  1. ssc-mir-1  chr17:69285416-69285437 -
  2. chr6:99481985-99482006 +
star

Sense Strand Reads

CCGGGCCTCTGTGCAGGCTTCTTGGGGCCCCTCCCCGAGCCACGACTGGGCCGGTTGACGTACCTGCTTGGGGGACATACTTCTTTATGTGCCCATATGGACCTGCTAAGCTATGGAATGTAAAGAAGTATGTATTTCAGGCTGGGAACTCTCACCGGAAGAAGGGGCAGgGGGgggGgGGGGggGgggGGGGGACAGACAGACAGGC

***********************************************************((.(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).))).)).********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR139076

testes		 SRR066809

ovary		 SRR066810

testes		 SRR1274764

testes		 SRR1274763

ovary
.................................................................................................................TGGAATGTAAAGAAGTATGTAT......................................................................... 22 0 2 6148.50 12297 7492 4054 496 209 36 10
.................................................................................................................TGGAATGTAAAGAAGTATGT........................................................................... 20 0 2 286.00 572 283 170 99 18 0 2
.................................................................................................................TGGAATGTAAAGAAGTATGTAC......................................................................... 22 1 2 216.00 432 285 104 28 13 1 1
.................................................................................................................TGGAATGTAAAGAAGTATGTA.......................................................................... 21 0 2 212.50 425 266 118 31 10 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAA......................................................................... 22 1 2 204.00 408 189 181 18 18 0 2
.................................................................................................................TGGAATGTAAAGAAGTATGTATT........................................................................ 23 0 2 135.50 271 113 75 63 20 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTAT......................................................................... 21 0 2 80.50 161 108 48 5 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATG............................................................................ 19 0 2 57.50 115 90 20 4 1 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATA........................................................................ 23 1 2 40.50 81 40 31 4 5 0 1
.................................................................................................................TGGAATGTAAAGAGGTATGTAT......................................................................... 22 1 2 25.50 51 38 12 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTA.............................................................................. 17 0 3 24.33 73 56 14 0 0 3 0
.................................................................................................................TGGAATGTAAAGAAGTATGTACT........................................................................ 23 1 2 22.00 44 3 1 29 11 0 0
...................................................................................................................GAATGTAAAGAAGTATGTAT......................................................................... 20 0 2 21.00 42 35 5 0 2 0 0
.................................................................................................................TGGAATGTAAGGAAGTATGTAT......................................................................... 22 1 2 17.50 35 24 9 1 1 0 0
.................................................................................................................TGGGATGTAAAGAAGTATGTAT......................................................................... 22 1 2 15.50 31 19 12 0 0 0 0
.................................................................................................................TGGAATGTAGAGAAGTATGTAT......................................................................... 22 1 3 15.33 46 30 13 3 0 0 0
..................................................................................................................TGAATGTAAAGAAGTATGTAT......................................................................... 21 1 2 13.50 27 21 6 0 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGTAT......................................................................... 22 1 2 13.50 27 16 11 0 0 0 0
.................................................................................................................TGGCATGTAAAGAAGTATGTAT......................................................................... 22 1 2 11.50 23 17 6 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTACC........................................................................ 23 2 2 10.50 21 8 3 5 5 0 0
.................................................................................................................TTGAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 10.50 21 13 8 0 0 0 0
................................................................................................................CTGGAATGTAAAGAAGTATGTAT......................................................................... 23 1 2 9.50 19 12 7 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGCATGTAT......................................................................... 22 1 2 9.00 18 14 4 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTACGTAT......................................................................... 22 1 2 9.00 18 4 12 1 1 0 0
.................................................................................................................TGTAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 9.00 18 10 8 0 0 0 0
..............................................................................................................CGCTGGAATGTAAAGAAGTATGGA.......................................................................... 24 3 5 7.40 37 0 0 24 13 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTCT......................................................................... 22 1 2 7.00 14 6 8 0 0 0 0
.................................................................................................................TGGAATGTACAGAAGTATGTAT......................................................................... 22 1 2 6.50 13 7 6 0 0 0 0
.................................................................................................................TGGAGTGTAAAGAAGTATGTAT......................................................................... 22 1 2 6.50 13 8 4 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTAT............................................................................. 18 0 2 6.50 13 9 1 2 0 0 1
.................................................................................................................TGGAATGTAAAGAAGGATGTAT......................................................................... 22 1 2 6.00 12 9 3 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTGTGTAT......................................................................... 22 1 2 6.00 12 10 1 1 0 0 0
.................................................................................................................TGGAATGTAAAGACGTATGTAT......................................................................... 22 1 2 5.50 11 5 6 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGGA.......................................................................... 21 1 2 5.50 11 0 3 4 4 0 0
.................................................................................................................TGGACTGTAAAGAAGTATGTAT......................................................................... 22 1 2 5.50 11 7 4 0 0 0 0
.................................................................................................................CGGAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 5.00 10 4 6 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGGAT......................................................................... 22 1 2 5.00 10 8 1 0 1 0 0
.................................................................................................................TGGAATGTAAATAAGTATGTAT......................................................................... 22 1 2 4.50 9 4 5 0 0 0 0
.................................................................................................................TGGAATGCAAAGAAGTATGTAT......................................................................... 22 1 2 4.50 9 8 1 0 0 0 0
.................................................................................................................TGGAATTTAAAGAAGTATGTAT......................................................................... 22 1 2 4.50 9 5 4 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGG........................................................................... 20 1 2 4.50 9 3 5 0 1 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGCAT......................................................................... 22 1 2 4.50 9 7 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGGAG......................................................................... 22 2 4 4.25 17 2 6 5 4 0 0
.................................................................................................................TGGAATGTCAAGAAGTATGTAT......................................................................... 22 1 2 4.00 8 5 3 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAAA........................................................................ 23 2 5 3.60 18 6 11 1 0 0 0
.................................................................................................................TGAAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 3.50 7 3 4 0 0 0 0
.................................................................................................................TGCAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 3.50 7 6 1 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTATT........................................................................ 22 0 2 3.50 7 5 0 2 0 0 0
.................................................................................................................TGGAATGTAAAGAAG................................................................................ 15 0 12 3.42 41 38 3 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTACA........................................................................ 23 2 4 3.25 13 3 1 4 5 0 0
.................................................................................................................TGGAATATAAAGAAGTATGTAT......................................................................... 22 1 2 3.00 6 4 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGGAGTATGTAT......................................................................... 22 1 2 3.00 6 4 2 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTAC......................................................................... 21 1 2 3.00 6 5 1 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGT........................................................................... 19 0 2 3.00 6 2 0 4 0 0 0
.................................................................................................................TGGAACGTAAAGAAGTATGTAT......................................................................... 22 1 2 3.00 6 4 2 0 0 0 0
.................................................................................................................AGGAATGTAAAGAAGTATGTAT......................................................................... 22 1 3 2.67 8 6 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAG......................................................................... 22 1 2 2.50 5 3 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTAGGTAT......................................................................... 22 1 2 2.50 5 4 1 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTA.......................................................................... 20 0 2 2.50 5 2 2 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTT.......................................................................... 21 1 3 2.33 7 2 0 4 1 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATAA....................................................................... 24 2 3 2.33 7 4 3 0 0 0 0
.................................................................................................................TGGAATGTAAAGAATTATGTAT......................................................................... 22 1 2 2.00 4 2 2 0 0 0 0
.................................................................................................................TCGAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 2.00 4 1 3 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATTTAT......................................................................... 22 1 2 2.00 4 4 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTAAGTAT......................................................................... 22 1 2 2.00 4 2 1 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGAATGTAT......................................................................... 22 1 3 2.00 6 2 4 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTGT......................................................................... 22 1 2 2.00 4 2 2 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTATA........................................................................ 22 1 2 2.00 4 2 2 0 0 0 0
...................................................................................................................GAATGTAAAGAAGTATGT........................................................................... 18 0 2 2.00 4 4 0 0 0 0 0
.................................................................................................................TGGAATGTTAAGAAGTATGTAT......................................................................... 22 1 3 2.00 6 1 4 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGAAT......................................................................... 22 1 2 1.50 3 3 0 0 0 0 0
.................................................................................................................TGGAATGTAACGAAGTATGTAT......................................................................... 22 1 2 1.50 3 0 3 0 0 0 0
................................................................................................................TTGGAATGTAAAGAAGTATGTA.......................................................................... 22 1 2 1.50 3 2 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTCTGTAT......................................................................... 22 1 2 1.50 3 1 2 0 0 0 0
.................................................................................................................TGGGATGTAAAGAAGTATGTA.......................................................................... 21 1 2 1.50 3 3 0 0 0 0 0
.................................................................................................................TAGAATGTAAAGAAGTATGTAT......................................................................... 22 1 2 1.50 3 1 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATG........................................................................ 23 1 2 1.50 3 3 0 0 0 0 0
................................................................................................................CTGGAATGTAAAGAAGTATGTA.......................................................................... 22 1 2 1.50 3 3 0 0 0 0 0
.................................................................................................................TGGAATGTAAGGAAGTATGT........................................................................... 20 1 3 1.33 4 1 1 2 0 0 0
.................................................................................................................TGGAAAGTAAAGAAGTATGTAT......................................................................... 22 1 3 1.33 4 3 1 0 0 0 0
.................................................................................................................TGGAATGTGAAGAAGTATGTAT......................................................................... 22 1 3 1.33 4 3 1 0 0 0 0
..................................................................................................................TGAATGTAAAGAAGTATGT........................................................................... 19 1 8 1.25 10 8 2 0 0 0 0
.................................................................................................................TGGAATGTAGGGAAGTATGTAT......................................................................... 22 2 4 1.25 5 2 3 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATTT....................................................................... 24 0 2 1.00 2 0 1 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGA........................................................................... 20 1 2 1.00 2 1 1 0 0 0 0
..........................................................................ACATACTTCTTTATGTGCCCAT................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATATAT......................................................................... 22 1 2 1.00 2 1 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGT........................................................................... 20 1 2 1.00 2 1 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTCTGTAA......................................................................... 22 2 2 1.00 2 2 0 0 0 0 0
.................................................................................................................TGGAATGTAAACAAGTATGTAT......................................................................... 22 1 3 1.00 3 1 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTTT......................................................................... 22 1 3 1.00 3 3 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATTAC...................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATC........................................................................ 23 1 2 1.00 2 2 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTGTAT....................................................................... 24 2 2 1.00 2 0 2 0 0 0 0
.................................................................................................................TGTAATGTAAAGAAGTATGT........................................................................... 20 1 2 1.00 2 1 1 0 0 0 0
.................................................................................................................TGGTATGTAAAGAAGTATGTAT......................................................................... 22 1 3 1.00 3 1 2 0 0 0 0
...................................................................................................................TAATGTAAAGAAGTATGTAT......................................................................... 20 1 5 1.00 5 4 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATCTAT......................................................................... 22 1 2 1.00 2 1 1 0 0 0 0
..................................................................................................................CGAATGTAAAGAAGTATGTAT......................................................................... 21 1 2 1.00 2 0 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAGGTATGTAA......................................................................... 22 2 3 1.00 3 2 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTCTAAC...................................................................... 25 3 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAATGAAGTATGTAT......................................................................... 22 1 2 1.00 2 1 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATTGGAA.................................................................... 27 3 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGT............................................................................... 16 0 5 0.80 4 0 0 3 1 0 0
.................................................................................................................TGGAATTTAAAGAAGTATGT........................................................................... 20 1 3 0.67 2 0 2 0 0 0 0
.................................................................................................................TGGGATGTAAAGAAGTATGT........................................................................... 20 1 3 0.67 2 2 0 0 0 0 0
..............................................................................................................TTATGGAATGTAAAGAAGTATGGAG......................................................................... 25 3 3 0.67 2 0 0 2 0 0 0
.................................................................................................................TTGAATGTAAAGAAGTATGTAA......................................................................... 22 2 6 0.67 4 2 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGC........................................................................... 20 1 3 0.67 2 2 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAACTATGT........................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................................GGAATGTAAAGACGTATGTAT......................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAACTATGTAT......................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................................GAATGTAAAGAAGTATGTCT......................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................GAATGTAAAGAAGTATGTATT........................................................................ 21 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTACAGAAGTATGTA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGGAGTATGTA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................CCGAATGTAAAGAAGTATGTAT......................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAGT........................................................................ 23 1 2 0.50 1 0 0 0 1 0 0
................................................................................................................ATGGAATGTAAAGAAGTATGTAA......................................................................... 23 1 2 0.50 1 0 1 0 0 0 0
................................................................................................................CTGGAATGTAAGGAAGTATGTAT......................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
...............................................................................................................AATGGAATGTAAAGAAGTATGT........................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAGAGAAGTATGTATT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
...............................................................................................................TCTGGAATGTAAAGAAGTATGTAT......................................................................... 24 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGCAC......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................CTGAATGTAAAGAAGTATGTAT......................................................................... 22 2 4 0.50 2 0 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTGTGTATT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................CGATCTGGAATGTAAAGAAGTATGTAT......................................................................... 27 3 2 0.50 1 0 0 1 0 0 0
................................................................................................................ATGGAATGTAAAGAAGTATGT........................................................................... 21 0 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAAGGTAAAGAAGTATGTAT......................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGGAT......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTTTT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAACGAAGTATGTATT........................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGTA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATATAAAGAAGTATGT........................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAAC........................................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGCATGCAT......................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGGATG........................................................................ 23 2 2 0.50 1 0 0 0 1 0 0
...................................................................................................................GAATGTAAAGAAGTATGTA.......................................................................... 19 0 2 0.50 1 0 1 0 0 0 0
.................................................................................................................CGGAATGTAAAGAAGTATG............................................................................ 19 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAAGGTAAAGAAGTATGTATT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAGGAAGTATGTAC......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTCTT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................CGGGATGTAAAGAAGTATGTAT......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAGGTATGTATT........................................................................ 23 1 2 0.50 1 0 0 0 1 0 0
..................................................................................................................GGAATGTAAAGAAGTACGTAT......................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAACAAGTATGTATT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGAAAAGAAGTATGT........................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAGAGAAGTATGTAA......................................................................... 22 2 4 0.50 2 0 2 0 0 0 0
.................................................................................................................TGGAATGTACAGAAGTATGTATA........................................................................ 23 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGTCT......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGATTGTAAAGAAGTATGT........................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................................GGAATGTACAGAAGTATGTAT......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAAAGCAGTATGTAT......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................................CTGGAATGTAAAGAAGTTTGTAT......................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGATGTATGTAT......................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTACGTAA......................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGCATGTAAAGAAGTATGT........................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGCAATGTAAAGAAGGATGTAT......................................................................... 22 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGCA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTACAGAAGTATGT........................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................CGGAATGTAAAGAAGTATGTATT........................................................................ 23 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGTAATGTAAAGAAGTATGTA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................................CTGGAATGTAAAGAAGTATGT........................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TTGAATGTAAAGAAGTATGTATT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................AATGTAAAGAAGTATGTAT......................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAGGTATGTA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..............................................................................................................CGCTGGAATGTAAAGAAGTATG............................................................................ 22 2 2 0.50 1 0 0 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGAA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGTAGTATGTA.......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGGATGTAAAGAAGTATGTATT........................................................................ 23 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................................GAATGTAAAGAAGTATGTAC......................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATTTAAAGAAGTATGTATT........................................................................ 23 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGCAAAGAAGTATGTA.......................................................................... 21 1 4 0.50 2 0 2 0 0 0 0
................................................................................................................CTGGAGTGTAAAGAAGTATGTAT......................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTAAGTA.......................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTTTGTAT......................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTACAGAAGTCTGTAT......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGCATGTAAAGAAGTCTGTAT......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..............................................................................................................CGCTGGAATGTAAAGAAGTATGGAT......................................................................... 25 3 2 0.50 1 0 0 0 1 0 0
.................................................................................................................TGGAATGTAAAGAAGGATGT........................................................................... 20 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGGATGTAT......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................CGGAATGTAAAGAAGTAAGTAT......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGATTGTAAAGAAGTATGTAT......................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAATT....................................................................... 24 1 2 0.50 1 0 0 1 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTATAT....................................................................... 24 1 2 0.50 1 0 0 1 0 0 0
.................................................................................................................TGGAATGTAGGGAAGTATGTATT........................................................................ 23 2 2 0.50 1 0 0 0 1 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGTAAT........................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGACGTATGTAC......................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TGGATGTAAAGAAGTATGTAT......................................................................... 21 2 16 0.44 7 5 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGGAA......................................................................... 22 2 7 0.43 3 3 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGCATGTAC......................................................................... 22 2 5 0.40 2 2 0 0 0 0 0
.................................................................................................................TGGAATGTAAGGAAGTATGTAA......................................................................... 22 2 5 0.40 2 2 0 0 0 0 0
.................................................................................................................TGGGATGTAAAGTAGTATGTAT......................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGAAA......................................................................... 22 2 6 0.33 2 0 1 0 0 1 0
..............................................................................................................TTATGGAATGTAAAGAAGTAT............................................................................. 21 1 3 0.33 1 0 0 1 0 0 0
.................................................................................................................TGGAATGTAGAGAAGTATGTA.......................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
................................................................................................................TGGGAATGTAAAGAAGTATGTAT......................................................................... 23 2 6 0.33 2 0 2 0 0 0 0
.................................................................................................................TGGAATGTAAAGAGGTATGTAC......................................................................... 22 2 3 0.33 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGACGTATGTCT......................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
..............................................................................................................TTATGGAATGTAAAGAAGTATGGA.......................................................................... 24 2 3 0.33 1 0 0 0 1 0 0
..................................................................................................................CGAATGTAAAGAAGTATGTAC......................................................................... 21 2 3 0.33 1 0 1 0 0 0 0
..............................................................................................................CTCTGGAATGTAAAGAAGTATGGAG......................................................................... 25 3 3 0.33 1 0 0 0 1 0 0
.................................................................................................................AGGAATGTAAAGAAGTATGTATT........................................................................ 23 1 3 0.33 1 0 1 0 0 0 0
..................................................................................................................GGAATTTAAAGAAGTATGTAT......................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
..................................................................................................................GGAATGTAGAGAAGTATGTAT......................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGACGTATGTAA......................................................................... 22 2 3 0.33 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGCTTGTAT......................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTT.......................................................................... 20 1 3 0.33 1 0 0 1 0 0 0
.................................................................................................................TGGAATGTATAGAAGTATGTAT......................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGCATGTAT......................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTTAAGAAGTATGTA.......................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGGAGT........................................................................ 23 2 3 0.33 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGACGTATGT........................................................................... 20 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGCTGTATGTAT......................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGTAA......................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGGATGTAC......................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TGAATGTAAAGAAGTATGTA.......................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
................................................................................................................CTGGAATGTAAAGAAGTATGTATA........................................................................ 24 2 3 0.33 1 0 0 0 0 1 0
.................................................................................................................TGGAATGTAAAGAAGCATGT........................................................................... 20 1 7 0.29 2 1 1 0 0 0 0
.................................................................................................................TGGAATGTCCAGAAGTATGTAT......................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGCATGTAAAGAAGCATGTAT......................................................................... 22 2 4 0.25 1 0 1 0 0 0 0
.................................................................................................................TGGCATGTAAAGAAGTATG............................................................................ 19 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTGAAGAAGTAGGTAT......................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAGAGAGGTATGTAT......................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGATGTATGT........................................................................... 20 1 4 0.25 1 0 1 0 0 0 0
..............................................................................................................CGCTGGAATGTAAAGAAGTAT............................................................................. 21 2 4 0.25 1 0 0 1 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGTAC......................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGTATGTAAAGAAGTATGT........................................................................... 20 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGACTGTAAAGAAGTATGT........................................................................... 20 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTGTAT........................................................................... 20 2 20 0.25 5 5 0 0 0 0 0
.................................................................................................................ACGAATGTAAAGAAGTATGTAT......................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGACTGTAAAGAAGTATGTAC......................................................................... 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATAT........................................................................... 20 1 4 0.25 1 1 0 0 0 0 0
.................................................................................................................TGGAATCTAAAGAAGTATGTAT......................................................................... 22 1 4 0.25 1 1 0 0 0 0 0
..............................................................................................................CGCTGGAATGTAAAGAAGTATGG........................................................................... 23 3 8 0.25 2 0 0 0 2 0 0
.................................................................................................................TGGAATGTAAAGTAGTATGTAA......................................................................... 22 2 8 0.25 2 0 1 1 0 0 0
..................................................................................................................GGAATGTAAAGAAGTA.............................................................................. 16 0 5 0.20 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTGTGT........................................................................... 20 1 5 0.20 1 1 0 0 0 0 0
...................................................................................................................GAATGTAAAGAAGTATGTAA......................................................................... 20 1 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGGATGTAAAGAAGTATGTAA......................................................................... 22 2 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGGATGTAAGGAAGTATGTA.......................................................................... 21 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAATAAGTATGTAA......................................................................... 22 2 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGGAGTATGTAA......................................................................... 22 2 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGCAGTATGTAA......................................................................... 22 2 5 0.20 1 0 1 0 0 0 0
..................................................................................................................GGAATGTAAAGGAGTATGGAT......................................................................... 21 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................................CGGAATGAAAAGAAGTATGTAT......................................................................... 22 2 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGAGTGTAAAGAAGGATGTAT......................................................................... 22 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................................TGGGATGTAGAGAAGTATGTAT......................................................................... 22 2 5 0.20 1 1 0 0 0 0 0
................................................................................................................CTGGAATGTAAAGAAGTATATAT......................................................................... 23 2 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTAAGTAC......................................................................... 22 2 5 0.20 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGCATTTAT......................................................................... 22 2 5 0.20 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTGAAGAAGTATGTAC......................................................................... 22 2 6 0.17 1 1 0 0 0 0 0
.................................................................................................................TGGCATTTAAAGAAGTATGTAT......................................................................... 22 2 6 0.17 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAACTATGTAA......................................................................... 22 2 7 0.14 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTCTGTAA......................................................................... 21 2 7 0.14 1 0 1 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATGGAG......................................................................... 21 2 7 0.14 1 0 0 1 0 0 0
.................................................................................................................TTGAATGTACAGAAGTATGTAT......................................................................... 22 2 7 0.14 1 0 1 0 0 0 0
.................................................................................................................TGCAATGTAAAGAAGTATGTAC......................................................................... 22 2 7 0.14 1 0 0 1 0 0 0
...................................................................................................................GAATGTAAAGAAGTA.............................................................................. 15 0 15 0.13 2 2 0 0 0 0 0
.................................................................................................................TTGAATGTAAAGAAGAATGTAT......................................................................... 22 2 8 0.13 1 0 1 0 0 0 0
.................................................................................................................TGGAATGTAAAGATGTATGTAC......................................................................... 22 2 8 0.13 1 1 0 0 0 0 0
.................................................................................................................TGGAATATAAAGAAGTATGTAC......................................................................... 22 2 8 0.13 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGCAA......................................................................... 22 2 9 0.11 1 0 1 0 0 0 0
.................................................................................................................TGGAATTTAAAGAAGTATGTAA......................................................................... 22 2 9 0.11 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGCATGCA.......................................................................... 21 2 9 0.11 1 1 0 0 0 0 0
.................................................................................................................TGGAATGCAAAGAAGTATGTT.......................................................................... 21 2 10 0.10 1 0 0 0 1 0 0
..................................................................................................................TAAATGTAAAGAAGTATGTAT......................................................................... 21 2 20 0.10 2 2 0 0 0 0 0
.................................................................................................................TGGAATTTAAAGAGGTATGTAT......................................................................... 22 2 10 0.10 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATCG........................................................................... 20 2 10 0.10 1 1 0 0 0 0 0
..................................................................................................................GGAATGTAAAGAAGTATAT........................................................................... 19 1 11 0.09 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGACGGATGTAC......................................................................... 22 3 11 0.09 1 1 0 0 0 0 0
...................................................................................................................GAATGTAAAGAAGTATGTATAA....................................................................... 22 2 13 0.08 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTATGAT.......................................................................... 21 2 13 0.08 1 0 1 0 0 0 0
...................................................................................................................GAATGTAAAGACGTATGTCT......................................................................... 20 2 13 0.08 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAGGTAT............................................................................. 18 1 14 0.07 1 1 0 0 0 0 0
.................................................................................................................TGGAATGTAAAGAAGTAA............................................................................. 18 1 15 0.07 1 1 0 0 0 0 0
.................................................................................................................TGTAATGTAAAGAAGTGTGT........................................................................... 20 2 18 0.06 1 0 1 0 0 0 0
...................................................................................................................TAATGTAAAGAAGTATG............................................................................ 17 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................TGGAATATAAAGAAGAATGTAT......................................................................... 22 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GGCCCGGAGACACGTCCGAAGAACCCCGGGGAGGGGCTCGGTGCTGACCCGGCCAACTGCATGGACGAACCCCCTGTATGAAGAAATACACGGGTATACCTGGACGATTCGATACCTTACATTTCTTCATACATAAAGTCCGACCCTTGAGAGTGGCCTTCTTCCCCGTCgCCCgggCgCCCCggCgggCCCCCTGTCTGTCTGTCCG

**********************************************************((.(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).))).)).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:30 AM