ID:

ssc-let-7a-2

 Coordinate:

chr3:44864433-44864524 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.5 -40.2 -40.1
mature

  1. ssc-let-7a-2  chr3:44864443-44864464 +
  2. ssc-let-7a-1  chr9:54378110-54378131 -
star

Sense Strand Reads

GTGGTGCTCAGCTGTGGTCCCTTTTCAGCATTCACTGTGGACGTTCTCTTCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAACGTGATAGAAAAATCTGCATCCAGACAGCATCATCCAAGCATCACTCAACATCAGT

*********************************************.(((((((..(((((.(((((((((((((((((((((.....(((...((((....)))).)))))))))))))))))))))))))))))..)))).)))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139075

testes		 SRR066810

testes		 SRR066809

ovary		 SRR139076

testes		 SRR1274763

ovary		 SRR1274764

testes
............................................................TGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 0 2 503285.00 1006570 511120 184619 179934 46055 53815 31027
............................................................TGAGGTAGTAGGTTGTATAGT............................................................................................................... 21 0 2 105188.00 210376 109028 35340 36546 11138 12287 6037
............................................................TGAGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 1 2 28705.00 57410 36944 6915 6509 4936 1276 830
............................................................TGAGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 0 2 27212.00 54424 29792 9948 8489 3856 1665 674
............................................................TGAGGTAGTAGGTTGTATAG................................................................................................................ 20 0 2 13015.50 26031 18946 1450 1319 2503 1044 769
............................................................TGAGGTAGTAGGTTGTGTGGTTAT............................................................................................................ 24 3 2 6014.00 12028 8091 1530 1493 744 124 46
............................................................TGAGGTAGTAGGTTGTGTGGTTTT............................................................................................................ 24 2 2 5318.50 10637 5545 2293 1949 630 117 103
............................................................TGAGGTAGGAGGTTGTATAGTTT............................................................................................................. 23 1 3 3442.00 10326 9076 122 313 543 189 83
............................................................TGAGGTAGTAGGTTGTATAGTA.............................................................................................................. 22 1 2 2566.00 5132 3181 493 642 286 325 205
............................................................TGAGGTAGTAGGTTGTATA................................................................................................................. 19 0 2 1503.50 3007 2111 172 196 197 163 168
.............................................................GAGGTAGTAGGTTGTATAGTT.............................................................................................................. 21 0 2 1432.50 2865 1417 579 717 107 25 20
............................................................TGCGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 1301.50 2603 2413 11 12 133 23 11
............................................................TGAGGTAGTAGGTTGTATGGTTAT............................................................................................................ 24 2 2 1180.50 2361 1361 431 406 119 34 10
............................................................TGAGGTAGTAGGTTGTATAGTAA............................................................................................................. 23 2 2 1123.00 2246 1381 245 260 254 63 43
............................................................TGAGGTAGTAGGTTGTAT.................................................................................................................. 18 0 3 1115.00 3345 2540 130 196 130 206 143
............................................................TGAGGTAGTAGGTTGTATAGTTG............................................................................................................. 23 1 4 1034.50 4138 3464 98 125 317 101 33
............................................................TGAGGTAGTAGGTTGTA................................................................................................................... 17 0 3 971.00 2913 1653 158 202 47 646 207
............................................................TGAGGTAGTAGGTTGTGTAGTT.............................................................................................................. 22 1 2 966.00 1932 1680 112 93 30 15 2
............................................................TGAGGTAGTAGGTTGCATAGTT.............................................................................................................. 22 1 3 897.67 2693 1600 529 492 52 12 8
............................................................TGAGGTAGTAGGTTGTATAA................................................................................................................ 20 1 2 858.00 1716 1259 106 183 97 46 25
............................................................TGAGGTAGTAGGTTGTATAGA............................................................................................................... 21 1 3 835.00 2505 1178 429 463 158 171 106
...........................................................CTGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 23 1 3 804.33 2413 988 540 606 246 25 8
............................................................TGAGGTAGTAGGTTGTATAGTTAT............................................................................................................ 24 1 1 787.00 787 403 117 113 112 26 16
............................................................TGAGGTAGTAGGTTGTATGGTTTT............................................................................................................ 24 1 2 717.00 1434 599 379 358 54 35 9
............................................................TGAGGCAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 704.00 1408 838 96 117 135 124 98
............................................................TGAGGTAGTAGGTTGTATAGTTTT............................................................................................................ 24 0 1 697.00 697 340 109 122 81 25 20
............................................................TGAGGTAGTCGGTTGTATAGTT.............................................................................................................. 22 1 2 518.00 1036 888 12 20 112 2 2
............................................................TGAGGTAGTAGGTTGTACAGTT.............................................................................................................. 22 1 3 472.33 1417 999 202 172 20 17 7
............................................................TGAGGTGGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 391.50 783 531 100 99 39 7 7
............................................................AGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 3 387.33 1162 732 186 183 56 0 5
............................................................TGAGGTAGTAGGCTGTATAGTT.............................................................................................................. 22 1 2 364.00 728 432 106 100 45 28 17
............................................................TGAGGTATTAGGTTGTATAGTT.............................................................................................................. 22 1 2 363.00 726 624 14 17 68 1 2
............................................................TGAGGTAGTAGGTTGTATAGTTC............................................................................................................. 23 1 2 356.00 712 198 252 219 26 11 6
............................................................TGAGGTAGTAGGTTGTATCGTT.............................................................................................................. 22 1 3 351.00 1053 903 24 29 78 11 8
.............................................................GAGGTAGTAGGTTGTATAGT............................................................................................................... 20 0 2 327.00 654 381 97 133 36 4 3
............................................................TGAGGTAGTAGGTTGTGTGGTTTTT........................................................................................................... 25 3 3 322.67 968 307 302 294 45 13 7
............................................................TGAGGTAGTAGTTTGTATAGTT.............................................................................................................. 22 1 5 322.00 1610 935 336 254 75 6 4
............................................................TGGGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 321.00 642 401 82 103 44 7 5
............................................................CGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 303.50 607 336 97 108 54 5 7
............................................................TGAGGTAGTAGGTTGTGT.................................................................................................................. 18 1 9 291.78 2626 2304 72 92 92 40 26
............................................................TGAGGTAGTAGGTTGTATAGCT.............................................................................................................. 22 1 2 274.00 548 361 58 62 53 7 7
............................................................TGCGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 265.00 530 489 3 0 36 1 1
............................................................TGAGGTAGTGGGTTGTATAGTT.............................................................................................................. 22 1 2 262.50 525 287 104 93 30 4 7
............................................................TAAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 252.50 505 287 71 113 29 2 3
............................................................TGAGGTAGTAGGTTGTATGGTTGTAG.......................................................................................................... 26 2 1 242.00 242 1 143 98 0 0 0
............................................................TGAGGTCGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 229.50 459 374 11 13 52 7 2
...........................................................GTGAGGTAGTAGGTTGTATAGT............................................................................................................... 22 1 3 228.67 686 243 72 221 30 84 36
............................................................TGAGGTAGTAGGTTGTCTAGTT.............................................................................................................. 22 1 2 225.00 450 382 6 20 31 7 4
............................................................TGAGGTAGTAGGTTGTATAGTC.............................................................................................................. 22 1 2 210.00 420 241 70 63 31 5 10
............................................................TGAGGTAGTAGGTCGTATAGTT.............................................................................................................. 22 1 2 206.50 413 241 61 75 22 10 4
............................................................TGAGGTAGCAGGTTGTATAGTT.............................................................................................................. 22 1 3 204.00 612 418 65 61 35 23 10
............................................................TGAGGGAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 203.50 407 293 16 7 77 10 4
............................................................TGAGGTAGTAGGTTGTATAGTAT............................................................................................................. 23 1 2 195.50 391 304 13 25 27 17 5
............................................................TGAGGTAGGAGGTTGTATAGTTTT............................................................................................................ 24 1 1 192.00 192 157 5 10 15 3 2
............................................................TGAGGTAGTAGGTTGTGTGGTTTTA........................................................................................................... 25 2 1 189.00 189 99 31 45 13 1 0
...........................................................CTGAGGTAGTAGGTTGTATAGT............................................................................................................... 22 1 3 186.00 558 242 103 144 64 2 3
............................................................TGAGGTAGTAGGTTTTATAGTT.............................................................................................................. 22 1 2 182.50 365 280 19 41 21 4 0
............................................................TGAGGTAGTAGGTTGT.................................................................................................................... 16 0 3 179.00 537 456 9 14 15 35 8
............................................................TGAGGTAGTAGGTTGTATAGGT.............................................................................................................. 22 1 2 167.50 335 281 12 24 17 0 1
............................................................TGAGGTAGTATGTTGTATAGTT.............................................................................................................. 22 1 2 160.50 321 252 20 27 18 3 1
............................................................TGAGGTAGTAGGTTGTGTAGT............................................................................................................... 21 1 2 158.00 316 252 17 26 14 4 3
............................................................TGAGGAAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 154.00 308 175 29 29 53 15 7
............................................................TGAGGTACTAGGTTGTATAGTT.............................................................................................................. 22 1 2 151.50 303 205 26 25 32 11 4
............................................................TGAGGCAGTAGGTTGTATAGT............................................................................................................... 21 1 2 145.00 290 161 17 28 31 32 21
............................................................TGAGGTAGTAGCTTGTATAGTT.............................................................................................................. 22 1 4 141.50 566 403 59 50 39 10 5
............................................................TGAGGTAGTAGGTTGTG................................................................................................................... 17 1 18 139.06 2503 2064 6 11 52 263 107
............................................................TGATGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 134.50 269 191 20 31 22 4 1
...............................................................................................................CTATACAATCTACTGTCTTTCT........................................................... 22 1 1 132.00 132 12 32 72 4 4 8
............................................................TGAGGTAGTAGGTTGCATAGT............................................................................................................... 21 1 3 129.00 387 189 101 83 9 5 0
............................................................TGAGGTAGTAGGGTGTATAGTT.............................................................................................................. 22 1 2 128.50 257 186 24 11 32 1 3
..............................................................AGGTAGTAGGTTGTATAGTT.............................................................................................................. 20 0 2 124.50 249 211 4 14 17 3 0
............................................................TGAGGTAGTAGGTTGTATATTT.............................................................................................................. 22 1 3 124.00 372 291 14 22 43 2 0
............................................................TGAGGTAGTCGGTTGTATAGT............................................................................................................... 21 1 2 123.00 246 206 2 3 33 1 1
............................................................TGAGGTAGTAGGTTGTATTGTT.............................................................................................................. 22 1 4 123.00 492 335 66 68 18 3 2
............................................................TGAGGTAGGAGGTTGTATAGTAT............................................................................................................. 23 2 3 114.00 342 320 1 2 13 5 1
............................................................TGAGGTAGTAGGATGTATAGTT.............................................................................................................. 22 1 2 113.50 227 142 35 28 22 0 0
...........................................................GTGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 23 1 3 112.00 336 89 51 95 10 58 33
.............................................................GAGGTAGTAGGTTGTATAGTTT............................................................................................................. 22 0 2 105.50 211 130 31 33 17 0 0
............................................................TGAGGTAGGAGGTTGTATAGTTAT............................................................................................................ 24 2 2 101.00 202 184 5 3 7 1 2
............................................................TGAGGTAGTAGGTTATATAGTT.............................................................................................................. 22 1 2 99.50 199 109 36 43 6 4 1
............................................................TGAGGTAGTAGGTTGGATAGTT.............................................................................................................. 22 1 2 98.00 196 148 17 19 11 0 1
............................................................TGAGGTAGTAGGTTGTATAGAA.............................................................................................................. 22 2 4 97.75 391 138 59 112 20 54 8
............................................................TGAGGTAGTAGGTTGTTTAGTT.............................................................................................................. 22 1 2 97.00 194 115 34 30 10 2 3
............................................................TGAGGTAGTAGGTTGTATAT................................................................................................................ 20 1 3 94.00 282 226 6 5 34 6 5
............................................................TGAGGTAGTAGGTTCTATAGTT.............................................................................................................. 22 1 2 91.00 182 135 11 17 12 3 4
............................................................TGAGGTAGTAGGTTGTATAGTG.............................................................................................................. 22 1 2 90.50 181 146 9 7 10 5 4
............................................................TGAGGTAATAGGTTGTATAGTT.............................................................................................................. 22 1 2 90.00 180 93 33 37 12 5 0
............................................................TGCGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 90.00 180 160 0 0 20 0 0
...........................................................ATGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 23 0 1 90.00 90 10 28 45 7 0 0
............................................................TGAGTTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 88.50 177 147 7 11 10 2 0
............................................................TGAGGTAGTAGGTTGTGTGGTTATA........................................................................................................... 25 3 1 88.00 88 49 11 19 2 3 4
............................................................TGTGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 87.50 175 101 32 24 13 3 2
............................................................TGAGGTAGTAGGTTGTGTGGTATT............................................................................................................ 24 3 3 85.67 257 158 36 34 20 7 2
.............................................................GAGGTAGTAGGTTGTATAGTTA............................................................................................................. 22 1 2 85.00 170 106 25 25 13 0 1
............................................................TGAGGTAGTAGGTTGTACAGT............................................................................................................... 21 1 3 83.67 251 204 18 22 4 2 1
............................................................TGCGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 81.00 162 141 1 0 19 0 1
...............................................................................................................CTATACAACCTACTGTCTTTCC........................................................... 22 1 1 79.00 79 7 13 46 2 7 4
............................................................TGAGGTAGTAGGTTGTAAAGTT.............................................................................................................. 22 1 2 78.00 156 71 37 37 7 3 1
............................................................TGAGGTAGTAAGTTGTATAGTT.............................................................................................................. 22 1 3 77.67 233 143 44 34 6 3 3
............................................................TGAGGTAGTAGGCTGTATAGT............................................................................................................... 21 1 2 77.50 155 105 17 17 14 1 1
............................................................TGAGGTAGTAGGTTGTATAAA............................................................................................................... 21 2 3 77.33 232 113 23 57 10 16 13
............................................................TTAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 77.00 154 93 24 26 8 1 2
............................................................TGAGGTAGTAGGTTGTAAA................................................................................................................. 19 1 2 76.00 152 54 6 29 3 45 15
............................................................TGAGGTGGTAGGTTGTATAGT............................................................................................................... 21 1 2 75.00 150 104 15 18 8 5 0
............................................................TGGGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 75.00 150 96 18 25 9 1 1
...............................................................GGTAGTAGGTTGTATAGTT.............................................................................................................. 19 0 2 74.00 148 85 7 12 1 40 3
............................................................TGAGGTAGTAGGTTGTATAGTTAAA........................................................................................................... 25 2 2 73.00 146 24 48 37 29 2 6
............................................................TGAGATAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 72.50 145 77 25 31 9 1 2
............................................................TGAGGTAGTAGGTTGAATAGTT.............................................................................................................. 22 1 2 72.50 145 94 22 24 4 1 0
............................................................CGAGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 72.00 144 82 17 25 17 3 0
...........................................................CTGAGGTAGTAGGTTGTATAGTTT............................................................................................................. 24 1 2 71.00 142 61 19 36 25 1 0
............................................................TGAGGTAGTAGGTTGTATAGTTGT............................................................................................................ 24 1 2 67.00 134 86 16 20 10 2 0
............................................................TGAGGTAGAAGGTTGTATAGTT.............................................................................................................. 22 1 3 67.00 201 114 26 39 16 4 2
............................................................GGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 67.00 134 102 14 13 4 1 0
............................................................TGAGGTAGTTGGTTGTATAGTT.............................................................................................................. 22 1 3 66.67 200 113 34 28 18 4 3
............................................................TGAGGTAGTAGGTAGTATAGTT.............................................................................................................. 22 1 2 66.50 133 75 22 29 7 0 0
............................................................TGAGGTAGTAGGTTGTATAGC............................................................................................................... 21 1 2 64.50 129 87 19 8 12 2 1
............................................................TGAGGTTGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 64.50 129 74 22 26 6 1 0
............................................................TGAAGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 3 63.00 189 123 19 33 12 1 1
............................................................TGAGGTAGTAGGTTGTGTAGTTT............................................................................................................. 23 1 2 62.50 125 100 9 10 6 0 0
............................................................TGAGGTAGTAGTTTGTATAGT............................................................................................................... 21 1 5 62.00 310 176 63 53 14 3 1
............................................................AGAGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 3 60.67 182 104 34 33 11 0 0
............................................................TGAGGTAGTAGGTTGTGTAGTTA............................................................................................................. 23 2 2 58.50 117 104 2 8 3 0 0
............................................................TGAGGTATTAGGTTGTATAGT............................................................................................................... 21 1 2 57.50 115 95 3 5 10 1 1
...........................................................CTGAGGTAGTAGGTTGTATAGTTA............................................................................................................. 24 2 3 56.67 170 89 22 28 30 0 1
............................................................TGAGGTAGTAGGTCGTATAGT............................................................................................................... 21 1 2 54.50 109 59 20 15 5 6 4
............................................................TGAGGTAGTAGGTTGCATAGTTT............................................................................................................. 23 1 3 54.00 162 106 30 19 6 1 0
............................................................TGAGGTAGTAGGTTGTATT................................................................................................................. 19 1 5 52.40 262 163 17 23 19 23 17
............................................................TGAGGTAGTACGTTGTATAGTT.............................................................................................................. 22 1 2 52.00 104 61 13 13 12 2 3
............................................................TAAGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 52.00 104 62 10 23 8 1 0
............................................................TGAGGTAGTAGGTTGTGTGGTTGT............................................................................................................ 24 3 7 50.29 352 171 53 57 8 56 7
............................................................TGAGGTAGTAGGTTGTCTAGT............................................................................................................... 21 1 2 49.50 99 88 2 5 3 0 1
............................................................TGAGGTAGTAGGTTGTATAGTTAG............................................................................................................ 24 2 2 48.50 97 65 9 3 17 3 0
...............................................................GGTAGTAGGTTGTATAGTTTGA........................................................................................................... 22 1 1 47.00 47 45 0 0 2 0 0
............................................................TGAGGGAGTAGGTTGTATAGT............................................................................................................... 21 1 2 45.00 90 62 0 4 21 3 0
............................................................TGAGGTAGTAGGTTGTATAGAT.............................................................................................................. 22 1 3 44.33 133 98 14 9 9 1 2
...............................................................................................................CTATACAACCTACTGTCTTTC............................................................ 21 1 1 44.00 44 3 11 21 2 3 4
.................................................................TAGTAGGTTGTATAGTT.............................................................................................................. 17 0 2 44.00 88 0 7 14 0 66 1
............................................................TGAGGCAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 44.00 88 55 0 7 19 4 3
............................................................TGAGGTAGTAGGTTTTATAGT............................................................................................................... 21 1 2 43.00 86 61 2 11 11 1 0
............................................................TGAGGTAGTAGGTTGCATAGTTA............................................................................................................. 23 2 3 42.67 128 72 34 20 2 0 0
............................................................TGAGGCAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 41.50 83 53 6 7 6 8 3
...........................................................ATGAGGTAGTAGGTTGTATAGT............................................................................................................... 22 0 1 41.00 41 8 17 13 0 2 1
............................................................TGAGGTAGCAGGTTGTATAGT............................................................................................................... 21 1 3 40.67 122 79 15 19 6 2 1
............................................................TGAGGTAGTGGGTTGTATAGT............................................................................................................... 21 1 3 40.00 120 80 13 18 7 2 0
............................................................TGAGGTAGTAGGTTGTATAATT.............................................................................................................. 22 1 2 39.00 78 36 20 17 4 1 0
............................................................TGAGGTAGTAGCTTGTATAGT............................................................................................................... 21 1 4 37.25 149 103 11 13 19 2 1
............................................................TGAGGTCGTAGGTTGTATAGT............................................................................................................... 21 1 2 37.00 74 62 0 3 9 0 0
............................................................TGACGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 36.00 72 34 15 12 5 2 4
............................................................TGAGGTAGTAGGGTGTATAGT............................................................................................................... 21 1 2 35.50 71 48 10 4 7 1 1
............................................................TGAGGTAGTAGGTTGTATAGTTGTAG.......................................................................................................... 26 1 1 35.00 35 5 12 17 1 0 0
............................................................TGAGGTAGTCGGTTGTATAGTTT............................................................................................................. 23 1 2 34.50 69 64 0 1 4 0 0
............................................................TGAGCTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 34.50 69 37 11 12 3 4 2
............................................................TGAGGTAGTATGTTGTATAGT............................................................................................................... 21 1 2 34.50 69 59 4 2 4 0 0
............................................................TGAGGTAGTAGGTTGTATCGT............................................................................................................... 21 1 3 34.33 103 86 4 6 7 0 0
............................................................TGAGGTAGTAGGTTGTATAGTTTTT........................................................................................................... 25 1 1 34.00 34 14 8 11 1 0 0
............................................................TGAGGAAGTAGGTTGTATAGT............................................................................................................... 21 1 2 33.50 67 39 5 7 11 3 2
............................................................TGAGGTAGTAGGTTGTAA.................................................................................................................. 18 1 6 33.17 199 124 8 20 4 35 8
............................................................TGAGGTAGTAGGTTGTATACTT.............................................................................................................. 22 1 2 32.50 65 48 3 3 7 2 2
............................................................TGAGGTAGTCGGTTGTATAGTTA............................................................................................................. 23 2 2 32.50 65 48 0 1 15 0 1
............................................................TGAGGTAGTAGGTTG..................................................................................................................... 15 0 6 31.83 191 147 7 16 3 12 6
............................................................TGAGGTAGTAGGTGGTATAGTT.............................................................................................................. 22 1 2 31.50 63 40 7 11 3 0 2
............................................................TGAGGTAGTAGGTTGTATAGG............................................................................................................... 21 1 2 31.00 62 43 4 6 4 0 5
............................................................TGAGGTATTAGGTTGTATAGTTT............................................................................................................. 23 1 2 31.00 62 51 1 0 10 0 0
............................................................TGAGGTAGTAGGTTGTATAGTGA............................................................................................................. 23 2 2 31.00 62 53 1 2 6 0 0
.............................................................GAGGTAGTAGGTTGTATAG................................................................................................................ 19 0 2 30.50 61 44 8 3 5 0 1
............................................................TGAGGTAGTAGGTTGTATGGTTTTT........................................................................................................... 25 2 2 30.00 60 16 22 19 1 1 1
............................................................TGCGGTAGTAGGTTGTATAG................................................................................................................ 20 1 3 29.33 88 81 0 0 6 0 1
............................................................TGAGGCAGTAGGTTGTATAG................................................................................................................ 20 1 2 29.00 58 42 3 1 9 0 3
............................................................TGAGGTAGTAGGTTGTGTGGTTCT............................................................................................................ 24 3 4 28.75 115 40 37 28 1 6 3
............................................................TGAGGTAGTAGGTTGTATAGTTTC............................................................................................................ 24 1 2 28.50 57 32 10 11 3 0 1
..................................................................................TTAGGGTCACACCCACCACTGGGAG..................................................................................... 25 0 1 28.00 28 0 10 18 0 0 0
............................................................TGAGGTGGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 28.00 56 39 6 6 5 0 0
............................................................TCAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 1 2 28.00 56 38 6 6 2 2 2
...........................................................GTGAGGTAGTAGGTTGTATAG................................................................................................................ 21 1 3 27.00 81 52 5 6 6 7 5
...........................................................CTGAGGTAGTAGGTTGTATAG................................................................................................................ 21 1 3 26.67 80 55 3 4 18 0 0
............................................................TGAGGTAGTAGTTTGTATAGTTA............................................................................................................. 23 2 5 26.60 133 88 23 7 15 0 0
............................................................TGAGGTAGTAGGTTGTATTGT............................................................................................................... 21 1 4 26.50 106 77 12 10 5 1 1
............................................................TGAGGTAGTAGGTTGTATATT............................................................................................................... 21 1 3 26.33 79 61 1 10 7 0 0
............................................................TGAGGTAGTAGTTTGTATAGTTT............................................................................................................. 23 1 4 25.50 102 79 9 5 9 0 0
............................................................TGAGGTAGTAGGATGTATAGT............................................................................................................... 21 1 2 25.00 50 26 7 8 6 2 1
...............................................................................................................CTATACAATCTACTGTCTTTC............................................................ 21 0 1 25.00 25 1 10 13 0 0 1
............................................................TGAGGTAGTAGGTTGTATAAT............................................................................................................... 21 1 2 25.00 50 29 5 9 2 2 3
...............................................................TGTAGTAGGTTGTATAGTT.............................................................................................................. 19 1 2 25.00 50 41 3 4 2 0 0
............................................................TGAGGTATTAGGTTGTATAGTTA............................................................................................................. 23 2 2 24.50 49 44 0 0 5 0 0
............................................................TGAGGTAGTAGGTTGTGTAG................................................................................................................ 20 1 3 24.33 73 47 12 10 4 0 0
............................................................TGAGGTAGTAGGTTGTATAGTGT............................................................................................................. 23 1 2 24.00 48 35 1 3 8 1 0
............................................................CGAGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 23.00 46 26 7 6 7 0 0
...............................................................................................................CTATACAACCTACTGTCTTT............................................................. 20 1 1 23.00 23 3 3 13 1 2 1
............................................................AGAGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 1 3 22.67 68 54 5 4 5 0 0
............................................................TGAGGTAGTAGGTTGTGTGGTTGTAG.......................................................................................................... 26 3 1 22.00 22 2 12 8 0 0 0
............................................................TGAGGTAGTAGGTTGCATAG................................................................................................................ 20 1 3 21.67 65 58 1 4 1 0 1
............................................................TGAGGTAGTAGGTTGTATCGTTT............................................................................................................. 23 1 3 21.67 65 56 1 1 6 0 1
............................................................TGAGGTAGTAGCTTGTATAGTTA............................................................................................................. 23 2 4 21.50 86 65 6 2 13 0 0
............................................................TGTGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 21.50 43 20 7 13 3 0 0
............................................................TGAGGTAGTAGGTTGTGTA................................................................................................................. 19 1 4 21.25 85 64 6 5 1 8 1
............................................................TGAGGTAGCAGGTTGTATAGTTT............................................................................................................. 23 1 2 21.00 42 24 6 6 5 1 0
............................................................TGAGGTAGTAGGTTGTATAGTTCGAC.......................................................................................................... 26 3 1 21.00 21 16 0 0 5 0 0
............................................................TGAGGTAGTAGGCTGTATAGTTT............................................................................................................. 23 1 2 21.00 42 24 6 5 7 0 0
............................................................TGAGGTAGTAGGTTGTATAGTTAC............................................................................................................ 24 2 2 21.00 42 20 10 9 2 1 0
............................................................TGAGGTCGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 21.00 42 37 0 1 4 0 0
...........................................TTCTCTTCACTGTGGGA.................................................................................................................................... 17 0 3 21.00 63 0 27 34 0 2 0
............................................................TGAGGTAGTAGGTTGGATAGT............................................................................................................... 21 1 2 20.50 41 35 2 3 1 0 0
............................................................TGAGGTAGTAGGTTGTCTAGTTA............................................................................................................. 23 2 2 20.50 41 37 1 0 3 0 0
............................................................TGAGGTAGTAGGTTGTAAAGT............................................................................................................... 21 1 2 20.50 41 22 7 9 1 1 1
..............................................................AGGTAGTAGGTTGTATAGT............................................................................................................... 19 0 2 20.50 41 32 2 2 4 1 0
............................................................TGAGGTAGTAGGTTGTATAGTTCT............................................................................................................ 24 1 1 20.00 20 7 5 8 0 0 0
............................................................TGAGGTAGTAGGTTGTATAGTTAGA........................................................................................................... 25 2 1 20.00 20 7 3 8 2 0 0
............................................................GGAGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 20.00 40 32 4 2 2 0 0
............................................................TGAGGTAGTAGGTTGTATAGTAG............................................................................................................. 23 2 4 19.75 79 64 0 1 10 3 1
............................................................TGAGGTAGTAGCTTGTATAGTTT............................................................................................................. 23 1 3 19.67 59 50 1 2 6 0 0
............................................................AGAGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 2 3 19.67 59 46 7 6 0 0 0
............................................................TGAGGTAGTAGGTTGTATAGTCT............................................................................................................. 23 1 2 19.50 39 24 6 6 2 1 0
............................................................TGAGGTAGTAGGTTGTATAGTCA............................................................................................................. 23 2 2 19.50 39 22 7 2 6 0 2
............................................................TGAGGTAGTAGGTTCTATAGT............................................................................................................... 21 1 2 19.50 39 25 3 4 5 0 2
............................................................TGAGGTAGTAGGCTGTATAGTTA............................................................................................................. 23 2 2 19.00 38 29 4 2 3 0 0
............................................................TGAGGTAGTAGGTTATATAGT............................................................................................................... 21 1 2 19.00 38 16 11 6 2 1 2
...............................................................GGTAGTAGGTTGTATGGTTTGA........................................................................................................... 22 2 2 18.50 37 37 0 0 0 0 0
............................................................TGAGGTACTAGGTTGTATAGT............................................................................................................... 21 1 2 18.50 37 27 2 2 3 2 1
............................................................TGAGGTAGTTGGTTGTATAGT............................................................................................................... 21 1 3 18.33 55 35 7 9 0 2 2
............................................................TGAGGTAGTAGGTTGTATGGTTGT............................................................................................................ 24 2 4 18.00 72 36 10 12 3 9 2
............................................................TGAGGTAGAAGGTTGTATAGT............................................................................................................... 21 1 3 17.67 53 31 10 9 3 0 0
...........................................................ATGAGGTAGTAGGTTGTATGGTT.............................................................................................................. 23 1 2 17.50 35 13 12 8 2 0 0
............................................................TGGGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 17.50 35 23 5 5 2 0 0
.............................................................TAGGTAGTAGGTTGTATAGTT.............................................................................................................. 21 1 2 17.50 35 27 2 5 0 0 1
............................................................TGAGGTAGTAGGTTGTGTGGTTTTAT.......................................................................................................... 26 3 2 17.50 35 8 9 9 7 2 0
............................................................TGAGGTAGTAGGTTGTACAGTTT............................................................................................................. 23 1 3 17.00 51 38 5 5 3 0 0
............................................................TGAGGTAGTATGTTGTATAGTTA............................................................................................................. 23 2 2 17.00 34 26 1 0 5 1 1
............................................................TGAGGTAGTGGGTTGTATAGTTA............................................................................................................. 23 2 2 17.00 34 23 3 1 6 0 1
...............................................................................................................CTATACAACCTACTGTCTTTCT........................................................... 22 2 6 17.00 102 13 24 49 3 7 6
................................................................GTAGTAGGTTGTATAGTT.............................................................................................................. 18 0 2 16.50 33 2 6 5 2 17 1
............................................................TGAGGTAGTAGGTTGTATAGCTA............................................................................................................. 23 2 2 16.50 33 28 0 2 3 0 0
............................................................TTAGGTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 16.50 33 23 6 3 1 0 0
............................................................TGAGGTAGTAAGTTGTATAGT............................................................................................................... 21 1 3 16.00 48 32 6 8 1 0 1
............................................................TGAGGGAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 16.00 32 19 1 0 12 0 0
.................................................................................................................ATACAACCTACTGTCTTTCCT.......................................................... 21 1 1 16.00 16 2 3 8 3 0 0
............................................................TGAGGTTGTAGGTTGTATAGT............................................................................................................... 21 1 2 16.00 32 18 8 5 0 1 0
............................................................TGAGGTAGTCGGTTGTATAG................................................................................................................ 20 1 3 16.00 48 38 0 0 10 0 0
............................................................TGGGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 16.00 32 18 4 4 5 1 0
..................................................................................TTAGGGTCACACCCACCACTGGGA...................................................................................... 24 0 1 16.00 16 0 9 7 0 0 0
............................................................TGAGGTAGTAGGTTGTATAGCTT............................................................................................................. 23 1 2 15.50 31 21 3 1 5 1 0
............................................................TGAGGTGGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 15.50 31 18 3 3 7 0 0
............................................................TGAGGTAGTAGGTTGTATAGTTTAA........................................................................................................... 25 1 2 15.00 30 9 2 2 15 1 1
............................................................TGAGGTAGTAGGTTGTATGGTTATA........................................................................................................... 25 2 1 15.00 15 8 3 4 0 0 0
............................................................TGAGGTAGTAGGTTGTATGGTTAGA........................................................................................................... 25 3 2 15.00 30 6 9 15 0 0 0
............................................................TGAGGTAGTAGGTTGTATGGTTTTA........................................................................................................... 25 1 1 15.00 15 5 4 5 0 1 0
............................................................CGAGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 15.00 30 22 5 2 1 0 0
............................................................TGAGGTGGTAGGTTGTATAG................................................................................................................ 20 1 2 15.00 30 25 1 2 2 0 0
............................................................TGAGGTAGTAGGTTGTATAGAAA............................................................................................................. 23 3 7 14.86 104 46 22 18 8 8 2
............................................................TGAGGTAGTAGGTTGTATGGTTATT........................................................................................................... 25 3 2 14.50 29 5 14 10 0 0 0
............................................................TAAGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 14.50 29 21 3 3 2 0 0
............................................................TGAGGTAGTGGGTTGTATAGTTT............................................................................................................. 23 1 2 14.50 29 20 3 2 4 0 0
..........................................................TCTGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 24 2 3 14.33 43 33 2 3 3 0 2
............................................................TGATGTAGTAGGTTGTATAGT............................................................................................................... 21 1 4 14.00 56 38 9 3 6 0 0
............................................................TGAGGTAGTAGGTTGTATAGGTT............................................................................................................. 23 1 2 14.00 28 22 3 1 2 0 0
............................................................TGAGGTAGTAGGTTGTTTAGT............................................................................................................... 21 1 2 14.00 28 18 2 5 2 1 0
............................................................TGAGGTAGGAGGTTGTATAGTGT............................................................................................................. 23 2 3 13.67 41 36 1 1 3 0 0
............................................................TGAGATAGTAGGTTGTATAGT............................................................................................................... 21 1 2 13.50 27 12 6 7 2 0 0
............................................................TGAGGGAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 13.50 27 17 1 1 7 1 0
............................................................TGCGGTAGTAGGTTGTGTGGTTTT............................................................................................................ 24 3 2 13.50 27 26 0 0 1 0 0
............................................................TGAGGTAGTAGGTTGTATCGTTA............................................................................................................. 23 2 3 13.00 39 36 2 0 1 0 0
............................................................TGAGGAAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 13.00 26 19 1 1 5 0 0
............................................................TGAGGTAGTAGGCTGTATAG................................................................................................................ 20 1 2 13.00 26 20 0 1 3 1 1
............................................................TGAGGTAGTAGGTTGTATGGTATT............................................................................................................ 24 2 2 13.00 26 15 4 5 0 2 0
............................................................TGAGGTAGTAGGTTGTATGGTTCT............................................................................................................ 24 2 2 13.00 26 9 10 7 0 0 0
............................................................TGAGGTAGGCGGTTGTATAGTTT............................................................................................................. 23 2 3 13.00 39 32 0 0 6 1 0
............................................................CGAGGTAGTAGGTTGTATAG................................................................................................................ 20 1 2 13.00 26 18 2 2 3 1 0
............................................................TGAAGTAGTAGGTTGTATAGT............................................................................................................... 21 1 3 13.00 39 26 4 5 3 1 0
.............................................................GAGGTAGTAGGTTGTGTGGTTTT............................................................................................................ 23 2 4 12.75 51 33 6 10 2 0 0
............................................................TGAGGTAGTAGGTCGTATAGTTT............................................................................................................. 23 1 2 12.50 25 9 9 4 3 0 0
............................................................TAAGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 12.50 25 16 4 4 1 0 0
............................................................TGAGTTAGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 12.50 25 24 0 0 1 0 0
............................................................TGAGGTAGTAGGTTGTACAG................................................................................................................ 20 1 4 12.50 50 44 1 4 1 0 0
............................................................TGCGGCAGTAGGTTGTATAGTT.............................................................................................................. 22 2 2 12.50 25 25 0 0 0 0 0
............................................................TGAGGTCGTAGGTTGTATAG................................................................................................................ 20 1 2 12.50 25 21 0 0 3 1 0
............................................................TGCGGTAGGAGGTTGTATAGTTT............................................................................................................. 23 2 3 12.33 37 35 0 0 2 0 0
............................................................TGAGGTAGTACGTTGTATAGT............................................................................................................... 21 1 2 12.00 24 14 3 3 3 1 0
............................................................TGAGGTAATAGGTTGTATAGT............................................................................................................... 21 1 2 12.00 24 16 4 2 1 1 0
............................................................TGAGGTAGTAGGTAGTATAGT............................................................................................................... 21 1 2 12.00 24 13 5 4 1 1 0
............................................................TGAGGTCGTAGGTTGTATAGTTA............................................................................................................. 23 2 2 12.00 24 20 0 0 4 0 0
............................................................TGAGGTAGTAGGTTGTAAAA................................................................................................................ 20 2 11 11.55 127 24 16 46 5 29 7
............................................................TGAGTTAGTAGGTTGTATAGT............................................................................................................... 21 1 2 11.50 23 16 1 4 2 0 0
............................................................TGAGGTAGTATGTTGTATAGTTT............................................................................................................. 23 1 2 11.50 23 19 0 1 3 0 0
............................................................TGAGGTAGTAGGTCGTATAGTTA............................................................................................................. 23 2 2 11.50 23 16 2 2 3 0 0
............................................................TGAGGTAGTAAGTTGTATAGTTT............................................................................................................. 23 1 2 11.50 23 15 1 2 5 0 0
............................................................TGAGGTAGTAGGTTGTGTGGTTTGA........................................................................................................... 25 3 2 11.50 23 11 4 5 1 2 0
............................................................TGAGGGAGTAGGTTGTATAG................................................................................................................ 20 1 2 11.00 22 13 0 1 8 0 0
.............................................................GAGGTAGTAGGTTGTATAGTA.............................................................................................................. 21 1 2 11.00 22 13 7 2 0 0 0
............................................................TGAGGTAGTAGGTTGTATAGTTTTAGGGTC...................................................................................................... 30 0 1 11.00 11 0 4 0 1 0 6
............................................................TGAGGTAGCAGGTTGTATAGTTA............................................................................................................. 23 2 3 11.00 33 24 5 2 1 1 0
................................................................................................................TATACAACCTACTGTCTTTCCT.......................................................... 22 1 1 11.00 11 0 3 7 0 0 1
............................................................TGAGTTAGTAGGTTGTATAGTTT............................................................................................................. 23 1 2 11.00 22 15 1 0 6 0 0
...........................................................ATGAGGTAGTAGGTTGTGTGGTT.............................................................................................................. 23 2 2 11.00 22 7 5 7 3 0 0
............................................................TGAGGTAGTAGGTTGAATAGT............................................................................................................... 21 1 3 10.67 32 18 7 3 4 0 0
..............................................................AGGTAGTAGGTTGTATAGTTA............................................................................................................. 21 1 2 10.50 21 18 0 0 2 1 0
............................................................TGAGGTAGTAGGTTGTCTAGTTT............................................................................................................. 23 1 2 10.50 21 17 2 0 2 0 0
............................................................TGAGGTAGTAGGTTGTGTGGTTTTAA.......................................................................................................... 26 3 2 10.50 21 9 4 3 4 1 0
............................................................TGAGGTAGTAGGTTGTATAGTTTG............................................................................................................ 24 1 2 10.00 20 15 0 1 3 0 1
............................................................TGAGGTAGTAGGTTGTGTCGTT.............................................................................................................. 22 2 4 10.00 40 37 1 0 2 0 0
.............................................................GAGGTAGGAGGTTGTATAGTTT............................................................................................................. 22 1 3 10.00 30 15 3 12 0 0 0
............................................................TGAGGTAGTAGGTTGTATTGTTT............................................................................................................. 23 1 3 10.00 30 27 1 1 1 0 0

Anti-sense strand reads

CACCACGAGTCGACACCAGGGAAAAGTCGTAAGTGACACCTGCAAGAGAAGTGACACCCTACTCCATCATCCAACATATCAAAATCCCAGTGTGGGTGGTGACCCTCTATTGATATGTTAGATGACAGAAAGGATTGCACTATCTTTTTAGACGTAGGTCTGTCGTAGTAGGTTCGTAGTGAGTTGTAGTCA

*********************************************.(((((((..(((((.(((((((((((((((((((((.....(((...((((....)))).)))))))))))))))))))))))))))))..)))).)))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR066809

ovary		 SRR139075

testes		 SRR066810

testes		 SRR1274763

ovary		 SRR139076

testes
.............................................................................................................TTGATATGTTAGATGA................................................................... 16 0 6 6.33 38 12 11 4 9 2
.............................................................................................................TTGATATGTTAGATG.................................................................... 15 0 9 3.78 34 25 1 6 2 0
..............................................................TCCGTCATCCAACATATC................................................................................................................ 18 1 4 1.25 5 1 3 0 0 1
...........................................................................................................TATTGATATGTTAGATG.................................................................... 17 0 1 1.00 1 0 0 1 0 0
............................................................................................................ATTGATATGTTAGATG.................................................................... 16 0 1 1.00 1 1 0 0 0 0
............................................................................................................ATTGATATGTTAGATGA................................................................... 17 0 1 1.00 1 1 0 0 0 0
..............................................................................................................TGATATGTTAGATGA................................................................... 15 0 8 0.63 5 2 0 1 2 0
............................................................................................................ATTGATATGTTAGATGACG................................................................. 19 1 2 0.50 1 0 1 0 0 0
.............................................................................................................TTGATATGTTAGATGAGAGAGA............................................................. 22 2 2 0.50 1 0 0 1 0 0
.............................................................................................................TTGATATGTTAGATGACGGAGA............................................................. 22 2 3 0.33 1 1 0 0 0 0
............................................................................................................ATTGATATGTTAGATGACGGAGC............................................................. 23 3 4 0.25 1 0 1 0 0 0
..............................................................................................................TGATATGTTAGATGACGGA............................................................... 19 1 4 0.25 1 0 0 0 0 1
............................................................................................................ATTGATATGTTAGATGAT.................................................................. 18 1 13 0.23 3 1 0 1 1 0
.............................................................TTCCGTCATCCAACATATC................................................................................................................ 19 2 20 0.15 3 0 1 0 1 1
............................................................................................................ATTGATATGTTAGAT..................................................................... 15 0 7 0.14 1 0 1 0 0 0
..........................................................CTTTTCCGTCATCCAACATATC................................................................................................................ 22 3 20 0.05 1 0 0 0 0 1
............................................................................................................ATTGATATGTTAGATGT................................................................... 17 1 20 0.05 1 0 1 0 0 0
............................................................................................................ATTGATATGTTGGATGA................................................................... 17 1 20 0.05 1 0 0 0 1 0

Generated: 09/01/2015 at 11:35 AM