ID:

rno-mir-9b-3

 Coordinate:

chr1:141229342-141229456 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.4 -54.2 -54.1
mature
  1. chr1:141229405-141229425 -
  2. chr2:11884721-11884741 -
  3. chr2:187582851-187582871 -
star

Sense Strand Reads

TTCTCTGGGCTCCTCTGGCTCCTGTGGCCAGGGCGGCCGGCCGGGCCATCGCACGCAGAAGTTGTTAGAGTCATTTCTACTTTCGGTTATCTAGCTTTATGACGGCTCTGTGGCACTCATACAGCTAGATAACCAAAGAGAGAAACGGGCCTCCCATTCGCCGGCACCGCTGCCGCGCTGTGGGCCCCACGTGCTGCCGCCGACCGGGCGCGGGG
***********************************((((((((((((...((.....(((..((..((.(((.(((((.((((.((((((((((((.(((((..(((....)))..))))).))))))))))))))))..)))))..)))))..))))))).))).)))..)))).))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
.................................................................................TTCGGTTATCTAGCTTTATGA................................................................................................................. 21 0 3 0.33 1 1

Anti-sense strand reads

AAGAGACCCGAGGAGACCGAGGACACCGGTCCCGCCGGCCGGCCCGGTAGCGTGCGTCTTCAACAATCTCAGTAAAGATGAAAGCCAATAGATCGAAATACTGCCGAGACACCGTGAGTATGTCGATCTATTGGTTTCTCTCTTTGCCCGGAGGGTAAGCGGCCGTGGCGACGGCGCGACACCCGGGGTGCACGACGGCGGCTGGCCCGCGCCCC
***********************************((((((((((((...((.....(((..((..((.(((.(((((.((((.((((((((((((.(((((..(((....)))..))))).))))))))))))))))..)))))..)))))..))))))).))).)))..)))).))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
....................................................................................................................AGTATGTCGATCTATTGGTTTCT............................................................................ 23 0 3 93.00 279 277 2
..............................................................................TGAAAGCCAATAGATCGAAATA................................................................................................................... 22 0 3 40.33 121 10 111
............................................................................TATGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 1 3 8.67 26 23 3
.............................................................................ATGAAAGCCAATAGATCGAAATA................................................................................................................... 23 0 3 7.00 21 20 1
....................................................................................................................TGTATGTCGATCTATTGGTTTCT............................................................................ 23 1 3 6.67 20 20 0
..............................................................................TGAAAGCCAATAGATCGAAAT.................................................................................................................... 21 0 3 6.67 20 4 16
.............................................................................ATGAAAGCCAATAGATCGAAAT.................................................................................................................... 22 0 3 6.00 18 16 2
.....................................................................................................................GTATGTCGATCTATTGGTTTCT............................................................................ 22 0 3 5.67 17 16 1
............................................................................TATGAAAGCCAATAGATCGAAATA................................................................................................................... 24 1 3 4.00 12 11 1
...................................................................................................................TAGTATGTCGATCTATTGGTTTCT............................................................................ 24 1 3 3.33 10 8 2
...................................................................................................................AAGTATGTCGATCTATTGGTTTCT............................................................................ 24 1 3 3.33 10 10 0
..................................................................................................................AAAGTATGTCGATCTATTGGTTTCT............................................................................ 25 2 3 3.00 9 8 1
......................................................................................................................TATGTCGATCTATTGGTTTCT............................................................................ 21 0 3 2.67 8 8 0
...............................................................................GAAAGCCAATAGATCGAAATA................................................................................................................... 21 0 3 2.00 6 0 6
....................................................................................................................AGTATGTCGATCTATTGGTTTC............................................................................. 22 0 3 1.67 5 5 0
.............................................................................TTGAAAGCCAATAGATCGAAATA................................................................................................................... 23 1 3 1.67 5 0 5
....................................................................................................................AGTATGTCGCTCTATTGGTTTCT............................................................................ 23 1 3 1.33 4 4 0
...................................................................................................................TTGTATGTCGATCTATTGGTTTCT............................................................................ 24 2 4 1.00 4 4 0
..............................................................................TGAAAGCCAATAGATCGAAATAA.................................................................................................................. 23 1 3 1.00 3 0 3
..................................................................................................................TGAGTATGTCGATCTATTGGTTTCT............................................................................ 25 0 3 0.67 2 2 0
......................................................................................................................AATGTCGATCTATTGGTTTCT............................................................................ 21 1 3 0.67 2 1 1
.....................................................................................................................TTATGTCGATCTATTGGTTTC............................................................................. 21 1 3 0.67 2 2 0
.............................................................................ATGAAAGCCAATAGATCGAAATAA.................................................................................................................. 24 1 3 0.67 2 2 0
....................................................................................................................AGTAAGTCGATCTATTGGTTTCT............................................................................ 23 1 3 0.67 2 2 0
.............................................................................ATGAAAGCTAATAGATCGAAAT.................................................................................................................... 22 1 3 0.67 2 2 0
...........................................................................TTATGAAAGCCAATAGATCGAAAT.................................................................................................................... 24 2 4 0.50 2 2 0
..............................................................................TGAAAGCCAATAGATCGAATTA................................................................................................................... 22 1 3 0.33 1 0 1
..................................................................................................................GAAGTATGTCGATTTATTGGTTTCT............................................................................ 25 3 3 0.33 1 1 0
....................................................................................................................AGTATGTTGATCTATTGGTTTCT............................................................................ 23 1 3 0.33 1 1 0
..............................................................................TGAAAGCCAATAGATC......................................................................................................................... 16 0 3 0.33 1 0 1
..................................................................................................................TTTGTATGTCGATCTATTGGTTTCT............................................................................ 25 2 3 0.33 1 1 0
....................................................................................................................AGTATGTCGACCTATTGGTTTCT............................................................................ 23 1 3 0.33 1 1 0
....................................................................................................................AGCATGCCGATCTATTGGTTTCT............................................................................ 23 2 3 0.33 1 1 0
....................................................................................................................AGTATGTCGATCTATCGGTTTCT............................................................................ 23 1 3 0.33 1 1 0
............................................................................TTTGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 2 3 0.33 1 0 1
...................................................................................................................AAGTATGTCGATTTATTGGTTTCT............................................................................ 24 2 3 0.33 1 1 0
....................................................................................................................AGTATGTCAATCTAATGGTTTCT............................................................................ 23 2 3 0.33 1 1 0
.............................................................................AAGAAAGCCAATAGATCGAAATA................................................................................................................... 23 1 3 0.33 1 1 0
..................................................................................................................ATAGTATGTCGATCTATTGGTTTCT............................................................................ 25 2 3 0.33 1 1 0
....................................................................................................................AGTATGTCGTTCTATTGGTTTCT............................................................................ 23 1 3 0.33 1 1 0
.............................................................................ATGAAAGCCAATAGATCGACATA................................................................................................................... 23 1 3 0.33 1 1 0
..............................................................................TGAAAGCCAATAGATCGATAT.................................................................................................................... 21 1 3 0.33 1 0 1
...................................................................................................................TAGTATGTCGATCTATTGCTTTCT............................................................................ 24 2 3 0.33 1 1 0
............................................................................TATGAAAGCCAATAGATCGAAA..................................................................................................................... 22 1 3 0.33 1 0 1
.................................................................................................................AAAAGTATGTCGATCTATTGGTTTC............................................................................. 25 3 3 0.33 1 0 1
.............................................................................ATGAAAGCCCATAGATCGAAATA................................................................................................................... 23 1 3 0.33 1 1 0
..................................................................................AGCCAATAGATCGAAATA................................................................................................................... 18 0 3 0.33 1 0 1
...............................................................................GAAAGCCAATAGATCGAAAT.................................................................................................................... 20 0 3 0.33 1 1 0
...................................................................................................................ATGTATGTCGATCTATTGGTTTCT............................................................................ 24 2 3 0.33 1 1 0
..............................................................................TGAAAGCCAATAGATCGAAATAAA................................................................................................................. 24 2 3 0.33 1 0 1
..................................................................................................................GAAGTATGTCGATCTATTGGTTTCT............................................................................ 25 2 3 0.33 1 1 0
....................................................................................................................AGTATGTCGATATATTGGTTTCT............................................................................ 23 1 3 0.33 1 1 0
............................................................................CATGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 1 3 0.33 1 1 0
....................................................................................................................AGTATGTCGATCTATTGGTATCT............................................................................ 23 1 3 0.33 1 1 0
..............................................................................TGAAAGCCAATAGATCGAAA..................................................................................................................... 20 0 3 0.33 1 1 0
..............................................................................TGAAAGCCCATAGATCGAAATA................................................................................................................... 22 1 3 0.33 1 0 1
.............................................................................ATGAAAGCCAGTAGATCGAAAG.................................................................................................................... 22 2 4 0.25 1 1 0
....................................................................................................................TGTATGTCGATATATTGGTTTCT............................................................................ 23 2 4 0.25 1 1 0
.................................................................................................................TCTAGTATGTCGATCTATTGGTT............................................................................... 23 3 8 0.25 2 2 0
....................................................................................CCAATAGATCGAAATA................................................................................................................... 16 0 4 0.25 1 0 1
..............................................................................TGAAAGCGAATAGATCGACATA................................................................................................................... 22 2 5 0.20 1 0 1
.....................................................................................CAATAGATCGAAATA................................................................................................................... 15 0 8 0.13 1 0 1

Generated: 04/30/2015 at 05:31 PM