ID:

rno-mir-9b-2

 Coordinate:

chr2:11884658-11884775 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.7 -49.6
mature
  1. chr1:141229405-141229425 -
  2. chr2:11884721-11884741 -
  3. chr2:187582851-187582871 -
star

Sense Strand Reads

CCTGACCTTTCTGGTTTTTACTGTCTCTTGACTGTAGTCTTTCTTTCCGGAGCACTCCTCGGTGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTCCCTCACAAGGCTGTCTTCCTCTGGCTGGACTCCAGATCCGGATCCTCGTTGGTTTGGGGGAAGC
***********************************......(((..((((((.((.(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).)))..))....))))))..)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
....................................................................................TTCGGTTATCTAGCTTTATGAAGT.............................................................................................................. 24 1 2 0.50 1 1
....................................................................................TTCGGTTATCTAGCTTTATGA................................................................................................................. 21 0 3 0.33 1 1

Anti-sense strand reads

GGACTGGAAAGACCAAAAATGACAGAGAACTGACATCAGAAAGAAAGGCCTCGTGAGGAGCCACTAGAACTTCCTCAAAAATGAAAGCCAATAGATCGAAATACTTCTGGTTATGTGAGTATGTCGATCTATTGGTTTCTATTGTTGAGCGAAGGGAGTGTTCCGACAGAAGGAGACCGACCTGAGGTCTAGGCCTAGGAGCAACCAAACCCCCTTCG
***********************************......(((..((((((.((.(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).)))..))....))))))..)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.....................................................................................................................AGTATGTCGATCTATTGGTTTCT.............................................................................. 23 0 3 93.00 279 277 2
.................................................................................TGAAAGCCAATAGATCGAAATA................................................................................................................... 22 0 3 40.33 121 10 111
...............................................................................TATGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 1 3 8.67 26 23 3
................................................................................ATGAAAGCCAATAGATCGAAATA................................................................................................................... 23 0 3 7.00 21 20 1
.................................................................................TGAAAGCCAATAGATCGAAAT.................................................................................................................... 21 0 3 6.67 20 4 16
.....................................................................................................................TGTATGTCGATCTATTGGTTTCT.............................................................................. 23 1 3 6.67 20 20 0
................................................................................ATGAAAGCCAATAGATCGAAAT.................................................................................................................... 22 0 3 6.00 18 16 2
......................................................................................................................GTATGTCGATCTATTGGTTTCT.............................................................................. 22 0 3 5.67 17 16 1
...............................................................................AATGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 0 2 5.00 10 9 1
...............................................................................TATGAAAGCCAATAGATCGAAATA................................................................................................................... 24 1 3 4.00 12 11 1
....................................................................................................................AAGTATGTCGATCTATTGGTTTCT.............................................................................. 24 1 3 3.33 10 10 0
....................................................................................................................TAGTATGTCGATCTATTGGTTTCT.............................................................................. 24 1 3 3.33 10 8 2
...................................................................................................................AAAGTATGTCGATCTATTGGTTTCT.............................................................................. 25 2 3 3.00 9 8 1
.......................................................................................................................TATGTCGATCTATTGGTTTCT.............................................................................. 21 0 3 2.67 8 8 0
...............................................................................AATGAAAGCCAATAGATCGAAATA................................................................................................................... 24 0 2 2.00 4 4 0
..................................................................................GAAAGCCAATAGATCGAAATA................................................................................................................... 21 0 3 2.00 6 0 6
................................................................................TTGAAAGCCAATAGATCGAAATA................................................................................................................... 23 1 3 1.67 5 0 5
.....................................................................................................................AGTATGTCGATCTATTGGTTTC............................................................................... 22 0 3 1.67 5 5 0
.....................................................................................................................AGTATGTCGCTCTATTGGTTTCT.............................................................................. 23 1 3 1.33 4 4 0
...............................................................................AATGAAAGCCAATAGATCGAAA..................................................................................................................... 22 0 2 1.00 2 2 0
.................................................................................TGAAAGCCAATAGATCGAAATAA.................................................................................................................. 23 1 3 1.00 3 0 3
....................................................................................................................TTGTATGTCGATCTATTGGTTTCT.............................................................................. 24 2 4 1.00 4 4 0
...................................................................................................................TGAGTATGTCGATCTATTGGTTTCT.............................................................................. 25 0 3 0.67 2 2 0
................................................................................ATGAAAGCTAATAGATCGAAAT.................................................................................................................... 22 1 3 0.67 2 2 0
.......................................................................................................................AATGTCGATCTATTGGTTTCT.............................................................................. 21 1 3 0.67 2 1 1
.....................................................................................................................AGTAAGTCGATCTATTGGTTTCT.............................................................................. 23 1 3 0.67 2 2 0
................................................................................ATGAAAGCCAATAGATCGAAATAA.................................................................................................................. 24 1 3 0.67 2 2 0
......................................................................................................................TTATGTCGATCTATTGGTTTC............................................................................... 21 1 3 0.67 2 2 0
......................................................................................................................GTATGTCGATCTATTGGTTTCTAA............................................................................ 24 1 2 0.50 1 1 0
..............................................................................AAATGAAAGCCAATAGATCGAAATA................................................................................................................... 25 0 2 0.50 1 1 0
.................................................................................................................TCTAAGTATGTCGATCTATTGGTT................................................................................. 24 2 2 0.50 1 1 0
...............................................................................AATGAAAGCCAGTAGATCGAAAT.................................................................................................................... 23 1 2 0.50 1 1 0
..............................................................................TTATGAAAGCCAATAGATCGAAAT.................................................................................................................... 24 2 4 0.50 2 2 0
...............................................................................AATGAAAGCCAATAGATCGAA...................................................................................................................... 21 0 2 0.50 1 1 0
.....................................................................................................................AGTATGTCGATCTATTGGTTTCTA............................................................................. 24 0 2 0.50 1 1 0
...............................................................................AATGAACGCCAATAGATCGAAAT.................................................................................................................... 23 1 2 0.50 1 1 0
...................................................................................................................GAAGTATGTCGATCTATTGGTTTCT.............................................................................. 25 2 3 0.33 1 1 0
..................................................................................................................AAAAGTATGTCGATCTATTGGTTTC............................................................................... 25 3 3 0.33 1 0 1
.................................................................................TGAAAGCCCATAGATCGAAATA................................................................................................................... 22 1 3 0.33 1 0 1
.................................................................................TGAAAGCCAATAGATCGATAT.................................................................................................................... 21 1 3 0.33 1 0 1
...................................................................................................................ATAGTATGTCGATCTATTGGTTTCT.............................................................................. 25 2 3 0.33 1 1 0
.....................................................................................................................AGTATGTCGTTCTATTGGTTTCT.............................................................................. 23 1 3 0.33 1 1 0
.....................................................................................................................AGTATGTCGATCTATCGGTTTCT.............................................................................. 23 1 3 0.33 1 1 0
...................................................................................................................GAAGTATGTCGATTTATTGGTTTCT.............................................................................. 25 3 3 0.33 1 1 0
................................................................................ATGAAAGCCAATAGATCGACATA................................................................................................................... 23 1 3 0.33 1 1 0
....................................................................................................................ATGTATGTCGATCTATTGGTTTCT.............................................................................. 24 2 3 0.33 1 1 0
...................................................................................................................TTTGTATGTCGATCTATTGGTTTCT.............................................................................. 25 2 3 0.33 1 1 0
....................................................................................................................AAGTATGTCGATTTATTGGTTTCT.............................................................................. 24 2 3 0.33 1 1 0
.....................................................................................................................AGTATGTTGATCTATTGGTTTCT.............................................................................. 23 1 3 0.33 1 1 0
...............................................................................CATGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 1 3 0.33 1 1 0
.....................................................................................................................AGTATGTCGATATATTGGTTTCT.............................................................................. 23 1 3 0.33 1 1 0
.....................................................................................................................AGTATGTCAATCTAATGGTTTCT.............................................................................. 23 2 3 0.33 1 1 0
...............................................................................TATGAAAGCCAATAGATCGAAA..................................................................................................................... 22 1 3 0.33 1 0 1
................................................................................ATGAAAGCCCATAGATCGAAATA................................................................................................................... 23 1 3 0.33 1 1 0
.....................................................................................................................AGTATGTCGACCTATTGGTTTCT.............................................................................. 23 1 3 0.33 1 1 0
.....................................................................................................................AGCATGCCGATCTATTGGTTTCT.............................................................................. 23 2 3 0.33 1 1 0
....................................................................................................................TAGTATGTCGATCTATTGCTTTCT.............................................................................. 24 2 3 0.33 1 1 0
.................................................................................TGAAAGCCAATAGATCGAAATAAA................................................................................................................. 24 2 3 0.33 1 0 1
.................................................................................TGAAAGCCAATAGATCGAAA..................................................................................................................... 20 0 3 0.33 1 1 0
.................................................................................TGAAAGCCAATAGATCGAATTA................................................................................................................... 22 1 3 0.33 1 0 1
.....................................................................................................................AGTATGTCGATCTATTGGTATCT.............................................................................. 23 1 3 0.33 1 1 0
.....................................................................................AGCCAATAGATCGAAATA................................................................................................................... 18 0 3 0.33 1 0 1
...............................................................................TTTGAAAGCCAATAGATCGAAAT.................................................................................................................... 23 2 3 0.33 1 0 1
.................................................................................TGAAAGCCAATAGATC......................................................................................................................... 16 0 3 0.33 1 0 1
................................................................................AAGAAAGCCAATAGATCGAAATA................................................................................................................... 23 1 3 0.33 1 1 0
..................................................................................GAAAGCCAATAGATCGAAAT.................................................................................................................... 20 0 3 0.33 1 1 0
.......................................................................................CCAATAGATCGAAATA................................................................................................................... 16 0 4 0.25 1 0 1
................................................................................ATGAAAGCCAGTAGATCGAAAG.................................................................................................................... 22 2 4 0.25 1 1 0
.....................................................................................................................TGTATGTCGATATATTGGTTTCT.............................................................................. 23 2 4 0.25 1 1 0
..................................................................................................................TCTAGTATGTCGATCTATTGGTT................................................................................. 23 3 8 0.25 2 2 0
.................................................................................TGAAAGCGAATAGATCGACATA................................................................................................................... 22 2 5 0.20 1 0 1
........................................................................................CAATAGATCGAAATA................................................................................................................... 15 0 8 0.13 1 0 1

Generated: 04/30/2015 at 05:40 PM