ID:

rno-mir-9b-1

 Coordinate:

chr2:187582790-187582897 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.5 -43.4 -42.9
mature
  1. chr1:141229405-141229425 -
  2. chr2:11884721-11884741 -
  3. chr2:187582851-187582871 -
star

Sense Strand Reads

GGCGTGGCTCTCCCTCCTGCAGCTGCCGCCACCAACGTTCCAGGCCCTCTGCGCAGTGTATGGGGTTATTTTTACTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAGATAACAACCAACCCCGCCTCCTGGCCGCCGCCTCCTCTTCCACGCAGCCTCCCGGCCGCCGCCTGGACCTCCGCA
***********************************......((((.....((.(((....(((((((....(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).....)))))))....)))))....)))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
............................................................................TTCGGTTATCTAGCTTTATGAAGT............................................................................................................ 24 1 2 0.50 1 1
............................................................................TTCGGTTATCTAGCTTTATGA............................................................................................................... 21 0 3 0.33 1 1

Anti-sense strand reads

CCGCACCGAGAGGGAGGACGTCGACGGCGGTGGTTGCAAGGTCCGGGAGACGCGTCACATACCCCAATAAAAATGAAAGCCAATAGATCGAAATACTTCTGAGGTGTGGTGAGTATGTCGATCTATTGGTTTCTATTGTTGGTTGGGGCGGAGGACCGGCGGCGGAGGAGAAGGTGCGTCGGAGGGCCGGCGGCGGACCTGGAGGCGT
***********************************......((((.....((.(((....(((((((....(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).....)))))))....)))))....)))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...............................................................................................................AGTATGTCGATCTATTGGTTTCT.......................................................................... 23 0 3 93.00 279 277 2
.........................................................................TGAAAGCCAATAGATCGAAATA................................................................................................................. 22 0 3 40.33 121 10 111
.......................................................................TATGAAAGCCAATAGATCGAAAT.................................................................................................................. 23 1 3 8.67 26 23 3
........................................................................ATGAAAGCCAATAGATCGAAATA................................................................................................................. 23 0 3 7.00 21 20 1
...............................................................................................................TGTATGTCGATCTATTGGTTTCT.......................................................................... 23 1 3 6.67 20 20 0
.........................................................................TGAAAGCCAATAGATCGAAAT.................................................................................................................. 21 0 3 6.67 20 4 16
........................................................................ATGAAAGCCAATAGATCGAAAT.................................................................................................................. 22 0 3 6.00 18 16 2
................................................................................................................GTATGTCGATCTATTGGTTTCT.......................................................................... 22 0 3 5.67 17 16 1
.......................................................................AATGAAAGCCAATAGATCGAAAT.................................................................................................................. 23 0 2 5.00 10 9 1
.......................................................................TATGAAAGCCAATAGATCGAAATA................................................................................................................. 24 1 3 4.00 12 11 1
..............................................................................................................AAGTATGTCGATCTATTGGTTTCT.......................................................................... 24 1 3 3.33 10 10 0
..............................................................................................................TAGTATGTCGATCTATTGGTTTCT.......................................................................... 24 1 3 3.33 10 8 2
.............................................................................................................AAAGTATGTCGATCTATTGGTTTCT.......................................................................... 25 2 3 3.00 9 8 1
.................................................................................................................TATGTCGATCTATTGGTTTCT.......................................................................... 21 0 3 2.67 8 8 0
..........................................................................GAAAGCCAATAGATCGAAATA................................................................................................................. 21 0 3 2.00 6 0 6
.......................................................................AATGAAAGCCAATAGATCGAAATA................................................................................................................. 24 0 2 2.00 4 4 0
........................................................................TTGAAAGCCAATAGATCGAAATA................................................................................................................. 23 1 3 1.67 5 0 5
...............................................................................................................AGTATGTCGATCTATTGGTTTC........................................................................... 22 0 3 1.67 5 5 0
...............................................................................................................AGTATGTCGCTCTATTGGTTTCT.......................................................................... 23 1 3 1.33 4 4 0
.........................................................................TGAAAGCCAATAGATCGAAATAA................................................................................................................ 23 1 3 1.00 3 0 3
..............................................................................................................TTGTATGTCGATCTATTGGTTTCT.......................................................................... 24 2 4 1.00 4 4 0
.......................................................................AATGAAAGCCAATAGATCGAAA................................................................................................................... 22 0 2 1.00 2 2 0
.............................................................................................................TGAGTATGTCGATCTATTGGTTTCT.......................................................................... 25 0 3 0.67 2 2 0
........................................................................ATGAAAGCCAATAGATCGAAATAA................................................................................................................ 24 1 3 0.67 2 2 0
........................................................................ATGAAAGCTAATAGATCGAAAT.................................................................................................................. 22 1 3 0.67 2 2 0
...............................................................................................................AGTAAGTCGATCTATTGGTTTCT.......................................................................... 23 1 3 0.67 2 2 0
................................................................................................................TTATGTCGATCTATTGGTTTC........................................................................... 21 1 3 0.67 2 2 0
.................................................................................................................AATGTCGATCTATTGGTTTCT.......................................................................... 21 1 3 0.67 2 1 1
.......................................................................AATGAACGCCAATAGATCGAAAT.................................................................................................................. 23 1 2 0.50 1 1 0
.......................................................................AATGAAAGCCAATAGATCGAA.................................................................................................................... 21 0 2 0.50 1 1 0
......................................................................TTATGAAAGCCAATAGATCGAAAT.................................................................................................................. 24 2 4 0.50 2 2 0
.......................................................................AATGAAAGCCAGTAGATCGAAAT.................................................................................................................. 23 1 2 0.50 1 1 0
...............................................................................................................AGTATGTCGATCTATTGGTTTCTA......................................................................... 24 0 2 0.50 1 1 0
......................................................................AAATGAAAGCCAATAGATCGAAATA................................................................................................................. 25 0 2 0.50 1 1 0
................................................................................................................GTATGTCGATCTATTGGTTTCTAA........................................................................ 24 1 2 0.50 1 1 0
...............................................................................................................AGTATGTCGATATATTGGTTTCT.......................................................................... 23 1 3 0.33 1 1 0
.......................................................................CATGAAAGCCAATAGATCGAAAT.................................................................................................................. 23 1 3 0.33 1 1 0
..............................................................................................................AAGTATGTCGATTTATTGGTTTCT.......................................................................... 24 2 3 0.33 1 1 0
.......................................................................TTTGAAAGCCAATAGATCGAAAT.................................................................................................................. 23 2 3 0.33 1 0 1
...............................................................................................................AGTATGTCGATCTATCGGTTTCT.......................................................................... 23 1 3 0.33 1 1 0
.........................................................................TGAAAGCCAATAGATCGATAT.................................................................................................................. 21 1 3 0.33 1 0 1
..........................................................................GAAAGCCAATAGATCGAAAT.................................................................................................................. 20 0 3 0.33 1 1 0
.........................................................................TGAAAGCCCATAGATCGAAATA................................................................................................................. 22 1 3 0.33 1 0 1
.............................................................................................................ATAGTATGTCGATCTATTGGTTTCT.......................................................................... 25 2 3 0.33 1 1 0
...............................................................................................................AGCATGCCGATCTATTGGTTTCT.......................................................................... 23 2 3 0.33 1 1 0
........................................................................ATGAAAGCCAATAGATCGACATA................................................................................................................. 23 1 3 0.33 1 1 0
...............................................................................................................AGTATGTCAATCTAATGGTTTCT.......................................................................... 23 2 3 0.33 1 1 0
.........................................................................TGAAAGCCAATAGATC....................................................................................................................... 16 0 3 0.33 1 0 1
.........................................................................TGAAAGCCAATAGATCGAAATAAA............................................................................................................... 24 2 3 0.33 1 0 1
.............................................................................................................GAAGTATGTCGATTTATTGGTTTCT.......................................................................... 25 3 3 0.33 1 1 0
...............................................................................................................AGTATGTCGATCTATTGGTATCT.......................................................................... 23 1 3 0.33 1 1 0
.........................................................................TGAAAGCCAATAGATCGAATTA................................................................................................................. 22 1 3 0.33 1 0 1
..............................................................................................................ATGTATGTCGATCTATTGGTTTCT.......................................................................... 24 2 3 0.33 1 1 0
...............................................................................................................AGTATGTCGACCTATTGGTTTCT.......................................................................... 23 1 3 0.33 1 1 0
.............................................................................AGCCAATAGATCGAAATA................................................................................................................. 18 0 3 0.33 1 0 1
.............................................................................................................GAAGTATGTCGATCTATTGGTTTCT.......................................................................... 25 2 3 0.33 1 1 0
...............................................................................................................AGTATGTTGATCTATTGGTTTCT.......................................................................... 23 1 3 0.33 1 1 0
.......................................................................TATGAAAGCCAATAGATCGAAA................................................................................................................... 22 1 3 0.33 1 0 1
.........................................................................TGAAAGCCAATAGATCGAAA................................................................................................................... 20 0 3 0.33 1 1 0
.............................................................................................................TTTGTATGTCGATCTATTGGTTTCT.......................................................................... 25 2 3 0.33 1 1 0
........................................................................AAGAAAGCCAATAGATCGAAATA................................................................................................................. 23 1 3 0.33 1 1 0
............................................................................................................AAAAGTATGTCGATCTATTGGTTTC........................................................................... 25 3 3 0.33 1 0 1
...............................................................................................................AGTATGTCGTTCTATTGGTTTCT.......................................................................... 23 1 3 0.33 1 1 0
..............................................................................................................TAGTATGTCGATCTATTGCTTTCT.......................................................................... 24 2 3 0.33 1 1 0
........................................................................ATGAAAGCCCATAGATCGAAATA................................................................................................................. 23 1 3 0.33 1 1 0
...............................................................................................................TGTATGTCGATATATTGGTTTCT.......................................................................... 23 2 4 0.25 1 1 0
............................................................................................................TCTAGTATGTCGATCTATTGGTT............................................................................. 23 3 8 0.25 2 2 0
...............................................................................CCAATAGATCGAAATA................................................................................................................. 16 0 4 0.25 1 0 1
........................................................................ATGAAAGCCAGTAGATCGAAAG.................................................................................................................. 22 2 4 0.25 1 1 0
.........................................................................TGAAAGCGAATAGATCGACATA................................................................................................................. 22 2 5 0.20 1 0 1
................................................................................CAATAGATCGAAATA................................................................................................................. 15 0 8 0.13 1 0 1

Generated: 04/30/2015 at 05:43 PM