ID:

rno-mir-9a-3

 Coordinate:

chr1:141229353-141229442 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.1
mature
  1. chr1:141229368-141229390 +
  2. chr2:11884686-11884708 +
  3. chr2:187582814-187582836 +
star
  1. chr1:141229407-141229428 +
  2. chr2:11884723-11884744 +
  3. chr2:187582853-187582874 +

Sense Strand Reads

GTCGGCGGCAGCACGTGGGGCCCACAGCGCGGCAGCGGTGCCGGCGAATGGGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTAACAACTTCTGCGTGCGATGGCCCGGCCGGCCGCCCTGGCCACAGGAGCCAG
**************************************************((((...(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).))))))).))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.................................................................TCTTTGGTTATCTAGCTGTATGA...................................................................................................... 23 0 3 93.00 279 277 2
........................................................................................................ATAAAGCTAGATAACCGAAAGT................................................................ 22 0 3 40.33 121 10 111
.........................................................................................................TAAAGCTAGATAACCGAAAGTAT.............................................................. 23 1 3 8.67 26 23 3
........................................................................................................ATAAAGCTAGATAACCGAAAGTA............................................................... 23 0 3 7.00 21 20 1
.................................................................TCTTTGGTTATCTAGCTGTATGT...................................................................................................... 23 1 3 6.67 20 20 0
.........................................................................................................TAAAGCTAGATAACCGAAAGT................................................................ 21 0 3 6.67 20 4 16
.........................................................................................................TAAAGCTAGATAACCGAAAGTA............................................................... 22 0 3 6.00 18 16 2
.................................................................TCTTTGGTTATCTAGCTGTATG....................................................................................................... 22 0 3 5.67 17 16 1
........................................................................................................ATAAAGCTAGATAACCGAAAGTAT.............................................................. 24 1 3 4.00 12 11 1
.................................................................TCTTTGGTTATCTAGCTGTATGAT..................................................................................................... 24 1 3 3.33 10 8 2
.................................................................TCTTTGGTTATCTAGCTGTATGAA..................................................................................................... 24 1 3 3.33 10 10 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAA.................................................................................................... 25 2 3 3.00 9 8 1
.................................................................TCTTTGGTTATCTAGCTGTAT........................................................................................................ 21 0 3 2.67 8 8 0
........................................................................................................ATAAAGCTAGATAACCGAAAG................................................................. 21 0 3 2.00 6 0 6
..................................................................CTTTGGTTATCTAGCTGTATGA...................................................................................................... 22 0 3 1.67 5 5 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTT............................................................... 23 1 3 1.67 5 0 5
.................................................................TCTTTGGTTATCTCGCTGTATGA...................................................................................................... 23 1 3 1.33 4 4 0
.................................................................TCTTTGGTTATCTAGCTGTATGTT..................................................................................................... 24 2 4 1.00 4 4 0
.......................................................................................................AATAAAGCTAGATAACCGAAAGT................................................................ 23 1 3 1.00 3 0 3
.................................................................TCTTTGGTTATCTAGCTGTATGAGT.................................................................................................... 25 0 3 0.67 2 2 0
.................................................................TCTTTGGTTATCTAGCTGTAA........................................................................................................ 21 1 3 0.67 2 1 1
..................................................................CTTTGGTTATCTAGCTGTATT....................................................................................................... 21 1 3 0.67 2 2 0
.......................................................................................................AATAAAGCTAGATAACCGAAAGTA............................................................... 24 1 3 0.67 2 2 0
.................................................................TCTTTGGTTATCTAGCTGAATGA...................................................................................................... 23 1 3 0.67 2 2 0
.........................................................................................................TAAAGCTAGATAATCGAAAGTA............................................................... 22 1 3 0.67 2 2 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTATT............................................................. 24 2 4 0.50 2 2 0
........................................................................................................ATTAAGCTAGATAACCGAAAGT................................................................ 22 1 3 0.33 1 0 1
.................................................................TCTTTGGTTATTTAGCTGTATGAAG.................................................................................................... 25 3 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGTTGTATGA...................................................................................................... 23 1 3 0.33 1 1 0
..............................................................................................................CTAGATAACCGAAAGT................................................................ 16 0 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTAGCTGTATGTTT.................................................................................................... 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCCAGCTGTATGA...................................................................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCCGTACGA...................................................................................................... 23 2 3 0.33 1 1 0
.................................................................TCTTTGGCTATCTAGCTGTATGA...................................................................................................... 23 1 3 0.33 1 1 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTTT.............................................................. 23 2 3 0.33 1 0 1
.................................................................TCTTTGGTTATTTAGCTGTATGAA..................................................................................................... 24 2 3 0.33 1 1 0
.................................................................TCTTTGGTAATCTAACTGTATGA...................................................................................................... 23 2 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATAACCGAAAGAA............................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGATA.................................................................................................... 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTTGCTGTATGA...................................................................................................... 23 1 3 0.33 1 1 0
........................................................................................................ATACAGCTAGATAACCGAAAGTA............................................................... 23 1 3 0.33 1 1 0
.........................................................................................................TATAGCTAGATAACCGAAAGT................................................................ 21 1 3 0.33 1 0 1
.................................................................TCTTTCGTTATCTAGCTGTATGAT..................................................................................................... 24 2 3 0.33 1 1 0
..........................................................................................................AAAGCTAGATAACCGAAAGTAT.............................................................. 22 1 3 0.33 1 0 1
..................................................................CTTTGGTTATCTAGCTGTATGAAAA................................................................................................... 25 3 3 0.33 1 0 1
........................................................................................................ATAAAGCTAGATACCCGAAAGTA............................................................... 23 1 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATAACCGA.................................................................... 18 0 3 0.33 1 0 1
.........................................................................................................TAAAGCTAGATAACCGAAAG................................................................. 20 0 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGTA..................................................................................................... 24 2 3 0.33 1 1 0
......................................................................................................AAATAAAGCTAGATAACCGAAAGT................................................................ 24 2 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTAGCTGTATGAAG.................................................................................................... 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATATAGCTGTATGA...................................................................................................... 23 1 3 0.33 1 1 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAC.............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTATGGTTATCTAGCTGTATGA...................................................................................................... 23 1 3 0.33 1 1 0
..........................................................................................................AAAGCTAGATAACCGAAAGT................................................................ 20 0 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATACCCGAAAGT................................................................ 22 1 3 0.33 1 0 1
.........................................................................................................GAAAGCTAGATGACCGAAAGTA............................................................... 22 2 4 0.25 1 1 0
.................................................................TCTTTGGTTATATAGCTGTATGT...................................................................................................... 23 2 4 0.25 1 1 0
....................................................................TTGGTTATCTAGCTGTATGATCT................................................................................................... 23 3 8 0.25 2 2 0
........................................................................................................ATAAAGCTAGATAACC...................................................................... 16 0 4 0.25 1 0 1
........................................................................................................ATACAGCTAGATAAGCGAAAGT................................................................ 22 2 5 0.20 1 0 1
........................................................................................................ATAAAGCTAGATAAC....................................................................... 15 0 8 0.13 1 0 1

Anti-sense strand reads

CAGCCGCCGTCGTGCACCCCGGGTGTCGCGCCGTCGCCACGGCCGCTTACCCTCCGGGCAAAGAGAGAAACCAATAGATCGACATACTCACGGTGTCTCGGCAGTATTTCGATCTATTGGCTTTCATCTTTACTGAGATTGTTGAAGACGCACGCTACCGGGCCGGCCGGCGGGACCGGTGTCCTCGGTC
*************************************************((((...(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).))))))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
......................................................................................................AGTATTTCGATCTATTGGCTT................................................................... 21 0 3 0.33 1 1

Generated: 04/30/2015 at 05:32 PM