ID:

rno-mir-9a-2

 Coordinate:

chr2:11884671-11884757 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.5 -38.5 -38.3
mature
  1. chr1:141229368-141229390 +
  2. chr2:11884686-11884708 +
  3. chr2:187582814-187582836 +
star
  1. chr1:141229407-141229428 +
  2. chr2:11884723-11884744 +
  3. chr2:187582853-187582874 +

Sense Strand Reads

CAACGAGGATCCGGATCTGGAGTCCAGCCAGAGGAAGACAGCCTTGTGAGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCACCGAGGAGTGCTCCGGAAAGAAAGACTACAGTCAAGAGACAGTA
**************************************************.((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.................................................................TCTTTGGTTATCTAGCTGTATGA................................................................................................... 23 0 3 93.00 279 277 2
......................................................................................................ATAAAGCTAGATAACCGAAAGT............................................................... 22 0 3 40.33 121 10 111
.......................................................................................................TAAAGCTAGATAACCGAAAGTAT............................................................. 23 1 3 8.67 26 23 3
......................................................................................................ATAAAGCTAGATAACCGAAAGTA.............................................................. 23 0 3 7.00 21 20 1
.......................................................................................................TAAAGCTAGATAACCGAAAGT............................................................... 21 0 3 6.67 20 4 16
.................................................................TCTTTGGTTATCTAGCTGTATGT................................................................................................... 23 1 3 6.67 20 20 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTA.............................................................. 22 0 3 6.00 18 16 2
.................................................................TCTTTGGTTATCTAGCTGTATG.................................................................................................... 22 0 3 5.67 17 16 1
.......................................................................................................TAAAGCTAGATAACCGAAAGTAA............................................................. 23 0 2 5.00 10 9 1
......................................................................................................ATAAAGCTAGATAACCGAAAGTAT............................................................. 24 1 3 4.00 12 11 1
.................................................................TCTTTGGTTATCTAGCTGTATGAA.................................................................................................. 24 1 3 3.33 10 10 0
.................................................................TCTTTGGTTATCTAGCTGTATGAT.................................................................................................. 24 1 3 3.33 10 8 2
.................................................................TCTTTGGTTATCTAGCTGTATGAAA................................................................................................. 25 2 3 3.00 9 8 1
.................................................................TCTTTGGTTATCTAGCTGTAT..................................................................................................... 21 0 3 2.67 8 8 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAA............................................................. 24 0 2 2.00 4 4 0
......................................................................................................ATAAAGCTAGATAACCGAAAG................................................................ 21 0 3 2.00 6 0 6
......................................................................................................ATAAAGCTAGATAACCGAAAGTT.............................................................. 23 1 3 1.67 5 0 5
..................................................................CTTTGGTTATCTAGCTGTATGA................................................................................................... 22 0 3 1.67 5 5 0
.................................................................TCTTTGGTTATCTCGCTGTATGA................................................................................................... 23 1 3 1.33 4 4 0
........................................................................................................AAAGCTAGATAACCGAAAGTAA............................................................. 22 0 2 1.00 2 2 0
.....................................................................................................AATAAAGCTAGATAACCGAAAGT............................................................... 23 1 3 1.00 3 0 3
.................................................................TCTTTGGTTATCTAGCTGTATGTT.................................................................................................. 24 2 4 1.00 4 4 0
.................................................................TCTTTGGTTATCTAGCTGTATGAGT................................................................................................. 25 0 3 0.67 2 2 0
.......................................................................................................TAAAGCTAGATAATCGAAAGTA.............................................................. 22 1 3 0.67 2 2 0
.................................................................TCTTTGGTTATCTAGCTGTAA..................................................................................................... 21 1 3 0.67 2 1 1
.................................................................TCTTTGGTTATCTAGCTGAATGA................................................................................................... 23 1 3 0.67 2 2 0
.....................................................................................................AATAAAGCTAGATAACCGAAAGTA.............................................................. 24 1 3 0.67 2 2 0
..................................................................CTTTGGTTATCTAGCTGTATT.................................................................................................... 21 1 3 0.67 2 2 0
...............................................................AATCTTTGGTTATCTAGCTGTATG.................................................................................................... 24 1 2 0.50 1 1 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAAA............................................................ 25 0 2 0.50 1 1 0
....................................................................TTGGTTATCTAGCTGTATGAATCT............................................................................................... 24 2 2 0.50 1 1 0
.......................................................................................................TAAAGCTAGATGACCGAAAGTAA............................................................. 23 1 2 0.50 1 1 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTATT............................................................ 24 2 4 0.50 2 2 0
.........................................................................................................AAGCTAGATAACCGAAAGTAA............................................................. 21 0 2 0.50 1 1 0
................................................................ATCTTTGGTTATCTAGCTGTATGA................................................................................................... 24 0 2 0.50 1 1 0
.......................................................................................................TAAAGCTAGATAACCGCAAGTAA............................................................. 23 1 2 0.50 1 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAG................................................................................................. 25 2 3 0.33 1 1 0
..................................................................CTTTGGTTATCTAGCTGTATGAAAA................................................................................................ 25 3 3 0.33 1 0 1
......................................................................................................ATAAAGCTAGATACCCGAAAGT............................................................... 22 1 3 0.33 1 0 1
.......................................................................................................TATAGCTAGATAACCGAAAGT............................................................... 21 1 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTAGCTGTATGATA................................................................................................. 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTTGCTGTATGA................................................................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTGGCTATCTAGCTGTATGA................................................................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATTTAGCTGTATGAAG................................................................................................. 25 3 3 0.33 1 1 0
......................................................................................................ATACAGCTAGATAACCGAAAGTA.............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGTA.................................................................................................. 24 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGTTT................................................................................................. 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATTTAGCTGTATGAA.................................................................................................. 24 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGTTGTATGA................................................................................................... 23 1 3 0.33 1 1 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAC............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATATAGCTGTATGA................................................................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTAATCTAACTGTATGA................................................................................................... 23 2 3 0.33 1 1 0
........................................................................................................AAAGCTAGATAACCGAAAGTAT............................................................. 22 1 3 0.33 1 0 1
......................................................................................................ATAAAGCTAGATACCCGAAAGTA.............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATCCAGCTGTATGA................................................................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCCGTACGA................................................................................................... 23 2 3 0.33 1 1 0
.................................................................TCTTTCGTTATCTAGCTGTATGAT.................................................................................................. 24 2 3 0.33 1 1 0
....................................................................................................AAATAAAGCTAGATAACCGAAAGT............................................................... 24 2 3 0.33 1 0 1
........................................................................................................AAAGCTAGATAACCGAAAGT............................................................... 20 0 3 0.33 1 1 0
......................................................................................................ATTAAGCTAGATAACCGAAAGT............................................................... 22 1 3 0.33 1 0 1
.................................................................TCTATGGTTATCTAGCTGTATGA................................................................................................... 23 1 3 0.33 1 1 0
......................................................................................................ATAAAGCTAGATAACCGA................................................................... 18 0 3 0.33 1 0 1
.......................................................................................................TAAAGCTAGATAACCGAAAGTTT............................................................. 23 2 3 0.33 1 0 1
............................................................................................................CTAGATAACCGAAAGT............................................................... 16 0 3 0.33 1 0 1
......................................................................................................ATAAAGCTAGATAACCGAAAGAA.............................................................. 23 1 3 0.33 1 1 0
.......................................................................................................TAAAGCTAGATAACCGAAAG................................................................ 20 0 3 0.33 1 1 0
......................................................................................................ATAAAGCTAGATAACC..................................................................... 16 0 4 0.25 1 0 1
.......................................................................................................GAAAGCTAGATGACCGAAAGTA.............................................................. 22 2 4 0.25 1 1 0
.................................................................TCTTTGGTTATATAGCTGTATGT................................................................................................... 23 2 4 0.25 1 1 0
....................................................................TTGGTTATCTAGCTGTATGATCT................................................................................................ 23 3 8 0.25 2 2 0
......................................................................................................ATACAGCTAGATAAGCGAAAGT............................................................... 22 2 5 0.20 1 0 1
......................................................................................................ATAAAGCTAGATAAC...................................................................... 15 0 8 0.13 1 0 1

Anti-sense strand reads

GTTGCTCCTAGGCCTAGACCTCAGGTCGGTCTCCTTCTGTCGGAACACTCCCTTCGCTCAACAATAGAAACCAATAGATCGACATACTCACATAACCAGAAGTATTTCGATCTATTGGCTTTCATTTTTGAGGAAGTTCTAGTGGCTCCTCACGAGGCCTTTCTTTCTGATGTCAGTTCTCTGTCAT
************************************************.((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
.................................................................................................TGAAGTATTTCGATCTATTGGCTT.................................................................. 24 1 2 0.50 1 1
....................................................................................................AGTATTTCGATCTATTGGCTT.................................................................. 21 0 3 0.33 1 1

Generated: 04/30/2015 at 05:40 PM