ID:

rno-mir-9a-1

 Coordinate:

chr2:187582799-187582887 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.7 -39.6 -39.5
mature
  1. chr1:141229368-141229390 +
  2. chr2:11884686-11884708 +
  3. chr2:187582814-187582836 +
star
  1. chr1:141229407-141229428 +
  2. chr2:11884723-11884744 +
  3. chr2:187582853-187582874 +

Sense Strand Reads

CCAGGCGGCGGCCGGGAGGCTGCGTGGAAGAGGAGGCGGCGGCCAGGAGGCGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACTGCGCAGAGGGCCTGGAACGTTGGTGGCGGCAGCTGCAGGAGGGA
**************************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.................................................................TCTTTGGTTATCTAGCTGTATGA..................................................................................................... 23 0 3 93.00 279 277 2
........................................................................................................ATAAAGCTAGATAACCGAAAGT............................................................... 22 0 3 40.33 121 10 111
.........................................................................................................TAAAGCTAGATAACCGAAAGTAT............................................................. 23 1 3 8.67 26 23 3
........................................................................................................ATAAAGCTAGATAACCGAAAGTA.............................................................. 23 0 3 7.00 21 20 1
.................................................................TCTTTGGTTATCTAGCTGTATGT..................................................................................................... 23 1 3 6.67 20 20 0
.........................................................................................................TAAAGCTAGATAACCGAAAGT............................................................... 21 0 3 6.67 20 4 16
.........................................................................................................TAAAGCTAGATAACCGAAAGTA.............................................................. 22 0 3 6.00 18 16 2
.................................................................TCTTTGGTTATCTAGCTGTATG...................................................................................................... 22 0 3 5.67 17 16 1
.........................................................................................................TAAAGCTAGATAACCGAAAGTAA............................................................. 23 0 2 5.00 10 9 1
........................................................................................................ATAAAGCTAGATAACCGAAAGTAT............................................................. 24 1 3 4.00 12 11 1
.................................................................TCTTTGGTTATCTAGCTGTATGAA.................................................................................................... 24 1 3 3.33 10 10 0
.................................................................TCTTTGGTTATCTAGCTGTATGAT.................................................................................................... 24 1 3 3.33 10 8 2
.................................................................TCTTTGGTTATCTAGCTGTATGAAA................................................................................................... 25 2 3 3.00 9 8 1
.................................................................TCTTTGGTTATCTAGCTGTAT....................................................................................................... 21 0 3 2.67 8 8 0
........................................................................................................ATAAAGCTAGATAACCGAAAG................................................................ 21 0 3 2.00 6 0 6
........................................................................................................ATAAAGCTAGATAACCGAAAGTAA............................................................. 24 0 2 2.00 4 4 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTT.............................................................. 23 1 3 1.67 5 0 5
..................................................................CTTTGGTTATCTAGCTGTATGA..................................................................................................... 22 0 3 1.67 5 5 0
.................................................................TCTTTGGTTATCTCGCTGTATGA..................................................................................................... 23 1 3 1.33 4 4 0
.......................................................................................................AATAAAGCTAGATAACCGAAAGT............................................................... 23 1 3 1.00 3 0 3
.................................................................TCTTTGGTTATCTAGCTGTATGTT.................................................................................................... 24 2 4 1.00 4 4 0
..........................................................................................................AAAGCTAGATAACCGAAAGTAA............................................................. 22 0 2 1.00 2 2 0
.................................................................TCTTTGGTTATCTAGCTGTATGAGT................................................................................................... 25 0 3 0.67 2 2 0
.......................................................................................................AATAAAGCTAGATAACCGAAAGTA.............................................................. 24 1 3 0.67 2 2 0
.........................................................................................................TAAAGCTAGATAATCGAAAGTA.............................................................. 22 1 3 0.67 2 2 0
.................................................................TCTTTGGTTATCTAGCTGAATGA..................................................................................................... 23 1 3 0.67 2 2 0
..................................................................CTTTGGTTATCTAGCTGTATT...................................................................................................... 21 1 3 0.67 2 2 0
.................................................................TCTTTGGTTATCTAGCTGTAA....................................................................................................... 21 1 3 0.67 2 1 1
.........................................................................................................TAAAGCTAGATAACCGCAAGTAA............................................................. 23 1 2 0.50 1 1 0
...........................................................................................................AAGCTAGATAACCGAAAGTAA............................................................. 21 0 2 0.50 1 1 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTATT............................................................ 24 2 4 0.50 2 2 0
.........................................................................................................TAAAGCTAGATGACCGAAAGTAA............................................................. 23 1 2 0.50 1 1 0
................................................................ATCTTTGGTTATCTAGCTGTATGA..................................................................................................... 24 0 2 0.50 1 1 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTAAA............................................................ 25 0 2 0.50 1 1 0
...............................................................AATCTTTGGTTATCTAGCTGTATG...................................................................................................... 24 1 2 0.50 1 1 0
.................................................................TCTTTGGTTATATAGCTGTATGA..................................................................................................... 23 1 3 0.33 1 1 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAC............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATTTAGCTGTATGAA.................................................................................................... 24 2 3 0.33 1 1 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTTT............................................................. 23 2 3 0.33 1 0 1
.................................................................TCTTTGGCTATCTAGCTGTATGA..................................................................................................... 23 1 3 0.33 1 1 0
.........................................................................................................TATAGCTAGATAACCGAAAGT............................................................... 21 1 3 0.33 1 0 1
.........................................................................................................TAAAGCTAGATAACCGAAAG................................................................ 20 0 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATACCCGAAAGT............................................................... 22 1 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTAGCTGTATGATA................................................................................................... 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCCGTACGA..................................................................................................... 23 2 3 0.33 1 1 0
........................................................................................................ATACAGCTAGATAACCGAAAGTA.............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTAATCTAACTGTATGA..................................................................................................... 23 2 3 0.33 1 1 0
..............................................................................................................CTAGATAACCGAAAGT............................................................... 16 0 3 0.33 1 0 1
......................................................................................................AAATAAAGCTAGATAACCGAAAGT............................................................... 24 2 3 0.33 1 0 1
.................................................................TCTTTGGTTATTTAGCTGTATGAAG................................................................................................... 25 3 3 0.33 1 1 0
.................................................................TCTATGGTTATCTAGCTGTATGA..................................................................................................... 23 1 3 0.33 1 1 0
........................................................................................................ATTAAGCTAGATAACCGAAAGT............................................................... 22 1 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTAGCTGTATGTA.................................................................................................... 24 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCCAGCTGTATGA..................................................................................................... 23 1 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATAACCGA................................................................... 18 0 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTAGCTGTATGAAG................................................................................................... 25 2 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGTTGTATGA..................................................................................................... 23 1 3 0.33 1 1 0
..........................................................................................................AAAGCTAGATAACCGAAAGTAT............................................................. 22 1 3 0.33 1 0 1
..........................................................................................................AAAGCTAGATAACCGAAAGT............................................................... 20 0 3 0.33 1 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGTTT................................................................................................... 25 2 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATAACCGAAAGAA.............................................................. 23 1 3 0.33 1 1 0
..................................................................CTTTGGTTATCTAGCTGTATGAAAA.................................................................................................. 25 3 3 0.33 1 0 1
.................................................................TCTTTGGTTATCTTGCTGTATGA..................................................................................................... 23 1 3 0.33 1 1 0
.................................................................TCTTTCGTTATCTAGCTGTATGAT.................................................................................................... 24 2 3 0.33 1 1 0
........................................................................................................ATAAAGCTAGATACCCGAAAGTA.............................................................. 23 1 3 0.33 1 1 0
.................................................................TCTTTGGTTATATAGCTGTATGT..................................................................................................... 23 2 4 0.25 1 1 0
....................................................................TTGGTTATCTAGCTGTATGATCT.................................................................................................. 23 3 8 0.25 2 2 0
........................................................................................................ATAAAGCTAGATAACC..................................................................... 16 0 4 0.25 1 0 1
.........................................................................................................GAAAGCTAGATGACCGAAAGTA.............................................................. 22 2 4 0.25 1 1 0
........................................................................................................ATACAGCTAGATAAGCGAAAGT............................................................... 22 2 5 0.20 1 0 1
........................................................................................................ATAAAGCTAGATAAC...................................................................... 15 0 8 0.13 1 0 1

Anti-sense strand reads

GGTCCGCCGCCGGCCCTCCGACGCACCTTCTCCTCCGCCGCCGGTCCTCCGCCCCAACCAACAATAGAAACCAATAGATCGACATACTCACCACACCTCAGAAGTATTTCGATCTATTGGCTTTCATTTTTATTGGGGTATGTGACGCGTCTCCCGGACCTTGCAACCACCGCCGTCGACGTCCTCCCT
************************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
...................................................................................................TGAAGTATTTCGATCTATTGGCTT.................................................................. 24 1 2 0.50 1 1
......................................................................................................AGTATTTCGATCTATTGGCTT.................................................................. 21 0 3 0.33 1 1

Generated: 04/30/2015 at 05:44 PM