ID:

rno-mir-99a

Coordinate:

chr11:16052153-16052233 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.6 -43.4 -43.1

Sense Strand Reads

AGATGTTTAGAACAAATGCTACATTAGTAAAAAGTCCATGTGGGATGATGCCCATTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCACAAGCTCGTTTCTATGGGTCTGTGGCAGTGTGGTAATCTGACAGAGCACTATGATGTAAGTGCTACTCAATCACATCTCAGT
***********************************************.(((((((((.((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).)))).))))).))))...********************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
GSM1528818
Adult_testes_Mili_IP
..............................................................AACCCGTAGATCCGATCTTGTGA................................................................................................ 23 1 1 11339.00 11339 10682 528 129
..............................................................AACCCGTAGATCCGATCTTGTG................................................................................................. 22 0 1 9695.00 9695 9062 472 161
..............................................................AACCCGTAGATCCGATCTTGT.................................................................................................. 21 0 1 6512.00 6512 5619 849 44
..............................................................AACCCGTAGATCCGATCTTGTGT................................................................................................ 23 1 1 5181.00 5181 4761 285 135
..............................................................AACCCGTAGATCCGATCTTG................................................................................................... 20 0 1 646.00 646 226 419 1
.............................................................AAACCCGTAGATCCGATCTTGT.................................................................................................. 22 0 1 639.00 639 597 41 1
..............................................................AACCCGTAGATCCGATCTTGTGAA............................................................................................... 24 2 1 535.00 535 505 30 0
.............................................................AAACCCGTAGATCCGATCTTGTG................................................................................................. 23 0 1 230.00 230 226 4 0
.............................................................AAACCCGTAGATCCGATCTTGTGA................................................................................................ 24 1 1 202.00 202 199 3 0
..............................................................AACCCGTAGATCCGATCTTGTGTA............................................................................................... 24 2 1 196.00 196 196 0 0
...............................................................ACCCGTAGATCCGATCTTGTG................................................................................................. 21 0 1 180.00 180 165 13 2
..............................................................AACCCGTAGATCCGATCTTGTA................................................................................................. 22 1 1 179.00 179 178 1 0
...............................................................ACCCGTAGATCCGATCTTGTGA................................................................................................ 22 1 1 178.00 178 163 14 1
..............................................................AACCCGTAGATCCGATCTTGTAA................................................................................................ 23 2 1 175.00 175 173 2 0
..............................................................AACCCGTAGATCCGATCTTGTGTT............................................................................................... 24 1 1 175.00 175 170 5 0
..............................................................AACCCGTAGATCCGATCTT.................................................................................................... 19 0 1 150.00 150 42 108 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGA........................................................... 23 1 1 144.00 144 141 3 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGT........................................................... 23 0 1 136.00 136 136 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAT............................................................................................... 24 1 1 122.00 122 120 2 0
.............................................................AAACCCGTAGATCCGATCTTGTGT................................................................................................ 24 1 1 115.00 115 113 2 0
..............................................................AACCCGTAGATCCGCTCTTGTGA................................................................................................ 23 2 1 103.00 103 100 2 1
...............................................................ACCCGTAGATCCGATCTTGTGT................................................................................................ 22 1 1 103.00 103 95 8 0
...............................................................ACCCGTAGATCCGATCTTGT.................................................................................................. 20 0 1 73.00 73 60 13 0
..............................................................AACCCGTAGATCCGCTCTTGTG................................................................................................. 22 1 1 62.00 62 58 2 2
..............................................................AACCCGTAGATCCGATCTTGTGG................................................................................................ 23 0 1 59.00 59 54 5 0
...............................................................ACCCGTAGATCCGATCTTGTGAA............................................................................................... 23 2 1 54.00 54 53 1 0
..............................................................AACCCGTAGATACGATCTTGTG................................................................................................. 22 1 1 50.00 50 48 0 2
..............................................................AACCCGTAGATCCGATCTTGTAT................................................................................................ 23 2 1 49.00 49 49 0 0
..............................................................AACCCGTAGATCCAATCTTGTGA................................................................................................ 23 2 1 48.00 48 47 0 1
..............................................................AACCCGTAGATCCGCTCTTGTGT................................................................................................ 23 2 1 48.00 48 43 1 4
..............................................................AACCCGTAGATACGATCTTGTGA................................................................................................ 23 2 1 40.00 40 40 0 0
..............................................................AACCCGTAGATCCGCTCTTGT.................................................................................................. 21 1 1 40.00 40 37 2 1
..............................................................AACCCGTAGATCCGATCTTGTCA................................................................................................ 23 2 1 39.00 39 39 0 0
..............................................................AACCCGTAGATCCGATCTTGTT................................................................................................. 22 1 1 37.00 37 36 1 0
..............................................................AACCCGTAGATCCGATCTTGTC................................................................................................. 22 1 1 36.00 36 34 0 2
..............................................................AACCCGTAGATCCGATCTTGTGC................................................................................................ 23 1 2 35.00 70 62 1 7
.............................................................AAACCCGTAGATCCGATCTTGTA................................................................................................. 23 1 1 31.00 31 31 0 0
..............................................................AACCCGTAGATCCGAT....................................................................................................... 16 0 1 30.00 30 1 29 0
..............................................................AACCCGTAGACCCGATCTTGTGA................................................................................................ 23 2 1 29.00 29 27 1 1
.............................................................AAACCCGTAGATCCGATCTTG................................................................................................... 21 0 1 29.00 29 19 9 1
..............................................................AACCCGTAGATACGATCTTGTGT................................................................................................ 23 2 1 28.00 28 28 0 0
..............................................................AACCCGTAGATCCAATCTTGTG................................................................................................. 22 1 1 28.00 28 28 0 0
..............................................................AACCCGTAGATCCCATCTTGTGA................................................................................................ 23 2 1 26.00 26 26 0 0
..............................................................AACCCGTAGATCCGATCTTGA.................................................................................................. 21 1 1 26.00 26 14 12 0
..............................................................AACCCGTAGATCCGATCTTGTGTAT.............................................................................................. 25 3 1 25.00 25 25 0 0
..............................................................AACCCGTAGATCCCATCTTGTG................................................................................................. 22 1 1 25.00 25 22 0 3
..............................................................AACCCGTAGATCCGATCT..................................................................................................... 18 0 1 25.00 25 5 20 0
..............................................................AACCCGTAGATCCGATCTTGTTA................................................................................................ 23 2 1 22.00 22 22 0 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGAA.......................................................... 24 2 1 21.00 21 21 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTAA.............................................................................................. 25 3 1 21.00 21 21 0 0
..............................................................AACCCGTAGATCCGATC...................................................................................................... 17 0 1 21.00 21 2 19 0
................................................................CCCGTAGATCCGATCTTGTGT................................................................................................ 21 1 1 21.00 21 21 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAAA.............................................................................................. 25 3 1 21.00 21 17 4 0
..............................................................CACCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 21.00 21 21 0 0
..................................................................CGTAGATCCGATCTTGT.................................................................................................. 17 0 1 20.00 20 1 19 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTG............................................................ 22 0 1 20.00 20 20 0 0
..............................................................AACCCGTAGATACGATCTTGT.................................................................................................. 21 1 1 20.00 20 20 0 0
..............................................................AACCCGTAGACCCGATCTTGTG................................................................................................. 22 1 1 19.00 19 18 1 0
.............................................................AAACCCGTAGATCCGATCTTGTAA................................................................................................ 24 2 1 19.00 19 19 0 0
..............................................................AACCCGTCGATCCGATCTTGTGA................................................................................................ 23 2 1 19.00 19 18 0 1
..............................................................AACCCGTAGATCCGATTTTGTGA................................................................................................ 23 2 1 19.00 19 19 0 0
..............................................................AACCCGTAGATCCGATATTGTGA................................................................................................ 23 2 1 18.00 18 17 0 1
..............................................................AACCCGTAGATCCGATATTGTG................................................................................................. 22 1 1 18.00 18 17 0 1
..............................................................AACACGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 18.00 18 18 0 0
..............................................................AACCCGTAGATTCGATCTTGTGA................................................................................................ 23 2 1 18.00 18 17 0 1
...................................................................................................CAAGCTCGTTTCTATGGGTCTGTAA......................................................... 25 2 1 17.00 17 17 0 0
.................................................................CCGTAGATCCGATCTTGT.................................................................................................. 18 0 1 17.00 17 1 16 0
..............................................................AAACCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 17.00 17 16 1 0
................................................................CCCGTAGATCCGATCTTGTGA................................................................................................ 21 1 1 16.00 16 15 1 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGT........................................................... 22 0 1 16.00 16 16 0 0
..............................................................AACCCGTAGACCCGATCTTGT.................................................................................................. 21 1 1 16.00 16 13 3 0
...............................................................ACCCGTAGATCCGATCTTG................................................................................................... 19 0 1 16.00 16 11 5 0
..............................................................AACCCGTAGATCCAATCTTGT.................................................................................................. 21 1 1 15.00 15 15 0 0
.................................................................CCGTAGATCCGATCTTGTG................................................................................................. 19 0 1 15.00 15 11 4 0
..................................................................CGTAGATCCGATCTTGTGA................................................................................................ 19 1 1 15.00 15 8 7 0
..............................................................AACCCGTAGATCCGATCTTGGGA................................................................................................ 23 2 1 15.00 15 13 2 0
................................................................CCCGTAGATCCGATCTTGTG................................................................................................. 20 0 1 15.00 15 15 0 0
..............................................................AACCCGTCGATCCGATCTTGTG................................................................................................. 22 1 1 15.00 15 12 1 2
..............................................................CACCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 15.00 15 12 2 1
..............................................................AAACCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 14.00 14 13 0 1
..............................................................AACCCGTAGATCCCATCTTGT.................................................................................................. 21 1 1 14.00 14 12 2 0
.................................................................CCGTAGATCCGATCTTGTGA................................................................................................ 20 1 1 14.00 14 7 7 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGTAT......................................................... 25 2 1 14.00 14 14 0 0
..............................................................CACCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 14.00 14 14 0 0
..............................................................AACCCGTAGATCCGATATTGT.................................................................................................. 21 1 1 14.00 14 13 1 0
..............................................................AAGCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 14.00 14 11 2 1
...................................................................................................CAAGCTCGTTTCTATGGGTCTGTA.......................................................... 24 1 1 14.00 14 14 0 0
..............................................................AACCCGTAGAACCGATCTTGTGA................................................................................................ 23 2 1 14.00 14 14 0 0
..............................................................AACACGTAGATCCGATCTTGTG................................................................................................. 22 1 1 14.00 14 13 1 0
..............................................................AACCCGTAGATCCGATCTAGTGA................................................................................................ 23 2 1 13.00 13 13 0 0
............................................................AAAACCCGTAGATCCGATCTTGT.................................................................................................. 23 1 1 13.00 13 12 1 0
..............................................................AACCCGTAGATCCGATATTGTGT................................................................................................ 23 2 1 13.00 13 13 0 0
..............................................................AACCCGTAGATCCGATCTTGTCT................................................................................................ 23 2 1 13.00 13 13 0 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGTT.......................................................... 24 1 1 13.00 13 13 0 0
..............................................................GACCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 13.00 13 12 1 0
..............................................................AACACGTAGATCCGCTCTTGT.................................................................................................. 21 2 1 13.00 13 13 0 0
..............................................................AACCCGTAGACCCGATCTTGTGT................................................................................................ 23 2 1 12.00 12 12 0 0
..............................................................AACCCGTAGAACCGATCTTGTG................................................................................................. 22 1 1 12.00 12 11 1 0
..............................................................AACCCGCAGATCCGATCTTGTGA................................................................................................ 23 2 1 12.00 12 12 0 0
..................................................................CGTAGATCCGATCTTGTG................................................................................................. 18 0 1 11.00 11 2 9 0
..............................................................AACCCGTAGATCCCATCTTGTGT................................................................................................ 23 2 1 11.00 11 10 0 1
..............................................................AACCCGTAGATCCTATCTTGTGA................................................................................................ 23 2 1 11.00 11 10 1 0
..............................................................ACCCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 11.00 11 11 0 0
..............................................................AACCCGTAGATCCGATCTAGTG................................................................................................. 22 1 1 11.00 11 11 0 0
............................................................AAAACCCGTAGATCCGATCTTGTGA................................................................................................ 25 2 1 11.00 11 11 0 0
..............................................................AACCCGTAGATTCGATCTTGTG................................................................................................. 22 1 1 11.00 11 11 0 0
..............................................................AAACCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 10.00 10 8 2 0
..............................................................AACCCGTAGATCCGATCTTGTTT................................................................................................ 23 2 1 10.00 10 10 0 0
..............................................................AAACCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 10.00 10 6 4 0
..............................................................GACCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 10.00 10 4 6 0
..............................................................AACCCGTAGATCCGATCTTGTGTTT.............................................................................................. 25 2 1 10.00 10 10 0 0
..............................................................AACCCGTCGATCCGATCTTGT.................................................................................................. 21 1 1 10.00 10 8 1 1
..............................................................AACCCGTAGATCCGATCTTGTGAC............................................................................................... 24 2 1 10.00 10 9 1 0
..............................................................AACCCGTAGATCCGATCTTGCGA................................................................................................ 23 2 1 10.00 10 10 0 0
..............................................................AACCCGTAGATCCTATCTTGTG................................................................................................. 22 1 1 9.00 9 8 1 0
..............................................................ACCCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 9.00 9 7 2 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGAAA......................................................... 25 3 1 9.00 9 9 0 0
..............................................................AACCCATAGATCCGATCTTGTG................................................................................................. 22 1 1 9.00 9 9 0 0
..............................................................AACACGTAGATCCGCTCTTGTGA................................................................................................ 23 3 2 9.00 18 18 0 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGAT.......................................................... 24 2 1 9.00 9 9 0 0
...............................................................ACCCGTAGATCCGATCTTGTGTA............................................................................................... 23 2 1 9.00 9 9 0 0
..............................................................AACCCGTAGATCCTATCTTGT.................................................................................................. 21 1 1 9.00 9 9 0 0
..............................................................GACCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 9.00 9 9 0 0
..............................................................AAGCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 9.00 9 6 3 0
..............................................................AACCCGTAGATCCGATCTTGTAAA............................................................................................... 24 3 1 9.00 9 9 0 0
..............................................................AACCCGCAGATCCGATCTTGTG................................................................................................. 22 1 1 9.00 9 8 1 0
..............................................................AACCCGTATATCCGATCTTGTGA................................................................................................ 23 2 1 9.00 9 6 3 0
..............................................................AACCCGCAGATCCGATCTTGT.................................................................................................. 21 1 1 9.00 9 7 2 0
..............................................................AACCCGTCGATCCGATCTTGTGT................................................................................................ 23 2 1 9.00 9 9 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAG............................................................................................... 24 2 1 9.00 9 9 0 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGTAA......................................................... 24 2 1 9.00 9 9 0 0
..............................................................AACCCGAAGATCCGATCTTGTGA................................................................................................ 23 2 1 8.00 8 8 0 0
..............................................................AACCCGTAAATCCGATCTTGTGA................................................................................................ 23 2 1 8.00 8 8 0 0
..............................................................AACCCGTAGATCCAATCTTGTGT................................................................................................ 23 2 1 8.00 8 7 0 1
.............................................................AAACCCGTAGATCCGATCTTGTT................................................................................................. 23 1 1 8.00 8 8 0 0
..............................................................AACCCGTAGATACGCTCTTGTGA................................................................................................ 23 3 1 8.00 8 8 0 0
................................................................CCCGTAGATCCGATCTTGT.................................................................................................. 19 0 1 8.00 8 8 0 0
..............................................................AAGCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 8.00 8 5 3 0
..............................................................AACCCGTAGAACCGATCTTGT.................................................................................................. 21 1 1 8.00 8 7 1 0
..............................................................AACCCGTAGATCTGATCTTGTG................................................................................................. 22 1 1 8.00 8 8 0 0
..............................................................AACCAGTAGATCCGATCTTGTG................................................................................................. 22 1 1 8.00 8 8 0 0
..............................................................CACCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 8.00 8 7 0 1
..............................................................AACACGTAGATCCGCTCTTGTGT................................................................................................ 23 3 1 7.00 7 6 0 1
............................................................AAAACCCGTAGATCCGATCTTGTGT................................................................................................ 25 2 1 7.00 7 7 0 0
..............................................................ATCCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 7.00 7 0 7 0
..............................................................AACCCGTAGATCCGATCTTGGG................................................................................................. 22 1 1 7.00 7 7 0 0
..............................................................AACCCGTAGATCCGATGTTGTGA................................................................................................ 23 2 1 7.00 7 7 0 0
.............................................................AAACCCGTAGATCCGATCTTGTGAA............................................................................................... 25 2 1 7.00 7 7 0 0
..............................................................AAGCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 7.00 7 7 0 0
..............................................................AACCCGTAGATGCGATCTTGTG................................................................................................. 22 1 1 7.00 7 7 0 0
..............................................................TACCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 7.00 7 6 1 0
..............................................................AACCCGTAGATCCGTTCTTGTGA................................................................................................ 23 2 1 7.00 7 5 1 1
...................................................................................................CAAGCTCGTTTCTATGGGTCT............................................................. 21 0 1 7.00 7 7 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTCG.............................................................................................. 25 2 1 7.00 7 1 0 6
..............................................................AACCCGTAGCTCCGATCTTGTGT................................................................................................ 23 2 1 7.00 7 6 1 0
..............................................................AATCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 6.00 6 5 1 0
..............................................................AACTCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 6.00 6 6 0 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGTAT......................................................... 24 2 1 6.00 6 6 0 0
..............................................................AACCCGTAGATGCGATCTTGTGT................................................................................................ 23 2 1 6.00 6 6 0 0
.................................................................CCGTAGATCCGATCTTGTGT................................................................................................ 20 1 1 6.00 6 6 0 0
..............................................................AATCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 6.00 6 3 3 0
..............................................................AACCCGTAGCTCCGATCTTGT.................................................................................................. 21 1 1 6.00 6 6 0 0
..............................................................AACCCGTAGATCCGATCCTGTGA................................................................................................ 23 2 1 6.00 6 6 0 0
..............................................................AATCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 6.00 6 4 2 0
..............................................................AACCAGTAGATCCGATCTTGT.................................................................................................. 21 1 1 6.00 6 5 1 0
..............................................................AACACGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 6.00 6 4 1 1
..............................................................AACACGTAGATCCGATCTTGT.................................................................................................. 21 1 1 6.00 6 6 0 0
..............................................................AACCCGTAGATCCGATCTTGTCAA............................................................................................... 24 3 1 6.00 6 6 0 0
.............................................................AAACCCGTAGATCCGATCTTGTAT................................................................................................ 24 2 1 6.00 6 6 0 0
..............................................................AACCCGTAGATCCGATCTTGAG................................................................................................. 22 1 1 6.00 6 6 0 0
..............................................................AACCCATAGATCCGATCTTGTGT................................................................................................ 23 2 1 6.00 6 5 1 0
..............................................................AACACGTAGATCCGCTCTTGTG................................................................................................. 22 2 1 6.00 6 6 0 0
..............................................................AACCTGTAGATCCGATCTTGTG................................................................................................. 22 1 1 6.00 6 5 0 1
..............................................................AACCCGTAGATCCGATCTTGTGAGT.............................................................................................. 25 3 1 6.00 6 6 0 0
..............................................................AACCCGTAGATCCGGTCTTGTG................................................................................................. 22 1 1 6.00 6 5 1 0
..............................................................TACCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 6.00 6 6 0 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGA........................................................... 22 1 1 6.00 6 6 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAAT.............................................................................................. 25 3 1 6.00 6 6 0 0
..............................................................AACCCGTAGATCCGA........................................................................................................ 15 0 2 5.50 11 4 7 0
..............................................................AACCCGTAGATCCGATCTTTT.................................................................................................. 21 1 1 5.00 5 2 3 0
..........................................................TCTAAACCCGTAGATCCGATCTTGTGT................................................................................................ 27 3 1 5.00 5 0 0 5
..............................................................AACCCGTAGATCAGATCTTGTGT................................................................................................ 23 2 1 5.00 5 5 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTG............................................................................................... 24 2 1 5.00 5 5 0 0
.............................................................AAACCCGTAGATCAGATCTTGT.................................................................................................. 22 1 1 5.00 5 5 0 0
..................................................................CGTAGATCCGATCTTGTGT................................................................................................ 19 1 1 5.00 5 4 1 0
..............................................................AACCCGTAGATCCGATCTTGCGT................................................................................................ 23 2 1 5.00 5 4 0 1
............................................................AAAACCCGTAGATCCGATCTTGTG................................................................................................. 24 1 1 5.00 5 5 0 0
..........................................................AAAAAACCCGTAGATCCGATCTTGTG................................................................................................. 26 2 1 5.00 5 5 0 0
..............................................................ACCCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 5.00 5 5 0 0
..............................................................AACCCGTAGATTCGATCTTGT.................................................................................................. 21 1 1 5.00 5 5 0 0
............................................................ACAACCCGTAGATCCGATCTTGTG................................................................................................. 24 2 1 5.00 5 4 1 0
..............................................................AACCCGTAAATCCGATCTTGT.................................................................................................. 21 1 1 5.00 5 5 0 0
..............................................................AACCCGTAGATCCGGTCTTGTGA................................................................................................ 23 2 1 5.00 5 4 1 0
..............................................................AACCCGTAGATCCGATCTTGAA................................................................................................. 22 2 1 5.00 5 4 1 0
..............................................................AACCCGTAGATCCGATCTTGTAAT............................................................................................... 24 2 1 5.00 5 5 0 0
..............................................................AATCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 5.00 5 4 1 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGTA.......................................................... 23 1 1 5.00 5 5 0 0
..............................................................AACCCGTAGATCCGATCTTGCG................................................................................................. 22 1 1 5.00 5 5 0 0
..............................................................AACCCGTAGATCCGATTTTGTG................................................................................................. 22 1 1 5.00 5 4 0 1
..............................................................AACCCGTAGATCCGTTCTTGTG................................................................................................. 22 1 1 5.00 5 3 1 1
..............................................................AACCCGTAGATCCGATTTTGTGT................................................................................................ 23 2 1 5.00 5 5 0 0
..............................................................AACCTGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 5.00 5 4 1 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTGTTT......................................................... 25 2 1 5.00 5 5 0 0
..............................................................AGCCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 5.00 5 0 5 0
..............................................................AACCCGTAGATGCGATCTTGTGA................................................................................................ 23 2 1 5.00 5 5 0 0
...................................................................GTAGATCCGATCTTGTGA................................................................................................ 18 1 1 5.00 5 2 3 0
................................................................CCCGTAGATCCGATCTTGTGAA............................................................................................... 22 2 1 5.00 5 5 0 0
..............................................................AACCCGTAGGTCCGATCTTGTG................................................................................................. 22 1 1 5.00 5 5 0 0
..............................................................AACCCGTAGATCCGATTTTGT.................................................................................................. 21 1 1 5.00 5 5 0 0
...................................................................GTAGATCCGATCTTGT.................................................................................................. 16 0 2 4.50 9 0 9 0
..............................................................AACCCGTAGATCCGACCTTGTG................................................................................................. 22 1 2 4.50 9 9 0 0
.............................................................AAACCCGTCGATCCGATCTTGT.................................................................................................. 22 1 1 4.00 4 3 1 0
..............................................................AACCCGTAGATCCGATCTCGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGAA.......................................................... 23 2 1 4.00 4 4 0 0
..............................................................AACCCCTAGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 3 1 0
..............................................................AACCCGTAGATCCGATCTTATGA................................................................................................ 23 2 1 4.00 4 3 1 0
..............................................................AACCCGTAGATCCGATCTTGTGGA............................................................................................... 24 1 1 4.00 4 2 2 0
..............................................................AACCCGTAGATCCGTTCTTGT.................................................................................................. 21 1 1 4.00 4 4 0 0
..............................................................AACCCGTAGATACGATCTTGTGAA............................................................................................... 24 3 1 4.00 4 4 0 0
..............................................................AACCCGTAGCTCCGATCTTGTG................................................................................................. 22 1 1 4.00 4 3 1 0
..............................................................AACCCTTAGATCCGATCTTGTG................................................................................................. 22 1 1 4.00 4 4 0 0
..............................................................AACCAGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCCGATCTCGTGT................................................................................................ 23 2 1 4.00 4 3 1 0
..............................................................AACCCGTAGATCCGATCTTGTGGT............................................................................................... 24 0 1 4.00 4 2 2 0
..............................................................AACCCTTAGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
..............................................................AACCCCTAGATCCGATCTTGT.................................................................................................. 21 1 1 4.00 4 3 1 0
.................................................................CCGTAGATCCGATCTTG................................................................................................... 17 0 1 4.00 4 0 4 0
..............................................................AACCCGTAGATGCGATCTTGT.................................................................................................. 21 1 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCTGATCTTGTGA................................................................................................ 23 2 1 4.00 4 3 1 0
..............................................................AACCCGTAAATCCGATCTTGTG................................................................................................. 22 1 1 4.00 4 4 0 0
.............................................................AAACCCGTATATCCGATCTTGTG................................................................................................. 23 1 1 4.00 4 4 0 0
...........................................................GTGAACCCGTAGATCCGATCTT.................................................................................................... 22 2 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTC............................................................................................... 24 2 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCCGATATTGTCA................................................................................................ 23 3 1 4.00 4 4 0 0
..............................................................AACCCGTTGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCCGGTCTTGT.................................................................................................. 21 1 1 4.00 4 2 2 0
..............................................................AACCCCTAGATCCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 3 1 0
..............................................................AACCCGAAGATCCGATCTTGTG................................................................................................. 22 1 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTGGGA............................................................................................ 27 3 1 4.00 4 3 1 0
..............................................................AACCCGTTGATCCGATCTTGTG................................................................................................. 22 1 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCAGATCTTGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
..............................................................AACCCGTAGGTCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAGA.............................................................................................. 25 3 1 4.00 4 4 0 0
..............................................................AACCCGTGGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 4 0 0
..............................................................ATCCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 2 2 0
...................................................................................................CAAGCTCGTTTCTATGG................................................................. 17 0 1 4.00 4 3 1 0
..............................................................AGCCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 1 3 0
.................................................................CCGTAGATCCGATCTTGTGAAC.............................................................................................. 22 3 3 3.67 11 11 0 0
................................................................CCCGTAGATCCGATCTTGTGAAA.............................................................................................. 23 3 2 3.50 7 7 0 0
..............................................................AACCCGTAGATCCGAACTTGTGG................................................................................................ 23 1 2 3.50 7 7 0 0
..............................................................AACCAGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACGCGTAGATCCGCTCTTGT.................................................................................................. 21 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTAGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACTCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCTATCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTTTTGA................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGGTCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTTTTG................................................................................................. 22 1 1 3.00 3 1 2 0
..............................................................AACTCGTAGATCCGCTCTTGTG................................................................................................. 22 2 1 3.00 3 2 0 1
.............................................................AAACCCGTAGATCCGATCTT.................................................................................................... 20 0 1 3.00 3 0 3 0
.............................................................AAACCCGTAGATCCGATCTTGA.................................................................................................. 22 1 1 3.00 3 2 1 0
..............................................................AACCCGTGGATCCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AGCCCGTAGATCCGATCTTG................................................................................................... 20 1 1 3.00 3 0 3 0
..............................................................AACCCGTAGATCCGATCTTGAGA................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGCTCCGATCTTGTGA................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATACGCTCTTGTG................................................................................................. 22 2 1 3.00 3 3 0 0
...............................................................ACCCGTAGATCCGATCTTGTGAAA.............................................................................................. 24 3 1 3.00 3 3 0 0
.............................................................GAACCCGTAGATCCGATCTTGT.................................................................................................. 22 1 1 3.00 3 3 0 0
..............................................................AACGCGTAGATCCGCTCTTGTGT................................................................................................ 23 3 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCAATCTAGT.................................................................................................. 21 2 1 3.00 3 2 0 1
...............................................................ACCCGTAGATCCGATCTT.................................................................................................... 18 0 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGACCTTGTGT................................................................................................ 23 2 2 3.00 6 5 1 0
...................................................................................................CAAGCTCGTTTCTATGGGTCTAAT.......................................................... 24 3 1 3.00 3 3 0 0
..............................................................AACCCGTATATCCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGACCTTGTGA................................................................................................ 23 2 2 3.00 6 6 0 0
..............................................................AACCCGAAGATCCGATCTTGT.................................................................................................. 21 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCTGATCTTGT.................................................................................................. 21 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCGGATCTTGTGA................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGAGCCGATCTTGT.................................................................................................. 21 1 1 3.00 3 0 3 0
..............................................................AACCCATAGATCCGATCTTGTGA................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AAATCGTAGATCCGATCTTGT.................................................................................................. 21 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTTTG.................................................................................................. 21 2 1 3.00 3 0 3 0
..............................................................AACCCGTAGAACCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 2 1 0
..............................................................AACCCGTAGATACGATCTTGTGG................................................................................................ 23 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTAGT.................................................................................................. 21 1 1 3.00 3 2 0 1
..............................................................AACCCGTAGACCCGATCTTGTA................................................................................................. 22 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCTGATCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGCAGATCCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTTGTCG................................................................................................ 23 1 1 3.00 3 0 0 3
..............................................................AACCCCTAGATCCGATCTTGTG................................................................................................. 22 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGCTCTTGTGTT............................................................................................... 24 2 1 3.00 3 3 0 0
.............................................................AAGCCCGTAGATCCGATCTTGT.................................................................................................. 22 1 1 3.00 3 2 1 0
..............................................................AACCCGTAGATCCGATATTGGG................................................................................................. 22 2 1 3.00 3 3 0 0
...........................................................AAAAACCCGTAGATCCGATCTTGT.................................................................................................. 24 1 1 3.00 3 3 0 0
..............................................................ACCCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 1 2 0
..............................................................AACCCGTAGATCCGATCTTGTTG................................................................................................ 23 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGAGCCGATCTTGTGA................................................................................................ 23 2 1 3.00 3 1 2 0
....................................................................................................AAGCTCGTTTCTATGGGTCTGAT.......................................................... 23 2 1 3.00 3 3 0 0
..............................................................AACCCATAGATCCGATCTTGT.................................................................................................. 21 1 1 3.00 3 2 1 0
.................................................................CCGTAGATCCGATCTTGTA................................................................................................. 19 1 1 3.00 3 3 0 0
..............................................................AACCCGTAGATCCGATCTTGAGT................................................................................................ 23 2 1 3.00 3 3 0 0

Anti-sense strand reads

TCTACAAATCTTGTTTACGATGTAATCATTTTTCAGGTACACCCTACTACGGGTAACCGTATTTGGGCATCTAGGCTAGAACACCACTTCACCTGGCGTGTTCGAGCAAAGATACCCAGACACCGTCACACCATTAGACTGTCTCGTGATACTACATTCACGATGAGTTAGTGTAGAGTCA
********************************************.(((((((((.((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).)))).))))).))))...***********************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:33 PM