ID:

rno-mir-879

 Coordinate:

chr4:21673635-21673710 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.3

Sense Strand Reads

CTGGGTGCTGTTGATGGCCGTCCTGAGTTCCAGAGACTCACAAGACAAGTTTCTAGATCCAGAGGCTTATAGCTCTAAGCCTTGGATAAAAGAGGCTTATGGCTTCAAGCTTTCGGAGCTGGCGACTCACTGATCTTCGTGGTCAAGCTTCAGAGTACCAATTCCTGCTGGCTAAG
*********************************************..((((.((((.(((.(((((((..((((.((((((((........)))))))).))))..))))))).))).)))).))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528819
10dpp_testes
............................................................AGAGGCTTATAGCTCTAAGCCT.............................................................................................. 22 0 1 8.00 8 7 1
..............................................................................................GCTTATGGCTTCAAGCTTTCGG............................................................ 22 0 1 5.00 5 3 2
...............................................................................................CTTATGGCTTCAAGCTTTCGGT........................................................... 22 1 1 5.00 5 2 3
...............................................................................................CTTATGGCTTCAAGCTTTCGGTT.......................................................... 23 2 1 3.00 3 0 3
............................................................AGAGGCTTATAGCTCTAAGC................................................................................................ 20 0 1 2.00 2 2 0
............................................................AGAGGCTTATAGCTCTAAG................................................................................................. 19 0 1 2.00 2 2 0
............................................................AGAGGCTTATAGCTCTAAGCC............................................................................................... 21 0 1 1.00 1 1 0
............................................................AGAGGCTTATAGCTCTAAGA................................................................................................ 20 1 1 1.00 1 1 0
............................................................AGAGGCTTATAGCTCTAAGCCTAAT........................................................................................... 25 3 1 1.00 1 0 1
..............................................................................................GCTTATGGCTTCAAGCTTTCGT............................................................ 22 1 1 1.00 1 1 0
..............................................................................................GCTTATGGCTTCAAGCTTTCGGT........................................................... 23 1 1 1.00 1 1 0
........................................CAAGACAAGTTTCTAGATCC.................................................................................................................... 20 0 1 1.00 1 1 0
..............................................................................................GCTTATGGCTTCAAGCTTTCGGA........................................................... 23 0 1 1.00 1 0 1
............................................................AGAGGCTTATAGCTCTAAGCCTAT............................................................................................ 24 2 2 0.50 1 0 1
............................................................AGTGGCTTATAGCTCTAAGCCT.............................................................................................. 22 1 2 0.50 1 1 0
...............................................................................................CTTATGGCTTCAAGCTTTCGGTTT......................................................... 24 3 2 0.50 1 0 1
............................................................AGAGGCTTATAGCTCTAAGCCAAT............................................................................................ 24 3 5 0.20 1 0 1

Anti-sense strand reads

GACCCACGACAACTACCGGCAGGACTCAAGGTCTCTGAGTGTTCTGTTCAAAGATCTAGGTCTCCGAATATCGAGATTCGGAACCTATTTTCTCCGAATACCGAAGTTCGAAAGCCTCGACCGCTGAGTGACTAGAAGCACCAGTTCGAAGTCTCATGGTTAAGGACGACCGATTC
*********************************************..((((.((((.(((.(((((((..((((.((((((((........)))))))).))))..))))))).))).)))).))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:43 PM