ID:

rno-mir-877

 Coordinate:

chr20:3318872-3318956 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.4 -35.9

Sense Strand Reads

AGGGACAGCTGGAGCAGGGGGATGATACTGCCGCTGAGAAACTAGAAAAGGTAGAGGAGATGGCGCAGGGGACACAAGGTAGGCCTTGCGGGTCTGTGGGCCCTTGGACATGTGTCCTCTTCTCCCTCCTCCCAGGTATATGAGGAACTGCGAGCTACTGGGGCAGCAGCTGCAGAGGCCAAGGC
***********************************...............((.((((((..((...((((((((((..((...((....(((((....)))))..)))).)))))))))).))..))))))...............))************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
..................................................GTAGAGGAGATGGCGCAGGGGACA............................................................................................................... 24 0 1 53.00 53 53 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAAA............................................................................................................... 24 1 1 28.00 28 28 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAC................................................................................................................ 23 0 1 23.00 23 22 1 0
..................................................GTAGAGGAGATGGCGCAGGGGAA................................................................................................................ 23 1 1 23.00 23 23 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAAT............................................................................................................... 24 2 1 18.00 18 18 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAT................................................................................................................ 23 1 1 17.00 17 17 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACT............................................................................................................... 24 1 1 16.00 16 16 0 0
..................................................GTAGAGGAGATGGCGCAGGGGA................................................................................................................. 22 0 1 11.00 11 10 0 1
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAT.................................................. 23 1 1 9.00 9 9 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAAT............................................................................................................. 26 2 1 8.00 8 8 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAA.............................................................................................................. 25 1 1 7.00 7 7 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAT.............................................................................................................. 25 1 1 5.00 5 5 0 0
...................................................TAGAGGAGATGGCGCAGGGGACA............................................................................................................... 23 0 1 5.00 5 5 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAGA................................................ 25 2 1 5.00 5 5 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAAAA.............................................................................................................. 25 2 1 5.00 5 5 0 0
..................................................GTAGAGGAGATGGCGCAGGGAAA................................................................................................................ 23 2 1 4.00 4 4 0 0
..................................................GTAGAGGAGATGGCGCAGGGAAT................................................................................................................ 23 2 1 4.00 4 4 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAAAT.............................................................................................................. 25 2 1 4.00 4 4 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATAT................................................ 25 2 1 4.00 4 4 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATT................................................. 24 2 5 3.40 17 17 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAAT................................................ 25 2 1 3.00 3 3 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACTGA............................................................................................................. 26 2 1 3.00 3 3 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAA.................................................. 23 1 1 3.00 3 3 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACATT............................................................................................................. 26 2 1 3.00 3 3 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACACA............................................................................................................. 26 0 1 3.00 3 3 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAGT................................................. 24 1 1 3.00 3 3 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAAA................................................ 25 3 7 2.57 18 17 1 0
..........................................................................................GGTCTGTGGGCCCTTGGACCG.......................................................................... 21 2 3 2.00 6 0 6 0
....................................................AGAGGAGATGGCGCAGGGGACACT............................................................................................................. 24 1 1 2.00 2 2 0 0
..................................................GTCGAGGAGATGGCGCAGGGGA................................................................................................................. 22 1 1 2.00 2 2 0 0
..................................................GTAGAGGAGATGGCGCAGGGGTAA............................................................................................................... 24 2 1 2.00 2 2 0 0
..................................................TTAGAGGAGATGGCGCAGGGGAC................................................................................................................ 23 1 1 2.00 2 2 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAT................................................. 24 2 4 2.00 8 8 0 0
..................................................GTAGAGGAGATGGCGCAGGGGATT............................................................................................................... 24 2 1 2.00 2 2 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAAAT............................................................................................................ 27 2 1 2.00 2 2 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACTTT............................................................................................................. 26 3 2 2.00 4 4 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAGT................................................ 25 1 1 2.00 2 2 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAAG............................................................................................................... 24 2 1 2.00 2 2 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAGA................................................. 24 1 1 2.00 2 2 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAATT................................................ 25 2 2 1.50 3 3 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAA................................................. 24 2 3 1.33 4 4 0 0
...................................................TAGAGGAGATGGCGCAGGGGACACT............................................................................................................. 25 1 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGACAAGA............................................................................................................ 26 2 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACATAAT........................................................................................................... 28 2 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGAAACA............................................................................................................. 25 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAGA............................................................................................................. 26 1 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGAAT............................................................................................................... 23 2 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCGTCCCAGA................................................. 24 2 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGA................................................................................................................. 21 0 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATTAA............................................... 26 3 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGAGCAGGGGACA............................................................................................................... 24 1 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGACACTTT........................................................................................................... 27 3 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAGAA................................................ 25 2 1 1.00 1 1 0 0
..................................................GTACAGGAGATGGCGCAGGGGAC................................................................................................................ 23 1 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCC.................................................... 21 0 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGTGCAGGGGAC................................................................................................................ 23 1 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGACACAT............................................................................................................ 26 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGA.................................................................................................................. 21 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGAA................................................................................................................. 22 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAAGGGAT................................................................................................................ 23 2 2 1.00 2 2 0 0
..................................................GTAGAGGAGATCGCGCAGGGGAC................................................................................................................ 23 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAAA............................................................................................................. 26 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACTAA............................................................................................................. 26 2 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACTA.............................................................................................................. 25 2 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATGA................................................ 25 2 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACATAA............................................................................................................ 27 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGTC................................................................................................................. 22 2 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCT................................................... 22 1 2 1.00 2 2 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACACAA............................................................................................................ 27 0 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACAC.............................................................................................................. 25 0 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGTGCAGGGGACA............................................................................................................... 24 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGATATAA............................................................................................................ 27 2 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGACAAA............................................................................................................. 25 1 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGACAC.............................................................................................................. 24 0 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGG.................................................................................................................. 21 0 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGAAA............................................................................................................... 23 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACTT.............................................................................................................. 25 2 2 1.00 2 2 0 0
..................................................GTAGAGGCGATGGCGCAGGGGAC................................................................................................................ 23 1 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGGAA............................................................................................................... 24 2 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAATAT.............................................. 27 2 1 1.00 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACACC............................................................................................................. 26 1 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATAA................................................ 25 3 4 1.00 4 4 0 0
..................................................GTAGAGGAGATGGCGCAGGGGACATTT............................................................................................................ 27 3 1 1.00 1 1 0 0
...............................................................................................................ATGTCCTCTTCTCCCTCCTCCCAGT................................................. 25 2 1 1.00 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGAAAAA............................................................................................................. 25 2 1 1.00 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATA................................................. 24 2 3 1.00 3 3 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAGTT.............................................................................................................. 25 3 2 0.50 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGAAAAT.............................................................................................................. 25 3 2 0.50 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGATTT.............................................................................................................. 25 3 2 0.50 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGTAT............................................................................................................... 24 3 2 0.50 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGAATT.............................................................................................................. 25 3 2 0.50 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGGCT................................................................................................................ 23 2 2 0.50 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAAG................................................ 25 3 4 0.50 2 2 0 0
...................................................TAGAGGAGATGGCGCAGGGGAAAAGA............................................................................................................ 26 3 2 0.50 1 1 0 0
..................................................GTAGAGGAGATGGAGCAGGGGAA................................................................................................................ 23 2 2 0.50 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCAAAAA............................................... 26 3 2 0.50 1 1 0 0
..................................................................................................................TCCTCTTCTCCCTCCTCCCAGT................................................. 22 1 3 0.33 1 1 0 0
..................................................GTAGAGGAGATGGCGCCGGGGCA................................................................................................................ 23 3 3 0.33 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATTA................................................ 25 3 14 0.21 3 3 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCATTTT............................................... 26 3 5 0.20 1 1 0 0
...................................................TAGAGGAGATGGCGCAGGGGATTA.............................................................................................................. 24 3 5 0.20 1 1 0 0
.................................................................................................................GTCCTCTTCTCCCTCCTCCCAAT................................................. 23 2 6 0.17 1 1 0 0
..................................................GTAGAGGAGATGGCGCAGGGTTT................................................................................................................ 23 3 9 0.11 1 1 0 0
................................................................................................................TGTCCTCTTCTCCCTCCTCCCTAA................................................. 24 3 20 0.05 1 1 0 0
..................................................................................................................TCCTCTTCTCCCTCCTCCCATAT................................................ 23 2 20 0.05 1 1 0 0

Anti-sense strand reads

TCCCTGTCGACCTCGTCCCCCTACTATGACGGCGACTCTTTGATCTTTTCCATCTCCTCTACCGCGTCCCCTGTGTTCCATCCGGAACGCCCAGACACCCGGGAACCTGTACACAGGAGAAGAGGGAGGAGGGTCCATATACTCCTTGACGCTCGATGACCCCGTCGTCGACGTCTCCGGTTCCG
*************************************...............((.((((((..((...((((((((((..((...((....(((((....)))))..)))).)))))))))).))..))))))...............))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:42 PM