ID:

rno-mir-873

 Coordinate:

chr5:52481076-52481152 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.5 -37.1 -37.0 -36.5

Sense Strand Reads

AAATGCCAGCATCTTCTTATGAACAACGAACACCTGCTTAAAATCAGTTTGTGTGCATTTGCAGGAACTTGTGAGTCTCCTATTGAAAATGGACAGGAGACTGACAAGTTCCCGGGAACACCCACAAATCTTCCTACTCATTTCTACCACCTTGCCATGGACAGCACTCTGTGACTG
********************************************.((((((((....(((...(((((((((.((((((((.((.......)).)))))))).)))))))))...)))....))))))..))********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
...........................................................TGCAGGAACTTGTGAGTCTCCTAT.............................................................................................. 24 0 1 10.00 10 10
............................................................GCAGGAACTTGTGAGTCTCCTTT.............................................................................................. 23 1 1 6.00 6 6
...........................................................TGCAGGAACTTGTGAGTCTCCTTT.............................................................................................. 24 1 1 6.00 6 6
...........................................................TGCAGGAACTTGTGAGTCTCCTTTT............................................................................................. 25 1 1 5.00 5 5
..........................................................ATGCAGGAACTTGTGAGTCTCCTTTT............................................................................................. 26 2 1 5.00 5 5
............................................................GCAGGAACTTGTGAGTCTCCTAT.............................................................................................. 23 0 1 5.00 5 5
................................................................................................GAGACTGACAAGTTCCCGGGAGTA......................................................... 24 2 1 3.00 3 3
...........................................................TGCAGGAACTTGTGAGTCTCCTA............................................................................................... 23 0 1 3.00 3 3
............................................................GCAGGAACTTGTGCGTCTCCTAA.............................................................................................. 23 2 1 2.00 2 2
...........................................................TGCAGGAACTTGTGAGTCTC.................................................................................................. 20 0 1 2.00 2 2
............................................................GCAGGAACTTGTGAGTCTCCTA............................................................................................... 22 0 1 2.00 2 2
............................................................GCAGGAACTTGTGAGTCTCCTAAT............................................................................................. 24 1 1 2.00 2 2
............................................................GCAGGAACTTGTGAGTCTCCTCT.............................................................................................. 23 1 1 2.00 2 2
............................................................GCAGGAACTTGTGAGTCTCCTAA.............................................................................................. 23 1 1 2.00 2 2
...........................................................TGCAGGAACTTGTGAGTCTCC................................................................................................. 21 0 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCTTA.............................................................................................. 23 2 2 1.00 2 2
................................................................................................GAGACTGACAAGTTCCCGGGATCT......................................................... 24 2 1 1.00 1 1
................................................................................................GAGACTGACAAGTTCCCGGGA............................................................ 21 0 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCTAAA............................................................................................. 24 2 1 1.00 1 1
...........................................................TGCAGGAACTTGTGTGTCTCCTTT.............................................................................................. 24 2 1 1.00 1 1
................................................................................................GAGACTGACAAGTTCCCGGGATT.......................................................... 23 2 2 1.00 2 2
............................................................GCAGGAACTTGTGAGTCTCCTAG.............................................................................................. 23 1 1 1.00 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCTAA.............................................................................................. 24 1 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCTATTT............................................................................................ 25 1 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCTATT............................................................................................. 24 0 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCTATAA............................................................................................ 25 2 1 1.00 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCAAT.............................................................................................. 24 1 1 1.00 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCTTAT............................................................................................. 25 2 1 1.00 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCTT............................................................................................... 23 1 1 1.00 1 1
................................................................................................GAGACTGACAAGTTCCCGGGAA........................................................... 22 0 1 1.00 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCTTA.............................................................................................. 24 2 1 1.00 1 1
...........................................................AGCAGGAACTTGTGAGTCTCCTAT.............................................................................................. 24 1 1 1.00 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCTAAAA............................................................................................ 26 3 1 1.00 1 1
...........................................................AGCAGGAACTTGTTAGTCTCCTAT.............................................................................................. 24 2 1 1.00 1 1
................................................................................................GAGACTGACAAGTTCCCGGGAAA.......................................................... 23 1 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCT................................................................................................ 21 0 1 1.00 1 1
...........................................................TGCCGGAACTTGTGAGTCTCCTA............................................................................................... 23 1 1 1.00 1 1
............................................................GCAGGAACTTGTGAGTCTCCTTAT............................................................................................. 24 2 2 0.50 1 1
...........................................................TGCAGGAACTTGTGAGTCTCCAT............................................................................................... 23 2 2 0.50 1 1
.............................................................CAGGAACTTGTGAGTCTCCTTTA............................................................................................. 23 2 2 0.50 1 1

Anti-sense strand reads

TTTACGGTCGTAGAAGAATACTTGTTGCTTGTGGACGAATTTTAGTCAAACACACGTAAACGTCCTTGAACACTCAGAGGATAACTTTTACCTGTCCTCTGACTGTTCAAGGGCCCTTGTGGGTGTTTAGAAGGATGAGTAAAGATGGTGGAACGGTACCTGTCGTGAGACACTGAC
*********************************************.((((((((....(((...(((((((((.((((((((.((.......)).)))))))).)))))))))...)))....))))))..))******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:45 PM