ID:

rno-mir-673

 Coordinate:

chr6:133691381-133691463 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.3 -43.3 -43.3

Sense Strand Reads

TCCTTCTGGAAATGAAGCCATGCAAGAACTGTGGGAGGTCTGGCTTTGGAGCCTGAGGGGCTCACAGCTCCGGTCCTTGGAGCTCCAGAGAAAATGTTGCTCCGGGACTGAGTTCTGTGCACCCCCCTTGCCCTCCACATTCCCCGGGGCTATGCCAGGGCCCTAGCTGAGGAGTCATCATGA
*********************************************.(((((..(((((((..((((((((.((((((.(((((..((.......))..))))))))))))))..)))))....)))))))..))))).********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
....................................................................................................TCCGGGACTGAGTTCTGTGCACCAT.......................................................... 25 2 1 5.00 5 5
....................................................................................................TCCGGGACTGAGTTCTGTGCACC............................................................ 23 0 1 4.00 4 4
............................................................CTCACAGCTCCGGTCCTTGGAAA.................................................................................................... 23 2 1 2.00 2 2
...........................................................ACTCACAGCTCCGGTCCTTGGATA.................................................................................................... 24 3 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGTAA.................................................................................................... 23 3 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAA..................................................................................................... 22 1 1 1.00 1 1
...........................................................ACTCACAGCTCCGGTCCTTGGAGC.................................................................................................... 24 1 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAAAT................................................................................................... 24 2 1 1.00 1 1
....................................................................................................TCCGGGACTGAGTTCTGTGCAA............................................................. 22 1 1 1.00 1 1
....................................................................................................TCCGGGACTGAGTTCTGTGCAC............................................................. 22 0 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGA...................................................................................................... 21 0 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAGCTTTT................................................................................................ 27 3 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGT...................................................................................................... 21 1 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAAT.................................................................................................... 23 2 1 1.00 1 1
............................................................CTCACAGATCCGGTCCTTGGAGC.................................................................................................... 23 1 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAGCATCAT............................................................................................... 28 3 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGATT.................................................................................................... 23 2 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAGC.................................................................................................... 23 0 1 1.00 1 1
............................................................CTCACAGCTCCGGTCCTTGGAAAA................................................................................................... 24 3 3 0.33 1 1

Anti-sense strand reads

AGGAAGACCTTTACTTCGGTACGTTCTTGACACCCTCCAGACCGAAACCTCGGACTCCCCGAGTGTCGAGGCCAGGAACCTCGAGGTCTCTTTTACAACGAGGCCCTGACTCAAGACACGTGGGGGGAACGGGAGGTGTAAGGGGCCCCGATACGGTCCCGGGATCGACTCCTCAGTAGTACT
*********************************************.(((((..(((((((..((((((((.((((((.(((((..((.......))..))))))))))))))..)))))....)))))))..))))).********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:46 PM