ID:

rno-mir-668

 Coordinate:

chr6:133885141-133885208 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.2 -35.0 -35.0

Sense Strand Reads

TGGTCTAGGAAGACTAAGCAGGTTCAAGGCCATATACACATCCCCCTTCAGGTAAGTGTGCCTCGGGTGAGCATGCACTTAACGTAGGTGTATGTCACTCGGCTCGGCCCACTACCCAACGCGGCCCCAACTCCTTCTTCACAGGACAGTGGAAGTGGTCACCTTTCC
***********************************.......((......((((.(((.(((((((((((.((((((((((...))))))))))))))))))...))).)))))))......)).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
............................................................................................TGTCACTCGGCTCGGCCCACTACC.................................................... 24 0 1 41.00 41 41
............................................................................................TGTCACTCGGCTCGGCCCACTAC..................................................... 23 0 1 17.00 17 17
............................................................................................TGTCACTCGGCTCGGCCCACTACA.................................................... 24 1 1 10.00 10 10
............................................................................................TGTCACTCGGCTCGGCCCACTAT..................................................... 23 1 1 8.00 8 8
............................................................................................TGTCACTCGGCTCGGCCCACTACCT................................................... 25 1 1 6.00 6 6
............................................................................................TGTCACTCGGCTCGGCCCACTACCA................................................... 25 1 1 6.00 6 6
............................................................................................TGTCACTCGGCTCGGCCCACTACCCT.................................................. 26 1 1 5.00 5 5
............................................................................................TGTCACTCGGCTCGGCCCACTAAT.................................................... 24 2 1 4.00 4 4
............................................................................................TGTCACTCGGCTCGGCCCACTACT.................................................... 24 1 1 4.00 4 4
............................................................................................TGTCACTCGGCTCGGCCCACTTTT.................................................... 24 3 1 3.00 3 3
...........................................................................................ATGTCACTCGGCTCGGCCCACTACT.................................................... 25 1 1 3.00 3 3
............................................................................................TGTCACTCGGCTCGGCCCACTACCTAA................................................. 27 1 1 3.00 3 3
..........................................................................................TATGTCACTCGGCTCGGCCCACT....................................................... 23 0 1 3.00 3 3
.............................................................................................GTCACTCGGCTCGGCCCACTAAT.................................................... 23 2 1 3.00 3 3
.............................................................................................GTCACTCGGCTCGGCCCACTACCAAAA................................................ 27 2 1 3.00 3 3
............................................................................................TGTCACTCGGCTCGGCCCACTAA..................................................... 23 1 1 3.00 3 3
............................................................................................TGTCACTCGGCTCGGCCCACTACCG................................................... 25 1 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTACCCTAT................................................ 28 2 1 2.00 2 2
.............................................................................................GTCACTCGGCTCGGCCCACTACC.................................................... 23 0 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTACCAT.................................................. 26 2 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTACCCAA................................................. 27 0 1 2.00 2 2
...........................................................................................ATGTCACTCGGCTCGGCCCACTAG..................................................... 24 1 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTACCCA.................................................. 26 0 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTATTT................................................... 25 3 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTA...................................................... 22 0 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTAAA.................................................... 24 2 1 2.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTACCCTTT................................................ 28 3 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTATAA................................................... 25 3 1 1.00 1 1
...........................................................................................ATGTCACTCGGCTCGGCCCACTA...................................................... 23 0 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACCAAGT................................................ 28 3 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACCCAAT................................................ 28 1 1 1.00 1 1
..........................................................................................TATGTCACTCGGCTCGGCCCAAAA...................................................... 24 2 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCATTAT..................................................... 23 2 1 1.00 1 1
..........................................................................................TATGTCACTCGGCTCGGCCCACAAT..................................................... 25 2 1 1.00 1 1
............................................................................................TGTCACTCGGCACGGCCCACTACC.................................................... 24 1 1 1.00 1 1
..........................................................................................TATGTCACTCGGCTCGGCCCACA....................................................... 23 1 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACT....................................................... 21 0 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACAAAA................................................. 27 2 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTATA.................................................... 24 2 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACTTT.................................................. 26 3 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACCC................................................... 25 0 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACCAA.................................................. 26 1 1 1.00 1 1
...........................................................................................ATGTCACTCGGCTCGGCCCACTACCTTT................................................. 28 3 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTATT.................................................... 24 2 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCGACTACC.................................................... 24 1 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTTAT.................................................... 24 3 2 1.00 2 2
............................................................................................TGTCACTCGGCTCGGCCCACTACCAATT................................................ 28 3 1 1.00 1 1
..........................................................................................TATGTCACTCGGCTCGGCCCACTAA..................................................... 25 1 1 1.00 1 1
............................................................................................TGTCACTCGGCTCGGCCCACTACCAAAG................................................ 28 2 1 1.00 1 1
...........................................................................................ATGTCACTCGGCTCGGCCCACTACC.................................................... 25 0 1 1.00 1 1
.............................................................................................GTCACTCGGCTCGGCCCACTAC..................................................... 22 0 1 1.00 1 1

Anti-sense strand reads

ACCAGATCCTTCTGATTCGTCCAAGTTCCGGTATATGTGTAGGGGGAAGTCCATTCACACGGAGCCCACTCGTACGTGAATTGCATCCACATACAGTGAGCCGAGCCGGGTGATGGGTTGCGCCGGGGTTGAGGAAGAAGTGTCCTGTCACCTTCACCAGTGGAAAGG
***********************************.......((......((((.(((.(((((((((((.((((((((((...))))))))))))))))))...))).)))))))......)).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM